RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 AMMECR1LQ6DCA0 310 aa7.12□□□□□ -1.27
VPS4B-204ENST00000589604 FAM19A3Q7Z5A8 133 aa7.12□□□□□ -1.27
VPS4B-204ENST00000589604 C15orf53Q8NAA6 179 aa7.12□□□□□ -1.27
VPS4B-204ENST00000589604 SMAGPQ0VAQ4 97 aa7.11□□□□□ -1.27
VPS4B-204ENST00000589604 PKIAP61925 76 aa7.1□□□□□ -1.27
VPS4B-204ENST00000589604 COX6A2Q02221 97 aa7.1□□□□□ -1.27
VPS4B-204ENST00000589604 TMEM101Q96IK0 257 aa7.1□□□□□ -1.27
VPS4B-204ENST00000589604 LINC00588Q9Y4M8 146 aa7.1□□□□□ -1.27
VPS4B-204ENST00000589604 IGKV2D-26A0A0A0MRZ7 120 aa7.09□□□□□ -1.27
VPS4B-204ENST00000589604 TINCRA0A1B0GVN0 87 aa7.09□□□□□ -1.27
VPS4B-204ENST00000589604 TMEM262E9PQX1 116 aa7.09□□□□□ -1.27
VPS4B-204ENST00000589604 LY6G6CO95867 125 aa7.09□□□□□ -1.27
VPS4B-204ENST00000589604 ZNF22P17026 224 aaPredicted RBP7.09□□□□□ -1.27
VPS4B-204ENST00000589604 LINC00242Q5T6M2 205 aa7.09□□□□□ -1.27
VPS4B-204ENST00000589604 C2orf88Q9BSF0 95 aa7.09□□□□□ -1.27
VPS4B-204ENST00000589604 CHAC1Q9BUX1 264 aa7.09□□□□□ -1.27
VPS4B-204ENST00000589604 DNAH6Q9C0G6 4158 aa7.08□□□□□ -1.28
VPS4B-204ENST00000589604 IGLV5-45A0A087WSX0 123 aa7.08□□□□□ -1.28
VPS4B-204ENST00000589604 F8WDY8 70 aa7.08□□□□□ -1.28
VPS4B-204ENST00000589604 WFDC10BQ8IUB3 73 aa7.08□□□□□ -1.28
VPS4B-204ENST00000589604 C14orf144Q96I85 54 aa7.08□□□□□ -1.28
VPS4B-204ENST00000589604 TP73-AS1Q9UF72 201 aa7.08□□□□□ -1.28
VPS4B-204ENST00000589604 TRAV13-1A0A0B4J241 112 aa7.07□□□□□ -1.28
VPS4B-204ENST00000589604 TMEM223A0PJW6 202 aa7.07□□□□□ -1.28
VPS4B-204ENST00000589604 HSBP1L1C9JCN9 74 aa7.07□□□□□ -1.28
VPS4B-204ENST00000589604 TRIAP1O43715 76 aa7.07□□□□□ -1.28
VPS4B-204ENST00000589604 TRAV8-6A0A0B4J262 113 aa7.06□□□□□ -1.28
VPS4B-204ENST00000589604 LOC100996750A0A140TA64 210 aa7.06□□□□□ -1.28
VPS4B-204ENST00000589604 LINC00959A0A1B0GUT2 108 aa7.06□□□□□ -1.28
VPS4B-204ENST00000589604 E9PLD3 99 aa7.06□□□□□ -1.28
VPS4B-204ENST00000589604 COX8AP10176 69 aa7.06□□□□□ -1.28
VPS4B-204ENST00000589604 TMEM170BQ5T4T1 132 aa7.06□□□□□ -1.28
VPS4B-204ENST00000589604 KRTAP4-6Q9BYQ5 205 aa7.06□□□□□ -1.28
VPS4B-204ENST00000589604 CDKN2A-AS1Q9UH64 79 aa7.06□□□□□ -1.28
VPS4B-204ENST00000589604 PCP4L1A6NKN8 68 aa7.06□□□□□ -1.28
VPS4B-204ENST00000589604 TSTD3H0UI37 97 aa7.06□□□□□ -1.28
VPS4B-204ENST00000589604 PCP2Q8IVA1 136 aa7.06□□□□□ -1.28
VPS4B-204ENST00000589604 LINC00269Q8N2A0 174 aa7.06□□□□□ -1.28
VPS4B-204ENST00000589604 MIEN1Q9BRT3 115 aa7.06□□□□□ -1.28
VPS4B-204ENST00000589604 TTTY13Q9BZ97 58 aa7.06□□□□□ -1.28
VPS4B-204ENST00000589604 MAPKAPK5-AS1Q8N8E1 139 aa7.05□□□□□ -1.28
VPS4B-204ENST00000589604 PRR34Q9NV39 138 aa7.05□□□□□ -1.28
VPS4B-204ENST00000589604 MRPS16Q9Y3D3 137 aaKnown RBP7.05□□□□□ -1.28
VPS4B-204ENST00000589604 DNAH2Q9P225 4427 aa7.04□□□□□ -1.28
VPS4B-204ENST00000589604 IGHV3OR16-9A0A0B4J2B5 98 aa7.04□□□□□ -1.28
VPS4B-204ENST00000589604 IGKV3OR2-268A0A0C4DH90 116 aa7.04□□□□□ -1.28
VPS4B-204ENST00000589604 IGHV3-30P01768 117 aa7.04□□□□□ -1.28
VPS4B-204ENST00000589604 IGHV3-33P01772 117 aa7.04□□□□□ -1.28
VPS4B-204ENST00000589604 ANGP03950 147 aaKnown RBP7.04□□□□□ -1.28
VPS4B-204ENST00000589604 IGHV3-30-3P0DP02 117 aa7.04□□□□□ -1.28
VPS4B-204ENST00000589604 IGHV3-30-5P0DP03 117 aa7.04□□□□□ -1.28
VPS4B-204ENST00000589604 CCL18P55774 89 aa7.04□□□□□ -1.28
VPS4B-204ENST00000589604 TSPEAR-AS2P59090 65 aa7.04□□□□□ -1.28
VPS4B-204ENST00000589604 HERVK_113P63121 156 aa7.04□□□□□ -1.28
VPS4B-204ENST00000589604 CLPSL2Q6UWE3 100 aa7.04□□□□□ -1.28
VPS4B-204ENST00000589604 ENHOQ6UWT2 76 aa7.04□□□□□ -1.28
VPS4B-204ENST00000589604 UBE2DNLQ8IWF7 75 aa7.04□□□□□ -1.28
VPS4B-204ENST00000589604 BOD1L2Q8IYS8 172 aa7.04□□□□□ -1.28
VPS4B-204ENST00000589604 GEMIN7Q9H840 131 aaKnown RBP7.04□□□□□ -1.28
VPS4B-204ENST00000589604 DLEU1O43261 78 aa7.03□□□□□ -1.28
VPS4B-204ENST00000589604 DDTP30046 118 aa7.03□□□□□ -1.28
VPS4B-204ENST00000589604 NMUP48645 174 aa7.03□□□□□ -1.28
VPS4B-204ENST00000589604 SEC11AP67812 179 aa7.03□□□□□ -1.28
VPS4B-204ENST00000589604 REG3AQ06141 175 aa7.03□□□□□ -1.28
VPS4B-204ENST00000589604 LINC01556Q5JQF7 62 aa7.03□□□□□ -1.28
VPS4B-204ENST00000589604 LINC00469Q8N7U9 141 aa7.03□□□□□ -1.28
VPS4B-204ENST00000589604 KRTAP1-5Q9BYS1 174 aa7.03□□□□□ -1.28
VPS4B-204ENST00000589604 UQCR10Q9UDW1 63 aa7.03□□□□□ -1.28
VPS4B-204ENST00000589604 KLK12Q9UKR0 248 aa7.03□□□□□ -1.28
VPS4B-204ENST00000589604 TRAV8-3A0A0A6YYJ7 113 aa7.03□□□□□ -1.28
VPS4B-204ENST00000589604 IGLV5-39A0A0G2JS06 123 aa7.03□□□□□ -1.28
VPS4B-204ENST00000589604 LINC00587B1AMM8 73 aa7.03□□□□□ -1.28
VPS4B-204ENST00000589604 SPINK8P0C7L1 97 aa7.03□□□□□ -1.28
VPS4B-204ENST00000589604 DNAH10OSP0CZ25 163 aa7.03□□□□□ -1.28
VPS4B-204ENST00000589604 SLC25A34Q6PIV7 304 aa7.03□□□□□ -1.28
VPS4B-204ENST00000589604 UPK3BQ9BT76 320 aa7.03□□□□□ -1.28
VPS4B-204ENST00000589604 SMIM1B2RUZ4 78 aa7.02□□□□□ -1.29
VPS4B-204ENST00000589604 LEPROTO15243 131 aa7.02□□□□□ -1.29
VPS4B-204ENST00000589604 CCL25O15444 150 aa7.02□□□□□ -1.29
VPS4B-204ENST00000589604 C2orf91Q6ZV80 131 aa7.02□□□□□ -1.29
VPS4B-204ENST00000589604 FRAS1Q86XX4 4008 aa7.02□□□□□ -1.29
VPS4B-204ENST00000589604 IGHV3-64A0A075B6Q5 118 aa7.01□□□□□ -1.29
VPS4B-204ENST00000589604 IGHV1-58A0A0C4DH39 117 aa7.01□□□□□ -1.29
VPS4B-204ENST00000589604 M0R2N4 97 aa7.01□□□□□ -1.29
VPS4B-204ENST00000589604 VPREB1P12018 145 aa7.01□□□□□ -1.29
VPS4B-204ENST00000589604 HERVK_113P61574 105 aa7.01□□□□□ -1.29
VPS4B-204ENST00000589604 SS18Q15532 418 aa7.01□□□□□ -1.29
VPS4B-204ENST00000589604 KRTAP26-1Q6PEX3 210 aa7.01□□□□□ -1.29
VPS4B-204ENST00000589604 Q9H8V8 135 aa7.01□□□□□ -1.29
VPS4B-204ENST00000589604 A0A087WZ39 114 aa7□□□□□ -1.29
VPS4B-204ENST00000589604 J3QQQ9 107 aa7□□□□□ -1.29
VPS4B-204ENST00000589604 Q6ZR54 194 aa7□□□□□ -1.29
VPS4B-204ENST00000589604 CHCHD10Q8WYQ3 142 aaPredicted RBP7□□□□□ -1.29
VPS4B-204ENST00000589604 IGLV10-54A0A075B6I4 117 aa7□□□□□ -1.29
VPS4B-204ENST00000589604 H3BRM9 83 aa7□□□□□ -1.29
VPS4B-204ENST00000589604 LCE2BO14633 110 aa7□□□□□ -1.29
VPS4B-204ENST00000589604 SIVA1O15304 175 aa7□□□□□ -1.29
VPS4B-204ENST00000589604 XCL1P47992 114 aa7□□□□□ -1.29
VPS4B-204ENST00000589604 FOXI1Q12951 378 aa7□□□□□ -1.29
VPS4B-204ENST00000589604 C5orf38Q86SI9 138 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms