RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 CHTOPQ9Y3Y2 248 aaKnown RBP8.54□□□□□ -1.04
UPF1-208ENST00000600012 IGKV3OR2-268A0A0C4DH90 116 aa8.53□□□□□ -1.04
UPF1-208ENST00000600012 A0A1B0GUV1 79 aa8.53□□□□□ -1.04
UPF1-208ENST00000600012 F8VRH5 84 aa8.53□□□□□ -1.04
UPF1-208ENST00000600012 PKIAP61925 76 aa8.53□□□□□ -1.04
UPF1-208ENST00000600012 CLPSL2Q6UWE3 100 aa8.53□□□□□ -1.04
UPF1-208ENST00000600012 C2orf88Q9BSF0 95 aa8.53□□□□□ -1.04
UPF1-208ENST00000600012 IGLV4-69A0A075B6H9 119 aa8.52□□□□□ -1.05
UPF1-208ENST00000600012 ANGP03950 147 aaKnown RBP8.52□□□□□ -1.05
UPF1-208ENST00000600012 SMIM6P0DI80 62 aa8.52□□□□□ -1.05
UPF1-208ENST00000600012 Q6ZRN7 208 aaPredicted RBP8.52□□□□□ -1.05
UPF1-208ENST00000600012 SIVA1O15304 175 aa8.51□□□□□ -1.05
UPF1-208ENST00000600012 UBE2D1P51668 147 aa8.51□□□□□ -1.05
UPF1-208ENST00000600012 PGPEP1Q9NXJ5 209 aa8.51□□□□□ -1.05
UPF1-208ENST00000600012 TRAV13-1A0A0B4J241 112 aa8.5□□□□□ -1.05
UPF1-208ENST00000600012 A0A0J9YXV3 536 aa8.5□□□□□ -1.05
UPF1-208ENST00000600012 C11orf86A6NJI1 115 aa8.5□□□□□ -1.05
UPF1-208ENST00000600012 EPM2AB3EWF7 344 aa8.5□□□□□ -1.05
UPF1-208ENST00000600012 EREGO14944 169 aa8.5□□□□□ -1.05
UPF1-208ENST00000600012 DPM2O94777 84 aa8.5□□□□□ -1.05
UPF1-208ENST00000600012 IGKCP01834 107 aa8.5□□□□□ -1.05
UPF1-208ENST00000600012 LINC00269Q8N2A0 174 aa8.5□□□□□ -1.05
UPF1-208ENST00000600012 CHAC1Q9BUX1 264 aa8.5□□□□□ -1.05
UPF1-208ENST00000600012 KLK12Q9UKR0 248 aa8.5□□□□□ -1.05
UPF1-208ENST00000600012 IGLC3P0DOY3 106 aa8.49□□□□□ -1.05
UPF1-208ENST00000600012 MAJINQ3KP22 176 aa8.49□□□□□ -1.05
UPF1-208ENST00000600012 LINC01556Q5JQF7 62 aa8.49□□□□□ -1.05
UPF1-208ENST00000600012 hDV102S1A0JD36 115 aa8.48□□□□□ -1.05
UPF1-208ENST00000600012 DNAH10OSP0CZ25 163 aa8.48□□□□□ -1.05
UPF1-208ENST00000600012 PLNP26678 52 aa8.48□□□□□ -1.05
UPF1-208ENST00000600012 REG3AQ06141 175 aa8.48□□□□□ -1.05
UPF1-208ENST00000600012 C12orf57Q99622 126 aa8.48□□□□□ -1.05
UPF1-208ENST00000600012 DMBT1Q9UGM3 2413 aaPredicted RBP8.47□□□□□ -1.05
UPF1-208ENST00000600012 LINC00959A0A1B0GUT2 108 aa8.47□□□□□ -1.05
UPF1-208ENST00000600012 TINCRA0A1B0GVN0 87 aa8.47□□□□□ -1.05
UPF1-208ENST00000600012 LINC00242Q5T6M2 205 aa8.47□□□□□ -1.05
UPF1-208ENST00000600012 NFE4Q86UQ8 179 aa8.47□□□□□ -1.05
UPF1-208ENST00000600012 LINC00518Q8N0U6 118 aa8.47□□□□□ -1.05
UPF1-208ENST00000600012 CRPP02741 224 aa8.46□□□□□ -1.06
UPF1-208ENST00000600012 ZNF22P17026 224 aaPredicted RBP8.46□□□□□ -1.06
UPF1-208ENST00000600012 COX6A2Q02221 97 aa8.46□□□□□ -1.06
UPF1-208ENST00000600012 ENHOQ6UWT2 76 aa8.46□□□□□ -1.06
UPF1-208ENST00000600012 FAM19A3Q7Z5A8 133 aa8.46□□□□□ -1.06
UPF1-208ENST00000600012 UBE2WQ96B02 151 aa8.46□□□□□ -1.06
UPF1-208ENST00000600012 GEMIN7Q9H840 131 aaKnown RBP8.46□□□□□ -1.06
UPF1-208ENST00000600012 PAM16Q9Y3D7 125 aa8.46□□□□□ -1.06
UPF1-208ENST00000600012 IGLV10-54A0A075B6I4 117 aa8.45□□□□□ -1.06
UPF1-208ENST00000600012 TRAV9-2A0A087WT02 112 aa8.45□□□□□ -1.06
UPF1-208ENST00000600012 SS18Q15532 418 aa8.45□□□□□ -1.06
UPF1-208ENST00000600012 TMEM170BQ5T4T1 132 aa8.45□□□□□ -1.06
UPF1-208ENST00000600012 STPG4Q8N801 248 aa8.45□□□□□ -1.06
UPF1-208ENST00000600012 VAMP8Q9BV40 100 aa8.45□□□□□ -1.06
UPF1-208ENST00000600012 PRR34Q9NV39 138 aa8.45□□□□□ -1.06
UPF1-208ENST00000600012 CCL25O15444 150 aa8.44□□□□□ -1.06
UPF1-208ENST00000600012 INAFM2P0DMQ5 153 aa8.44□□□□□ -1.06
UPF1-208ENST00000600012 XGP55808 180 aa8.44□□□□□ -1.06
UPF1-208ENST00000600012 HERVK_113P63121 156 aa8.44□□□□□ -1.06
UPF1-208ENST00000600012 ANKRD39Q53RE8 183 aa8.44□□□□□ -1.06
UPF1-208ENST00000600012 LINC00469Q8N7U9 141 aa8.44□□□□□ -1.06
UPF1-208ENST00000600012 CDKN2A-AS1Q9UH64 79 aa8.44□□□□□ -1.06
UPF1-208ENST00000600012 A0A087WTM6 91 aa8.43□□□□□ -1.06
UPF1-208ENST00000600012 K7EP13 123 aa8.43□□□□□ -1.06
UPF1-208ENST00000600012 FUSP35637 526 aaKnown RBP eCLIP8.43□□□□□ -1.06
UPF1-208ENST00000600012 XCL1P47992 114 aa8.43□□□□□ -1.06
UPF1-208ENST00000600012 S100A12P80511 92 aa8.43□□□□□ -1.06
UPF1-208ENST00000600012 SPATA45Q537H7 98 aa8.43□□□□□ -1.06
UPF1-208ENST00000600012 CHCHD10Q8WYQ3 142 aaPredicted RBP8.43□□□□□ -1.06
UPF1-208ENST00000600012 IGHV3-64A0A075B6Q5 118 aa8.42□□□□□ -1.06
UPF1-208ENST00000600012 IGLV5-45A0A087WSX0 123 aa8.42□□□□□ -1.06
UPF1-208ENST00000600012 HSBP1L1C9JCN9 74 aa8.42□□□□□ -1.06
UPF1-208ENST00000600012 SPINK8P0C7L1 97 aa8.42□□□□□ -1.06
UPF1-208ENST00000600012 SEC11AP67812 179 aa8.42□□□□□ -1.06
UPF1-208ENST00000600012 Q5VSD8 79 aa8.42□□□□□ -1.06
UPF1-208ENST00000600012 Q9HAA7 133 aa8.42□□□□□ -1.06
UPF1-208ENST00000600012 HERC1Q15751 4861 aa8.41□□□□□ -1.06
UPF1-208ENST00000600012 TMEM223A0PJW6 202 aa8.41□□□□□ -1.06
UPF1-208ENST00000600012 KRTAP10-1P60331 282 aa8.41□□□□□ -1.06
UPF1-208ENST00000600012 MIAQ16674 131 aa8.41□□□□□ -1.06
UPF1-208ENST00000600012 IGKV2D-26A0A0A0MRZ7 120 aa8.4□□□□□ -1.06
UPF1-208ENST00000600012 TRAV8-3A0A0A6YYJ7 113 aa8.4□□□□□ -1.06
UPF1-208ENST00000600012 IGHV3OR16-9A0A0B4J2B5 98 aa8.4□□□□□ -1.06
UPF1-208ENST00000600012 GAGE12HA6NDE8 117 aa8.4□□□□□ -1.06
UPF1-208ENST00000600012 IBA57-AS1B1ANH7 110 aa8.4□□□□□ -1.06
UPF1-208ENST00000600012 HERVK_113P61574 105 aa8.4□□□□□ -1.06
UPF1-208ENST00000600012 C5orf38Q86SI9 138 aa8.4□□□□□ -1.06
UPF1-208ENST00000600012 C10orf126Q8N4M7 172 aa8.4□□□□□ -1.06
UPF1-208ENST00000600012 FLG2Q5D862 2391 aaPredicted RBP8.4□□□□□ -1.07
UPF1-208ENST00000600012 H3BRM9 83 aa8.39□□□□□ -1.07
UPF1-208ENST00000600012 FOXI1Q12951 378 aa8.39□□□□□ -1.07
UPF1-208ENST00000600012 CD164L2Q6UWJ8 174 aa8.39□□□□□ -1.07
UPF1-208ENST00000600012 PRO1933Q9H354 126 aa8.39□□□□□ -1.07
UPF1-208ENST00000600012 IGKV2D-24A0A075B6R9 120 aa8.38□□□□□ -1.07
UPF1-208ENST00000600012 TRAV8-4A0A0B4J246 113 aa8.38□□□□□ -1.07
UPF1-208ENST00000600012 SMIM1B2RUZ4 78 aa8.38□□□□□ -1.07
UPF1-208ENST00000600012 E9PLD3 99 aa8.38□□□□□ -1.07
UPF1-208ENST00000600012 GCSHP23434 173 aa8.38□□□□□ -1.07
UPF1-208ENST00000600012 NMUP48645 174 aa8.38□□□□□ -1.07
UPF1-208ENST00000600012 KRTAP26-1Q6PEX3 210 aa8.38□□□□□ -1.07
UPF1-208ENST00000600012 C1orf43Q9BWL3 253 aa8.38□□□□□ -1.07
UPF1-208ENST00000600012 TP73-AS1Q9UF72 201 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms