RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 Q5VSD8 79 aa5.87□□□□□ -1.47
TRIM28-214ENST00000600840 TOMM6Q96B49 74 aa5.87□□□□□ -1.47
TRIM28-214ENST00000600840 COX11Q9Y6N1 276 aa5.87□□□□□ -1.47
TRIM28-214ENST00000600840 TRBV25-1A0A075B6N4 114 aa5.86□□□□□ -1.47
TRIM28-214ENST00000600840 A0A087WX48 190 aa5.86□□□□□ -1.47
TRIM28-214ENST00000600840 HINT1P49773 126 aaPredicted RBP5.86□□□□□ -1.47
TRIM28-214ENST00000600840 TAL2Q16559 108 aa5.86□□□□□ -1.47
TRIM28-214ENST00000600840 BVES-AS1Q5T3Y7 98 aa5.86□□□□□ -1.47
TRIM28-214ENST00000600840 C20orf203Q8NBC4 194 aa5.86□□□□□ -1.47
TRIM28-214ENST00000600840 KIR2DL4Q99706 377 aa5.86□□□□□ -1.47
TRIM28-214ENST00000600840 FLG2Q5D862 2391 aaPredicted RBP5.86□□□□□ -1.47
TRIM28-214ENST00000600840 TRAV8-6A0A0B4J262 113 aa5.85□□□□□ -1.47
TRIM28-214ENST00000600840 A0A1B0GUV1 79 aa5.85□□□□□ -1.47
TRIM28-214ENST00000600840 F8VRH5 84 aa5.85□□□□□ -1.47
TRIM28-214ENST00000600840 H7C423 109 aa5.85□□□□□ -1.47
TRIM28-214ENST00000600840 NPSP0C0P6 89 aa5.85□□□□□ -1.47
TRIM28-214ENST00000600840 ERASQ7Z444 233 aa5.85□□□□□ -1.47
TRIM28-214ENST00000600840 STPG4Q8N801 248 aa5.85□□□□□ -1.47
TRIM28-214ENST00000600840 TMEM141Q96I45 108 aa5.85□□□□□ -1.47
TRIM28-214ENST00000600840 TMEM243Q9BU79 118 aa5.85□□□□□ -1.47
TRIM28-214ENST00000600840 CYSLTR1Q9Y271 337 aa5.85□□□□□ -1.47
TRIM28-214ENST00000600840 FAT1Q14517 4588 aa5.84□□□□□ -1.47
TRIM28-214ENST00000600840 IGLV4-60A0A075B6I1 120 aa5.84□□□□□ -1.47
TRIM28-214ENST00000600840 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.84□□□□□ -1.47
TRIM28-214ENST00000600840 IGKV2-29A2NJV5 120 aaPredicted RBP5.84□□□□□ -1.47
TRIM28-214ENST00000600840 IBA57-AS1B1ANH7 110 aa5.84□□□□□ -1.47
TRIM28-214ENST00000600840 K7EP13 123 aa5.84□□□□□ -1.47
TRIM28-214ENST00000600840 FGF6P10767 208 aa5.84□□□□□ -1.47
TRIM28-214ENST00000600840 RBX1P62877 108 aa5.84□□□□□ -1.47
TRIM28-214ENST00000600840 GAGE6Q13070 117 aa5.84□□□□□ -1.47
TRIM28-214ENST00000600840 MPV17L2Q567V2 206 aa5.84□□□□□ -1.47
TRIM28-214ENST00000600840 SCGB3A1Q96QR1 104 aa5.84□□□□□ -1.47
TRIM28-214ENST00000600840 TIMM17AQ99595 171 aa5.84□□□□□ -1.47
TRIM28-214ENST00000600840 PRR34Q9NV39 138 aa5.84□□□□□ -1.47
TRIM28-214ENST00000600840 UBE2D4Q9Y2X8 147 aa5.84□□□□□ -1.47
TRIM28-214ENST00000600840 CSDC2Q9Y534 153 aaKnown RBP5.84□□□□□ -1.47
TRIM28-214ENST00000600840 J3QL48 77 aa5.83□□□□□ -1.48
TRIM28-214ENST00000600840 XGP55808 180 aa5.83□□□□□ -1.48
TRIM28-214ENST00000600840 HERVK_113P61574 105 aa5.83□□□□□ -1.48
TRIM28-214ENST00000600840 UBE2V1Q13404 147 aa5.83□□□□□ -1.48
TRIM28-214ENST00000600840 ANKRD39Q53RE8 183 aa5.83□□□□□ -1.48
TRIM28-214ENST00000600840 ENHOQ6UWT2 76 aa5.83□□□□□ -1.48
TRIM28-214ENST00000600840 C2orf66Q6UXQ4 117 aa5.83□□□□□ -1.48
TRIM28-214ENST00000600840 C2orf91Q6ZV80 131 aa5.83□□□□□ -1.48
TRIM28-214ENST00000600840 CHCHD5Q9BSY4 110 aa5.83□□□□□ -1.48
TRIM28-214ENST00000600840 TIMM21Q9BVV7 248 aa5.83□□□□□ -1.48
TRIM28-214ENST00000600840 IGIPA6NJ69 53 aa5.82□□□□□ -1.48
TRIM28-214ENST00000600840 H3BRM9 83 aa5.82□□□□□ -1.48
TRIM28-214ENST00000600840 IGHV3-30P01768 117 aa5.82□□□□□ -1.48
TRIM28-214ENST00000600840 IGHV3-33P01772 117 aa5.82□□□□□ -1.48
TRIM28-214ENST00000600840 IGHV3-30-3P0DP02 117 aa5.82□□□□□ -1.48
TRIM28-214ENST00000600840 IGHV3-30-5P0DP03 117 aa5.82□□□□□ -1.48
TRIM28-214ENST00000600840 NMUP48645 174 aa5.82□□□□□ -1.48
TRIM28-214ENST00000600840 KRTAP10-1P60331 282 aa5.82□□□□□ -1.48
TRIM28-214ENST00000600840 RPL39P62891 51 aaKnown RBP5.82□□□□□ -1.48
TRIM28-214ENST00000600840 ZC2HC1BQ5TFG8 222 aa5.82□□□□□ -1.48
TRIM28-214ENST00000600840 KRTAP26-1Q6PEX3 210 aa5.82□□□□□ -1.48
TRIM28-214ENST00000600840 CDC42SE2Q9NRR3 84 aa5.82□□□□□ -1.48
TRIM28-214ENST00000600840 CHTOPQ9Y3Y2 248 aaKnown RBP5.82□□□□□ -1.48
TRIM28-214ENST00000600840 PYGO1Q9Y3Y4 419 aa5.82□□□□□ -1.48
TRIM28-214ENST00000600840 A0A087WTM6 91 aa5.81□□□□□ -1.48
TRIM28-214ENST00000600840 TMEM262E9PQX1 116 aa5.81□□□□□ -1.48
TRIM28-214ENST00000600840 SMR3BP02814 79 aaPredicted RBP5.81□□□□□ -1.48
TRIM28-214ENST00000600840 PTTG1IPP53801 180 aa5.81□□□□□ -1.48
TRIM28-214ENST00000600840 MRPL35Q9NZE8 188 aaKnown RBP5.81□□□□□ -1.48
TRIM28-214ENST00000600840 TAX1BP3O14907 124 aa5.8□□□□□ -1.48
TRIM28-214ENST00000600840 MRPS36P82909 103 aaKnown RBP5.8□□□□□ -1.48
TRIM28-214ENST00000600840 PMVKQ15126 192 aa5.8□□□□□ -1.48
TRIM28-214ENST00000600840 VAMP3Q15836 100 aa5.8□□□□□ -1.48
TRIM28-214ENST00000600840 GTF2H5Q6ZYL4 71 aa5.8□□□□□ -1.48
TRIM28-214ENST00000600840 OPRPNQ99935 248 aaPredicted RBP5.8□□□□□ -1.48
TRIM28-214ENST00000600840 KLK12Q9UKR0 248 aa5.8□□□□□ -1.48
TRIM28-214ENST00000600840 E9PLD3 99 aa5.79□□□□□ -1.48
TRIM28-214ENST00000600840 HAMPP81172 84 aa5.79□□□□□ -1.48
TRIM28-214ENST00000600840 SMAGPQ0VAQ4 97 aa5.79□□□□□ -1.48
TRIM28-214ENST00000600840 LINC00269Q8N2A0 174 aa5.79□□□□□ -1.48
TRIM28-214ENST00000600840 BAALCQ8WXS3 180 aa5.79□□□□□ -1.48
TRIM28-214ENST00000600840 SPANXA1Q9NS26 97 aa5.79□□□□□ -1.48
TRIM28-214ENST00000600840 PGPEP1Q9NXJ5 209 aa5.79□□□□□ -1.48
TRIM28-214ENST00000600840 MYCBP2O75592 4640 aa5.78□□□□□ -1.48
TRIM28-214ENST00000600840 IGLV4-3A0A075B6K6 122 aa5.78□□□□□ -1.48
TRIM28-214ENST00000600840 TMEM238LA0A1B0GVL6 79 aa5.78□□□□□ -1.48
TRIM28-214ENST00000600840 C9orf118A6NHY6 69 aa5.78□□□□□ -1.48
TRIM28-214ENST00000600840 A6NJY4 79 aa5.78□□□□□ -1.48
TRIM28-214ENST00000600840 ANGP03950 147 aaKnown RBP5.78□□□□□ -1.48
TRIM28-214ENST00000600840 REG3AQ06141 175 aa5.78□□□□□ -1.48
TRIM28-214ENST00000600840 Q6ZUT4 128 aa5.78□□□□□ -1.48
TRIM28-214ENST00000600840 C10orf126Q8N4M7 172 aa5.78□□□□□ -1.48
TRIM28-214ENST00000600840 OR5A1Q8NGJ0 315 aa5.78□□□□□ -1.48
TRIM28-214ENST00000600840 AMELXQ99217 191 aa5.78□□□□□ -1.48
TRIM28-214ENST00000600840 CHAC1Q9BUX1 264 aa5.78□□□□□ -1.48
TRIM28-214ENST00000600840 TM2D2Q9BX73 214 aa5.78□□□□□ -1.48
TRIM28-214ENST00000600840 MYMXA0A1B0GTQ4 84 aa5.77□□□□□ -1.49
TRIM28-214ENST00000600840 LRCOL1A6NCL2 159 aa5.77□□□□□ -1.49
TRIM28-214ENST00000600840 C11orf86A6NJI1 115 aa5.77□□□□□ -1.49
TRIM28-214ENST00000600840 UBE2L6O14933 153 aa5.77□□□□□ -1.49
TRIM28-214ENST00000600840 SMIM13P0DJ93 91 aa5.77□□□□□ -1.49
TRIM28-214ENST00000600840 NFE4Q86UQ8 179 aa5.77□□□□□ -1.49
TRIM28-214ENST00000600840 CEND1Q8N111 149 aa5.77□□□□□ -1.49
TRIM28-214ENST00000600840 UBE2WQ96B02 151 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms