RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 FAM210AQ96ND0 272 aa8.72□□□□□ -1.01
VPS53-218ENST00000575207 CSDC2Q9Y534 153 aaKnown RBP8.72□□□□□ -1.01
VPS53-218ENST00000575207 IGHV3OR16-9A0A0B4J2B5 98 aa8.71□□□□□ -1.02
VPS53-218ENST00000575207 SPINK1P00995 79 aa8.71□□□□□ -1.02
VPS53-218ENST00000575207 FHITP49789 147 aa8.71□□□□□ -1.02
VPS53-218ENST00000575207 FOXA3P55318 350 aaPredicted RBP8.71□□□□□ -1.02
VPS53-218ENST00000575207 RPS20P60866 119 aaKnown RBP8.71□□□□□ -1.02
VPS53-218ENST00000575207 LYZL1Q6UWQ5 148 aa8.71□□□□□ -1.02
VPS53-218ENST00000575207 FAM19A2Q8N3H0 131 aa8.71□□□□□ -1.02
VPS53-218ENST00000575207 LINC00469Q8N7U9 141 aa8.71□□□□□ -1.02
VPS53-218ENST00000575207 KIAA0087Q14695 138 aa8.7□□□□□ -1.02
VPS53-218ENST00000575207 TEX261Q6UWH6 196 aa8.7□□□□□ -1.02
VPS53-218ENST00000575207 C2orf82Q6UX34 121 aa8.7□□□□□ -1.02
VPS53-218ENST00000575207 RNASE7Q9H1E1 156 aaKnown RBP8.7□□□□□ -1.02
VPS53-218ENST00000575207 XAGE1AQ9HD64 81 aa8.7□□□□□ -1.02
VPS53-218ENST00000575207 UPK1BO75841 260 aa8.69□□□□□ -1.02
VPS53-218ENST00000575207 Q8NBF4 154 aa8.69□□□□□ -1.02
VPS53-218ENST00000575207 LINC00167Q96N53 147 aa8.69□□□□□ -1.02
VPS53-218ENST00000575207 ZNF727A8MUV8 499 aa8.68□□□□□ -1.02
VPS53-218ENST00000575207 TWIST1Q15672 202 aa8.68□□□□□ -1.02
VPS53-218ENST00000575207 LINC00299Q6ZSB3 139 aa8.68□□□□□ -1.02
VPS53-218ENST00000575207 TRBV6-5A0A0K0K1A5 114 aa8.67□□□□□ -1.02
VPS53-218ENST00000575207 H2BFSP57053 126 aa8.67□□□□□ -1.02
VPS53-218ENST00000575207 SMAGPQ0VAQ4 97 aa8.67□□□□□ -1.02
VPS53-218ENST00000575207 Q6ZUT4 128 aa8.67□□□□□ -1.02
VPS53-218ENST00000575207 XKRY2A2RUG3 117 aa8.65□□□□□ -1.02
VPS53-218ENST00000575207 PRLHP81277 87 aa8.65□□□□□ -1.02
VPS53-218ENST00000575207 Q8N377 158 aa8.65□□□□□ -1.02
VPS53-218ENST00000575207 PLEKHB2Q96CS7 222 aa8.65□□□□□ -1.02
VPS53-218ENST00000575207 SCO2A0A1W2PP80 73 aa8.64□□□□□ -1.03
VPS53-218ENST00000575207 GAGE10A6NGK3 116 aa8.64□□□□□ -1.03
VPS53-218ENST00000575207 SSNA1O43805 119 aa8.64□□□□□ -1.03
VPS53-218ENST00000575207 IFNA1P01562 189 aa8.64□□□□□ -1.03
VPS53-218ENST00000575207 ST20Q9HBF5 79 aa8.64□□□□□ -1.03
VPS53-218ENST00000575207 PNRC1Q12796 327 aaPredicted RBP8.63□□□□□ -1.03
VPS53-218ENST00000575207 C9orf62Q8N4C0 152 aa8.63□□□□□ -1.03
VPS53-218ENST00000575207 KRTAP9-3Q9BYQ3 159 aa8.63□□□□□ -1.03
VPS53-218ENST00000575207 RAB19A4D1S5 217 aa8.62□□□□□ -1.03
VPS53-218ENST00000575207 TRBV27A0A0K0K1C4 114 aa8.61□□□□□ -1.03
VPS53-218ENST00000575207 MAP1LC3B2A6NCE7 125 aa8.61□□□□□ -1.03
VPS53-218ENST00000575207 RPS29P62273 56 aaKnown RBP8.61□□□□□ -1.03
VPS53-218ENST00000575207 RPL32P62910 135 aaKnown RBP8.61□□□□□ -1.03
VPS53-218ENST00000575207 CNFNQ9BYD5 112 aa8.61□□□□□ -1.03
VPS53-218ENST00000575207 MAP1LC3BQ9GZQ8 125 aa8.61□□□□□ -1.03
VPS53-218ENST00000575207 SLC25A20O43772 301 aa8.6□□□□□ -1.03
VPS53-218ENST00000575207 PAGE4O60829 102 aa8.6□□□□□ -1.03
VPS53-218ENST00000575207 POLR2KP53803 58 aaKnown RBP8.6□□□□□ -1.03
VPS53-218ENST00000575207 SMIM15Q7Z3B0 74 aa8.6□□□□□ -1.03
VPS53-218ENST00000575207 MT2AP02795 61 aa8.59□□□□□ -1.03
VPS53-218ENST00000575207 FCER1GP30273 86 aa8.59□□□□□ -1.03
VPS53-218ENST00000575207 TMUB2Q71RG4 321 aa8.59□□□□□ -1.03
VPS53-218ENST00000575207 TGIF2-C20orf24A0A0A6YYL0 155 aa8.58□□□□□ -1.04
VPS53-218ENST00000575207 KMT2DO14686 5537 aa8.58□□□□□ -1.04
VPS53-218ENST00000575207 FAM19A1Q7Z5A9 133 aa8.58□□□□□ -1.04
VPS53-218ENST00000575207 TIMM21Q9BVV7 248 aa8.58□□□□□ -1.04
VPS53-218ENST00000575207 RPL35P42766 123 aaKnown RBP8.56□□□□□ -1.04
VPS53-218ENST00000575207 IGKV2-28A0A075B6P5 120 aa8.55□□□□□ -1.04
VPS53-218ENST00000575207 PFDN1O60925 122 aa8.55□□□□□ -1.04
VPS53-218ENST00000575207 IGKV2D-28P01615 120 aa8.55□□□□□ -1.04
VPS53-218ENST00000575207 AKR1C8PQ5T2L2 129 aa8.55□□□□□ -1.04
VPS53-218ENST00000575207 SPRR4Q96PI1 79 aa8.55□□□□□ -1.04
VPS53-218ENST00000575207 GNB1LQ9BYB4 327 aa8.55□□□□□ -1.04
VPS53-218ENST00000575207 IFITM3Q01628 133 aa8.54□□□□□ -1.04
VPS53-218ENST00000575207 CBLN2Q8IUK8 224 aa8.54□□□□□ -1.04
VPS53-218ENST00000575207 IFITM10A6NMD0 228 aa8.53□□□□□ -1.04
VPS53-218ENST00000575207 CKS1BP61024 79 aa8.53□□□□□ -1.04
VPS53-218ENST00000575207 MDN1Q9NU22 5596 aa8.53□□□□□ -1.04
VPS53-218ENST00000575207 VCYO14598 125 aa8.52□□□□□ -1.05
VPS53-218ENST00000575207 MT1FP04733 61 aa8.52□□□□□ -1.05
VPS53-218ENST00000575207 CENPWQ5EE01 88 aa8.52□□□□□ -1.05
VPS53-218ENST00000575207 FAM104AQ969W3 186 aa8.52□□□□□ -1.05
VPS53-218ENST00000575207 TMEM18Q96B42 140 aa8.52□□□□□ -1.05
VPS53-218ENST00000575207 IGLV5-37A0A075B6J1 123 aa8.51□□□□□ -1.05
VPS53-218ENST00000575207 NKAPP1Q8N9T2 125 aa8.51□□□□□ -1.05
VPS53-218ENST00000575207 HIGD2AQ9BW72 106 aa8.51□□□□□ -1.05
VPS53-218ENST00000575207 BATF3Q9NR55 127 aa8.51□□□□□ -1.05
VPS53-218ENST00000575207 C9orf92A6NGG3 77 aa8.5□□□□□ -1.05
VPS53-218ENST00000575207 PRSS2P07478 247 aa8.5□□□□□ -1.05
VPS53-218ENST00000575207 HBBP68871 147 aa8.5□□□□□ -1.05
VPS53-218ENST00000575207 TMEM126AQ9H061 195 aa8.5□□□□□ -1.05
VPS53-218ENST00000575207 RPL7L1Q6DKI1 246 aaKnown RBP8.49□□□□□ -1.05
VPS53-218ENST00000575207 TMEM238C9JI98 176 aa8.48□□□□□ -1.05
VPS53-218ENST00000575207 Q6Q795 121 aa8.48□□□□□ -1.05
VPS53-218ENST00000575207 ZNF706Q9Y5V0 76 aaPredicted RBP8.48□□□□□ -1.05
VPS53-218ENST00000575207 TOMM7Q9P0U1 55 aa8.47□□□□□ -1.05
VPS53-218ENST00000575207 BORCS7-ASMTA0A0B4J1R7 106 aa8.46□□□□□ -1.06
VPS53-218ENST00000575207 RPL39P62891 51 aaKnown RBP8.46□□□□□ -1.06
VPS53-218ENST00000575207 MRPS36P82909 103 aaKnown RBP8.46□□□□□ -1.06
VPS53-218ENST00000575207 C6orf226Q5I0X4 101 aa8.46□□□□□ -1.06
VPS53-218ENST00000575207 SMIM12Q96EX1 92 aa8.46□□□□□ -1.06
VPS53-218ENST00000575207 SCO1O75880 301 aa8.45□□□□□ -1.06
VPS53-218ENST00000575207 LINC01561Q8N1V8 128 aa8.45□□□□□ -1.06
VPS53-218ENST00000575207 GEMIN7Q9H840 131 aaKnown RBP8.45□□□□□ -1.06
VPS53-218ENST00000575207 SPANXA1Q9NS26 97 aa8.45□□□□□ -1.06
VPS53-218ENST00000575207 KRTAP2-3P0C7H8 128 aa8.44□□□□□ -1.06
VPS53-218ENST00000575207 GNG4P50150 75 aa8.44□□□□□ -1.06
VPS53-218ENST00000575207 NUDT10Q8NFP7 164 aa8.44□□□□□ -1.06
VPS53-218ENST00000575207 NUDT11Q96G61 164 aa8.44□□□□□ -1.06
VPS53-218ENST00000575207 KRTAP2-4Q9BYR9 128 aa8.44□□□□□ -1.06
VPS53-218ENST00000575207 F8VRH5 84 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms