RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 M0R143 59 aa7.02□□□□□ -1.29
SS18-207ENST00000577636 DLEU1O43261 78 aa7.02□□□□□ -1.29
SS18-207ENST00000577636 C1orf134Q5TEV5 83 aa7.02□□□□□ -1.29
SS18-207ENST00000577636 Q6ZUT4 128 aa7.02□□□□□ -1.29
SS18-207ENST00000577636 DNAH11Q96DT5 4516 aa7.01□□□□□ -1.29
SS18-207ENST00000577636 TINCRA0A1B0GVN0 87 aa7.01□□□□□ -1.29
SS18-207ENST00000577636 TMEM262E9PQX1 116 aa7.01□□□□□ -1.29
SS18-207ENST00000577636 H3BNG1 76 aa7.01□□□□□ -1.29
SS18-207ENST00000577636 SIVA1O15304 175 aa7.01□□□□□ -1.29
SS18-207ENST00000577636 CTAG1AP78358 180 aa7.01□□□□□ -1.29
SS18-207ENST00000577636 GAGE6Q13070 117 aa7.01□□□□□ -1.29
SS18-207ENST00000577636 BOD1L2Q8IYS8 172 aa7.01□□□□□ -1.29
SS18-207ENST00000577636 VSIG2Q96IQ7 327 aa7.01□□□□□ -1.29
SS18-207ENST00000577636 A0A096LPF7 62 aa7□□□□□ -1.29
SS18-207ENST00000577636 TRAV8-6A0A0B4J262 113 aa7□□□□□ -1.29
SS18-207ENST00000577636 A0A0J9YXV3 536 aa7□□□□□ -1.29
SS18-207ENST00000577636 E9PLD3 99 aa7□□□□□ -1.29
SS18-207ENST00000577636 HERVK_113P63121 156 aa7□□□□□ -1.29
SS18-207ENST00000577636 LBHQ53QV2 105 aaPredicted RBP7□□□□□ -1.29
SS18-207ENST00000577636 RNASE13Q5GAN3 156 aaKnown RBP7□□□□□ -1.29
SS18-207ENST00000577636 Q6ZR54 194 aa7□□□□□ -1.29
SS18-207ENST00000577636 CDC42SE2Q9NRR3 84 aa7□□□□□ -1.29
SS18-207ENST00000577636 NACAE9PAV3 2078 aa7□□□□□ -1.29
SS18-207ENST00000577636 LGALS3P17931 250 aaKnown RBP6.99□□□□□ -1.29
SS18-207ENST00000577636 TNP2Q05952 138 aa6.99□□□□□ -1.29
SS18-207ENST00000577636 LINC00469Q8N7U9 141 aa6.99□□□□□ -1.29
SS18-207ENST00000577636 PLEKHB2Q96CS7 222 aa6.99□□□□□ -1.29
SS18-207ENST00000577636 PKD1P98161 4303 aa6.98□□□□□ -1.29
SS18-207ENST00000577636 LCE2BO14633 110 aa6.98□□□□□ -1.29
SS18-207ENST00000577636 UBE2D1P51668 147 aa6.98□□□□□ -1.29
SS18-207ENST00000577636 TIRAPP58753 221 aa6.98□□□□□ -1.29
SS18-207ENST00000577636 LELP1Q5T871 98 aa6.98□□□□□ -1.29
SS18-207ENST00000577636 PCP2Q8IVA1 136 aa6.98□□□□□ -1.29
SS18-207ENST00000577636 HSPG2P98160 4391 aa6.97□□□□□ -1.29
SS18-207ENST00000577636 IGKV2D-26A0A0A0MRZ7 120 aa6.97□□□□□ -1.29
SS18-207ENST00000577636 TRAV13-1A0A0B4J241 112 aa6.97□□□□□ -1.29
SS18-207ENST00000577636 MYMXA0A1B0GTQ4 84 aa6.97□□□□□ -1.29
SS18-207ENST00000577636 A0A1B0GUV1 79 aa6.97□□□□□ -1.29
SS18-207ENST00000577636 TMEM223A0PJW6 202 aa6.97□□□□□ -1.29
SS18-207ENST00000577636 LEPROTO15243 131 aa6.97□□□□□ -1.29
SS18-207ENST00000577636 ZNF22P17026 224 aaPredicted RBP6.97□□□□□ -1.29
SS18-207ENST00000577636 BATFQ16520 125 aa6.97□□□□□ -1.29
SS18-207ENST00000577636 SCGB1D4Q6XE38 83 aa6.97□□□□□ -1.29
SS18-207ENST00000577636 ZNF815PA8K554 130 aa6.96□□□□□ -1.3
SS18-207ENST00000577636 J3QQQ9 107 aa6.96□□□□□ -1.3
SS18-207ENST00000577636 CCL25O15444 150 aa6.96□□□□□ -1.3
SS18-207ENST00000577636 CDK2AP2O75956 126 aa6.96□□□□□ -1.3
SS18-207ENST00000577636 SS18Q15532 418 aa6.96□□□□□ -1.3
SS18-207ENST00000577636 FAM19A3Q7Z5A8 133 aa6.96□□□□□ -1.3
SS18-207ENST00000577636 FAM104AQ969W3 186 aa6.96□□□□□ -1.3
SS18-207ENST00000577636 HIGD1BQ9P298 99 aa6.96□□□□□ -1.3
SS18-207ENST00000577636 RBX1P62877 108 aa6.95□□□□□ -1.3
SS18-207ENST00000577636 HSD52Q0P140 79 aa6.95□□□□□ -1.3
SS18-207ENST00000577636 IGHV1-58A0A0C4DH39 117 aa6.94□□□□□ -1.3
SS18-207ENST00000577636 IGKV3OR2-268A0A0C4DH90 116 aa6.94□□□□□ -1.3
SS18-207ENST00000577636 HINT1P49773 126 aaPredicted RBP6.94□□□□□ -1.3
SS18-207ENST00000577636 COL5A1-AS1Q5SY13 56 aa6.94□□□□□ -1.3
SS18-207ENST00000577636 LINC00242Q5T6M2 205 aa6.94□□□□□ -1.3
SS18-207ENST00000577636 C2orf91Q6ZV80 131 aa6.94□□□□□ -1.3
SS18-207ENST00000577636 Q8N1X5 172 aa6.94□□□□□ -1.3
SS18-207ENST00000577636 C15orf53Q8NAA6 179 aa6.94□□□□□ -1.3
SS18-207ENST00000577636 IGLV4-60A0A075B6I1 120 aa6.93□□□□□ -1.3
SS18-207ENST00000577636 IGHV3-64A0A075B6Q5 118 aa6.93□□□□□ -1.3
SS18-207ENST00000577636 IGLV5-45A0A087WSX0 123 aa6.93□□□□□ -1.3
SS18-207ENST00000577636 ANGP03950 147 aaKnown RBP6.93□□□□□ -1.3
SS18-207ENST00000577636 SPINK8P0C7L1 97 aa6.93□□□□□ -1.3
SS18-207ENST00000577636 TAL2Q16559 108 aa6.93□□□□□ -1.3
SS18-207ENST00000577636 MPV17L2Q567V2 206 aa6.93□□□□□ -1.3
SS18-207ENST00000577636 LYPD5Q6UWN5 251 aa6.93□□□□□ -1.3
SS18-207ENST00000577636 C6orf223Q8N319 242 aa6.93□□□□□ -1.3
SS18-207ENST00000577636 SNHG12Q9BXW3 62 aa6.93□□□□□ -1.3
SS18-207ENST00000577636 CDKN2A-AS1Q9UH64 79 aa6.93□□□□□ -1.3
SS18-207ENST00000577636 A6NDN8 102 aa6.92□□□□□ -1.3
SS18-207ENST00000577636 EREGO14944 169 aa6.92□□□□□ -1.3
SS18-207ENST00000577636 IGHV3-30-3P0DP02 117 aa6.92□□□□□ -1.3
SS18-207ENST00000577636 HIST1H4GQ99525 98 aa6.92□□□□□ -1.3
SS18-207ENST00000577636 TTTY13Q9BZ97 58 aa6.92□□□□□ -1.3
SS18-207ENST00000577636 TP73-AS1Q9UF72 201 aa6.92□□□□□ -1.3
SS18-207ENST00000577636 NBDYA0A0U1RRE5 68 aa6.91□□□□□ -1.3
SS18-207ENST00000577636 LINC00959A0A1B0GUT2 108 aa6.91□□□□□ -1.3
SS18-207ENST00000577636 CRPP02741 224 aa6.91□□□□□ -1.3
SS18-207ENST00000577636 SRSF9Q13242 221 aaKnown RBP eCLIP6.91□□□□□ -1.3
SS18-207ENST00000577636 LRP1BQ9NZR2 4599 aa6.9□□□□□ -1.3
SS18-207ENST00000577636 TMEM238C9JI98 176 aa6.9□□□□□ -1.3
SS18-207ENST00000577636 GCSHP23434 173 aa6.9□□□□□ -1.3
SS18-207ENST00000577636 PTTG1IPP53801 180 aa6.9□□□□□ -1.3
SS18-207ENST00000577636 COX6A2Q02221 97 aa6.9□□□□□ -1.3
SS18-207ENST00000577636 REG3AQ06141 175 aa6.9□□□□□ -1.3
SS18-207ENST00000577636 BVES-AS1Q5T3Y7 98 aa6.9□□□□□ -1.3
SS18-207ENST00000577636 LINC00269Q8N2A0 174 aa6.9□□□□□ -1.3
SS18-207ENST00000577636 ORAOV1Q8WV07 137 aa6.9□□□□□ -1.3
SS18-207ENST00000577636 NDUFA12Q9UI09 145 aa6.9□□□□□ -1.3
SS18-207ENST00000577636 TRAV8-3A0A0A6YYJ7 113 aa6.89□□□□□ -1.31
SS18-207ENST00000577636 TMEM238LA0A1B0GVL6 79 aa6.89□□□□□ -1.31
SS18-207ENST00000577636 A6NJY4 79 aa6.89□□□□□ -1.31
SS18-207ENST00000577636 CIRBPQ14011 172 aaKnown RBP6.89□□□□□ -1.31
SS18-207ENST00000577636 IGLV5-39A0A0G2JS06 123 aa6.88□□□□□ -1.31
SS18-207ENST00000577636 SMIM1B2RUZ4 78 aa6.88□□□□□ -1.31
SS18-207ENST00000577636 MALP21145 153 aa6.88□□□□□ -1.31
SS18-207ENST00000577636 XCL1P47992 114 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 116.3 ms