RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 WNK1Q9H4A3 2382 aa8.66□□□□□ -1.02
SHMT1-208ENST00000582352 CHD6Q8TD26 2715 aa8.66□□□□□ -1.02
SHMT1-208ENST00000582352 TRGV2A0A075B6R0 118 aa8.66□□□□□ -1.02
SHMT1-208ENST00000582352 Q9HAA7 133 aa8.66□□□□□ -1.02
SHMT1-208ENST00000582352 SND1-IT1Q9HBX3 110 aa8.66□□□□□ -1.02
SHMT1-208ENST00000582352 FBN2P35556 2912 aa8.66□□□□□ -1.02
SHMT1-208ENST00000582352 C2CD3Q4AC94 2353 aa8.66□□□□□ -1.02
SHMT1-208ENST00000582352 A0A1W2PRX2 142 aa8.65□□□□□ -1.02
SHMT1-208ENST00000582352 DNAL4O96015 105 aa8.65□□□□□ -1.02
SHMT1-208ENST00000582352 GAGE2AQ6NT46 116 aa8.65□□□□□ -1.02
SHMT1-208ENST00000582352 OVOL2Q9BRP0 275 aa8.65□□□□□ -1.02
SHMT1-208ENST00000582352 FAM208BQ5VWN6 2430 aa8.65□□□□□ -1.02
SHMT1-208ENST00000582352 NOTCH3Q9UM47 2321 aa8.65□□□□□ -1.03
SHMT1-208ENST00000582352 IGKV3OR2-268A0A0C4DH90 116 aa8.65□□□□□ -1.03
SHMT1-208ENST00000582352 LINC00337Q8N6G1 96 aa8.65□□□□□ -1.03
SHMT1-208ENST00000582352 MALP21145 153 aa8.64□□□□□ -1.03
SHMT1-208ENST00000582352 C11orf44Q8N8P7 122 aa8.64□□□□□ -1.03
SHMT1-208ENST00000582352 C22orf24Q9Y442 160 aa8.64□□□□□ -1.03
SHMT1-208ENST00000582352 CACNA1AO00555 2505 aa8.64□□□□□ -1.03
SHMT1-208ENST00000582352 TEX15Q9BXT5 2789 aa8.63□□□□□ -1.03
SHMT1-208ENST00000582352 LINC00158P58513 81 aa8.63□□□□□ -1.03
SHMT1-208ENST00000582352 SMIM20Q8N5G0 67 aa8.63□□□□□ -1.03
SHMT1-208ENST00000582352 C16orf74Q96GX8 76 aa8.63□□□□□ -1.03
SHMT1-208ENST00000582352 LOC100131303A0A0U1RQF7 123 aa8.63□□□□□ -1.03
SHMT1-208ENST00000582352 IGKV2-28A0A075B6P5 120 aa8.62□□□□□ -1.03
SHMT1-208ENST00000582352 IGKV2D-28P01615 120 aa8.62□□□□□ -1.03
SHMT1-208ENST00000582352 SDIM1Q6ZPB5 146 aa8.62□□□□□ -1.03
SHMT1-208ENST00000582352 NAV2Q8IVL1 2488 aa8.62□□□□□ -1.03
SHMT1-208ENST00000582352 CCL24O00175 119 aa8.62□□□□□ -1.03
SHMT1-208ENST00000582352 PTPN13Q12923 2485 aa8.62□□□□□ -1.03
SHMT1-208ENST00000582352 TRGV4A0A0C4DH28 118 aa8.61□□□□□ -1.03
SHMT1-208ENST00000582352 PIEZO1Q92508 2521 aa8.61□□□□□ -1.03
SHMT1-208ENST00000582352 TRBV6-4A0A1B0GX49 114 aa8.61□□□□□ -1.03
SHMT1-208ENST00000582352 CXCL5P42830 114 aa8.61□□□□□ -1.03
SHMT1-208ENST00000582352 C3orf56Q8N813 242 aa8.61□□□□□ -1.03
SHMT1-208ENST00000582352 SMIM11BQ8TCY0 68 aa8.61□□□□□ -1.03
SHMT1-208ENST00000582352 TMEM126AQ9H061 195 aa8.61□□□□□ -1.03
SHMT1-208ENST00000582352 LRRK2Q5S007 2527 aa8.61□□□□□ -1.03
SHMT1-208ENST00000582352 EPG5Q9HCE0 2579 aa8.61□□□□□ -1.03
SHMT1-208ENST00000582352 ATP5G1P05496 136 aa8.61□□□□□ -1.03
SHMT1-208ENST00000582352 A0A087WYN8 130 aa8.6□□□□□ -1.03
SHMT1-208ENST00000582352 FAM110AQ9BQ89 295 aa8.6□□□□□ -1.03
SHMT1-208ENST00000582352 CUBNO60494 3623 aa8.6□□□□□ -1.03
SHMT1-208ENST00000582352 TLN2Q9Y4G6 2542 aa8.6□□□□□ -1.03
SHMT1-208ENST00000582352 IGLV4-60A0A075B6I1 120 aa8.59□□□□□ -1.03
SHMT1-208ENST00000582352 PLAC8L1A1L4L8 177 aa8.59□□□□□ -1.03
SHMT1-208ENST00000582352 IBA57-AS1B1ANH7 110 aa8.59□□□□□ -1.03
SHMT1-208ENST00000582352 CCL18P55774 89 aa8.59□□□□□ -1.03
SHMT1-208ENST00000582352 C9orf153Q5TBE3 101 aa8.59□□□□□ -1.03
SHMT1-208ENST00000582352 TMEM86BQ8N661 226 aa8.59□□□□□ -1.03
SHMT1-208ENST00000582352 ABCA12Q86UK0 2595 aa8.59□□□□□ -1.03
SHMT1-208ENST00000582352 H0YGX0 51 aa8.59□□□□□ -1.03
SHMT1-208ENST00000582352 GIG44P09565 113 aaPredicted RBP8.59□□□□□ -1.03
SHMT1-208ENST00000582352 PFN2P35080 140 aa8.59□□□□□ -1.03
SHMT1-208ENST00000582352 DEFB113Q30KQ7 82 aa8.59□□□□□ -1.03
SHMT1-208ENST00000582352 JMJD1CQ15652 2540 aa8.58□□□□□ -1.04
SHMT1-208ENST00000582352 TRBV6-8A0A0A6YYG3 113 aa8.58□□□□□ -1.04
SHMT1-208ENST00000582352 IGHV3OR16-9A0A0B4J2B5 98 aa8.58□□□□□ -1.04
SHMT1-208ENST00000582352 RPL35AP18077 110 aaKnown RBP8.58□□□□□ -1.04
SHMT1-208ENST00000582352 C5orf38Q86SI9 138 aa8.58□□□□□ -1.04
SHMT1-208ENST00000582352 C3orf22Q8N5N4 141 aa8.58□□□□□ -1.04
SHMT1-208ENST00000582352 WFDC10AQ9H1F0 79 aa8.58□□□□□ -1.04
SHMT1-208ENST00000582352 AKAP9Q99996 3911 aa8.58□□□□□ -1.04
SHMT1-208ENST00000582352 A0A087WZ39 114 aa8.57□□□□□ -1.04
SHMT1-208ENST00000582352 DNAJC9-AS1A6NH13 148 aa8.57□□□□□ -1.04
SHMT1-208ENST00000582352 UQCRQO14949 82 aa8.57□□□□□ -1.04
SHMT1-208ENST00000582352 PAX4O43316 350 aa8.57□□□□□ -1.04
SHMT1-208ENST00000582352 CMC4P56277 68 aaPredicted RBP8.57□□□□□ -1.04
SHMT1-208ENST00000582352 KRTAP10-9P60411 292 aa8.57□□□□□ -1.04
SHMT1-208ENST00000582352 C14orf132Q9NPU4 83 aa8.57□□□□□ -1.04
SHMT1-208ENST00000582352 OR13C6PQ8NH95 151 aa8.57□□□□□ -1.04
SHMT1-208ENST00000582352 LECT2O14960 151 aa8.56□□□□□ -1.04
SHMT1-208ENST00000582352 LRRC75A-AS1Q8N1F1 130 aa8.56□□□□□ -1.04
SHMT1-208ENST00000582352 C11orf68Q9H3H3 251 aaKnown RBP8.56□□□□□ -1.04
SHMT1-208ENST00000582352 SONP18583 2426 aaKnown RBP8.56□□□□□ -1.04
SHMT1-208ENST00000582352 SETXQ7Z333 2677 aaKnown RBP8.56□□□□□ -1.04
SHMT1-208ENST00000582352 C9orf129Q5T035 196 aaKnown RBP8.55□□□□□ -1.04
SHMT1-208ENST00000582352 C6orf226Q5I0X4 101 aa8.54□□□□□ -1.04
SHMT1-208ENST00000582352 LINC00526Q96FQ7 95 aa8.54□□□□□ -1.04
SHMT1-208ENST00000582352 ZNF462Q96JM2 2506 aa8.54□□□□□ -1.04
SHMT1-208ENST00000582352 FHL2Q14192 279 aa8.54□□□□□ -1.04
SHMT1-208ENST00000582352 PLA2G2AP14555 144 aa8.53□□□□□ -1.04
SHMT1-208ENST00000582352 KLK5Q9Y337 293 aaPredicted RBP8.53□□□□□ -1.04
SHMT1-208ENST00000582352 LINC00959A0A1B0GUT2 108 aa8.53□□□□□ -1.04
SHMT1-208ENST00000582352 ATOX1O00244 68 aa8.53□□□□□ -1.04
SHMT1-208ENST00000582352 PRB1P04280 392 aa8.53□□□□□ -1.04
SHMT1-208ENST00000582352 OBSCN-AS1Q96MR7 158 aa8.53□□□□□ -1.04
SHMT1-208ENST00000582352 CSNK1G2-AS1Q8NCQ2 148 aa8.52□□□□□ -1.05
SHMT1-208ENST00000582352 NF1P21359 2839 aa8.52□□□□□ -1.05
SHMT1-208ENST00000582352 NCR3O14931 201 aa8.52□□□□□ -1.05
SHMT1-208ENST00000582352 COX7CP15954 63 aa8.52□□□□□ -1.05
SHMT1-208ENST00000582352 XCL1P47992 114 aa8.52□□□□□ -1.05
SHMT1-208ENST00000582352 SETD2Q9BYW2 2564 aaPredicted RBP8.52□□□□□ -1.05
SHMT1-208ENST00000582352 NIPBLQ6KC79 2804 aaeCLIP8.52□□□□□ -1.05
SHMT1-208ENST00000582352 HIST1H4AP62805 103 aaKnown RBP8.51□□□□□ -1.05
SHMT1-208ENST00000582352 ORMDL1Q9P0S3 153 aa8.51□□□□□ -1.05
SHMT1-208ENST00000582352 ZFYVE26Q68DK2 2539 aa8.51□□□□□ -1.05
SHMT1-208ENST00000582352 LY6G6DO95868 133 aa8.51□□□□□ -1.05
SHMT1-208ENST00000582352 SLPIP03973 132 aa8.51□□□□□ -1.05
SHMT1-208ENST00000582352 Q6JHZ5 121 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms