RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 SMAGPQ0VAQ4 97 aa13.72□□□□□ -0.21
CHRNA4-209ENST00000627000 IGLV4-60A0A075B6I1 120 aa13.72□□□□□ -0.21
CHRNA4-209ENST00000627000 H7C423 109 aa13.72□□□□□ -0.21
CHRNA4-209ENST00000627000 DAD1P61803 113 aa13.72□□□□□ -0.21
CHRNA4-209ENST00000627000 HERVK_113P63121 156 aa13.72□□□□□ -0.21
CHRNA4-209ENST00000627000 FAM19A3Q7Z5A8 133 aa13.72□□□□□ -0.21
CHRNA4-209ENST00000627000 TMEM238LA0A1B0GVL6 79 aa13.71□□□□□ -0.21
CHRNA4-209ENST00000627000 A6NJY4 79 aa13.71□□□□□ -0.21
CHRNA4-209ENST00000627000 NDUFA12Q9UI09 145 aa13.71□□□□□ -0.21
CHRNA4-209ENST00000627000 CMYA5Q8N3K9 4069 aa13.71□□□□□ -0.22
CHRNA4-209ENST00000627000 GAGE12HA6NDE8 117 aa13.71□□□□□ -0.22
CHRNA4-209ENST00000627000 PAX4O43316 350 aa13.71□□□□□ -0.22
CHRNA4-209ENST00000627000 SHISA2Q6UWI4 295 aa13.7□□□□□ -0.22
CHRNA4-209ENST00000627000 SPATA25Q9BR10 227 aa13.69□□□□□ -0.22
CHRNA4-209ENST00000627000 IGKV3OR2-268A0A0C4DH90 116 aa13.68□□□□□ -0.22
CHRNA4-209ENST00000627000 WFDC2Q14508 124 aa13.68□□□□□ -0.22
CHRNA4-209ENST00000627000 ZFAND6Q6FIF0 208 aa13.68□□□□□ -0.22
CHRNA4-209ENST00000627000 A0A1B0GV72 72 aa13.67□□□□□ -0.22
CHRNA4-209ENST00000627000 APOMO95445 188 aa13.67□□□□□ -0.22
CHRNA4-209ENST00000627000 LYRM7Q5U5X0 104 aa13.67□□□□□ -0.22
CHRNA4-209ENST00000627000 LITAFQ99732 161 aa13.67□□□□□ -0.22
CHRNA4-209ENST00000627000 SMIM1B2RUZ4 78 aa13.66□□□□□ -0.22
CHRNA4-209ENST00000627000 RETNQ9HD89 108 aa13.66□□□□□ -0.22
CHRNA4-209ENST00000627000 IGLV5-39A0A0G2JS06 123 aa13.66□□□□□ -0.22
CHRNA4-209ENST00000627000 H3BMG7 143 aa13.66□□□□□ -0.22
CHRNA4-209ENST00000627000 EGFEM1PQ0D2K5 195 aa13.66□□□□□ -0.22
CHRNA4-209ENST00000627000 PKD1L1Q8TDX9 2849 aa13.65□□□□□ -0.22
CHRNA4-209ENST00000627000 F5H768 121 aa13.65□□□□□ -0.22
CHRNA4-209ENST00000627000 SPART-AS1P0CW21 52 aa13.65□□□□□ -0.22
CHRNA4-209ENST00000627000 ATP5G1P05496 136 aa13.65□□□□□ -0.22
CHRNA4-209ENST00000627000 ADAMTSL4-AS1Q5T5F5 129 aa13.65□□□□□ -0.22
CHRNA4-209ENST00000627000 MUSTN1Q8IVN3 82 aa13.65□□□□□ -0.22
CHRNA4-209ENST00000627000 TRAV26-1A0A087WT03 109 aa13.64□□□□□ -0.23
CHRNA4-209ENST00000627000 HTN3P15516 51 aa13.64□□□□□ -0.23
CHRNA4-209ENST00000627000 CFC1BP0CG36 223 aa13.64□□□□□ -0.23
CHRNA4-209ENST00000627000 CFC1P0CG37 223 aa13.64□□□□□ -0.23
CHRNA4-209ENST00000627000 ETDBQ3ZM63 59 aa13.64□□□□□ -0.23
CHRNA4-209ENST00000627000 PGPEP1Q9NXJ5 209 aa13.64□□□□□ -0.23
CHRNA4-209ENST00000627000 MAST4O15021 2626 aa13.63□□□□□ -0.23
CHRNA4-209ENST00000627000 A4D1N5 150 aa13.62□□□□□ -0.23
CHRNA4-209ENST00000627000 TMEM262E9PQX1 116 aa13.62□□□□□ -0.23
CHRNA4-209ENST00000627000 PRO0461Q9UI25 63 aa13.62□□□□□ -0.23
CHRNA4-209ENST00000627000 NDUFA1O15239 70 aa13.61□□□□□ -0.23
CHRNA4-209ENST00000627000 EIF4EBP3O60516 100 aaPredicted RBP13.61□□□□□ -0.23
CHRNA4-209ENST00000627000 SH2D6Q7Z4S9 175 aa13.6□□□□□ -0.23
CHRNA4-209ENST00000627000 Q9H8V8 135 aa13.6□□□□□ -0.23
CHRNA4-209ENST00000627000 ANK2Q01484 3957 aa13.6□□□□□ -0.23
CHRNA4-209ENST00000627000 TSPAN13O95857 204 aa13.59□□□□□ -0.23
CHRNA4-209ENST00000627000 ZNF625Q96I27 306 aaPredicted RBP13.59□□□□□ -0.23
CHRNA4-209ENST00000627000 PRSS2P07478 247 aa13.59□□□□□ -0.23
CHRNA4-209ENST00000627000 NPC2P61916 151 aa13.59□□□□□ -0.23
CHRNA4-209ENST00000627000 SFTA2Q6UW10 78 aa13.58□□□□□ -0.24
CHRNA4-209ENST00000627000 DAND5Q8N907 189 aa13.58□□□□□ -0.24
CHRNA4-209ENST00000627000 SPANXDQ9BXN6 97 aa13.58□□□□□ -0.24
CHRNA4-209ENST00000627000 SPANXCQ9NY87 97 aa13.58□□□□□ -0.24
CHRNA4-209ENST00000627000 LINC00959A0A1B0GUT2 108 aa13.56□□□□□ -0.24
CHRNA4-209ENST00000627000 A0A1B0GUV1 79 aa13.56□□□□□ -0.24
CHRNA4-209ENST00000627000 MIAQ16674 131 aa13.56□□□□□ -0.24
CHRNA4-209ENST00000627000 CLPSL2Q6UWE3 100 aa13.56□□□□□ -0.24
CHRNA4-209ENST00000627000 Q8N3U1 123 aa13.56□□□□□ -0.24
CHRNA4-209ENST00000627000 IGHV3OR16-9A0A0B4J2B5 98 aa13.56□□□□□ -0.24
CHRNA4-209ENST00000627000 MTURNQ8N3F0 131 aa13.56□□□□□ -0.24
CHRNA4-209ENST00000627000 COL6A5A8TX70 2615 aa13.55□□□□□ -0.24
CHRNA4-209ENST00000627000 FOXI1Q12951 378 aa13.55□□□□□ -0.24
CHRNA4-209ENST00000627000 A0A0U1RRA0 63 aa13.54□□□□□ -0.24
CHRNA4-209ENST00000627000 TIMM17BO60830 172 aa13.54□□□□□ -0.24
CHRNA4-209ENST00000627000 PRO1854Q9UHT4 67 aa13.54□□□□□ -0.24
CHRNA4-209ENST00000627000 C5orf38Q86SI9 138 aa13.54□□□□□ -0.24
CHRNA4-209ENST00000627000 DNAH3Q8TD57 4116 aa13.53□□□□□ -0.24
CHRNA4-209ENST00000627000 TRBV20-1A0A075B6N2 111 aa13.53□□□□□ -0.24
CHRNA4-209ENST00000627000 MRPL23Q16540 153 aaKnown RBP13.53□□□□□ -0.24
CHRNA4-209ENST00000627000 TOMM7Q9P0U1 55 aa13.52□□□□□ -0.25
CHRNA4-209ENST00000627000 ICOSQ9Y6W8 199 aa13.52□□□□□ -0.25
CHRNA4-209ENST00000627000 A0A0B4J2C4 111 aa13.51□□□□□ -0.25
CHRNA4-209ENST00000627000 LOC107984156A0A0G2JMH3 177 aa13.51□□□□□ -0.25
CHRNA4-209ENST00000627000 PSMB2P49721 201 aa13.51□□□□□ -0.25
CHRNA4-209ENST00000627000 ARL17AQ8IVW1 177 aa13.51□□□□□ -0.25
CHRNA4-209ENST00000627000 COX7B2Q8TF08 81 aa13.51□□□□□ -0.25
CHRNA4-209ENST00000627000 XCL1P47992 114 aa13.51□□□□□ -0.25
CHRNA4-209ENST00000627000 CKS1BP61024 79 aa13.51□□□□□ -0.25
CHRNA4-209ENST00000627000 A0A087WZ39 114 aa13.5□□□□□ -0.25
CHRNA4-209ENST00000627000 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.5□□□□□ -0.25
CHRNA4-209ENST00000627000 IGHV3-33P01772 117 aa13.5□□□□□ -0.25
CHRNA4-209ENST00000627000 LINC00269Q8N2A0 174 aa13.5□□□□□ -0.25
CHRNA4-209ENST00000627000 PPDPFLQ8WWR9 84 aa13.5□□□□□ -0.25
CHRNA4-209ENST00000627000 H7C2G1 150 aa13.49□□□□□ -0.25
CHRNA4-209ENST00000627000 PRB2P02812 416 aaPredicted RBP13.49□□□□□ -0.25
CHRNA4-209ENST00000627000 CIRBPQ14011 172 aaKnown RBP13.49□□□□□ -0.25
CHRNA4-209ENST00000627000 SS18Q15532 418 aa13.49□□□□□ -0.25
CHRNA4-209ENST00000627000 MEIG1Q5JSS6 88 aa13.49□□□□□ -0.25
CHRNA4-209ENST00000627000 Q6ZTC4 211 aa13.48□□□□□ -0.25
CHRNA4-209ENST00000627000 TENM3Q9P273 2699 aa13.48□□□□□ -0.25
CHRNA4-209ENST00000627000 ANGP03950 147 aaKnown RBP13.47□□□□□ -0.25
CHRNA4-209ENST00000627000 HERV-K104P63124 156 aa13.47□□□□□ -0.25
CHRNA4-209ENST00000627000 LELP1Q5T871 98 aa13.47□□□□□ -0.25
CHRNA4-209ENST00000627000 TEN1Q86WV5 123 aa13.47□□□□□ -0.25
CHRNA4-209ENST00000627000 LINC00308Q8TCZ7 52 aa13.47□□□□□ -0.25
CHRNA4-209ENST00000627000 A0A0J9YWU9 116 aa13.46□□□□□ -0.25
CHRNA4-209ENST00000627000 IFITM1P13164 125 aa13.46□□□□□ -0.25
CHRNA4-209ENST00000627000 SOSTDC1Q6X4U4 206 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms