RNA–Protein interactions for RNA: ENST00000573852.5

SCARF1-206, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 2,698 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-206ENST00000573852 JMJD1CQ15652 2540 aa13.51□□□□□ -0.25
SCARF1-206ENST00000573852 HERV-K104P63124 156 aa13.51□□□□□ -0.25
SCARF1-206ENST00000573852 LOC100131303A0A0U1RQF7 123 aa13.5□□□□□ -0.25
SCARF1-206ENST00000573852 GAGE7O76087 117 aa13.5□□□□□ -0.25
SCARF1-206ENST00000573852 GAGE12FP0CL80 117 aa13.5□□□□□ -0.25
SCARF1-206ENST00000573852 GAGE12GP0CL81 117 aa13.5□□□□□ -0.25
SCARF1-206ENST00000573852 GAGE12IP0CL82 117 aa13.5□□□□□ -0.25
SCARF1-206ENST00000573852 TMEM243Q9BU79 118 aa13.5□□□□□ -0.25
SCARF1-206ENST00000573852 NBPF19A0A087WUL8 3843 aa13.5□□□□□ -0.25
SCARF1-206ENST00000573852 CCL24O00175 119 aa13.5□□□□□ -0.25
SCARF1-206ENST00000573852 GIG44P09565 113 aaPredicted RBP13.5□□□□□ -0.25
SCARF1-206ENST00000573852 UBE2L6O14933 153 aa13.49□□□□□ -0.25
SCARF1-206ENST00000573852 FAM218AQ96MZ4 157 aa13.49□□□□□ -0.25
SCARF1-206ENST00000573852 UBR5O95071 2799 aaPredicted RBP13.49□□□□□ -0.25
SCARF1-206ENST00000573852 SMIM20Q8N5G0 67 aa13.49□□□□□ -0.25
SCARF1-206ENST00000573852 PLAC8L1A1L4L8 177 aa13.48□□□□□ -0.25
SCARF1-206ENST00000573852 TRACP01848 142 aa13.47□□□□□ -0.25
SCARF1-206ENST00000573852 C22orf24Q9Y442 160 aa13.47□□□□□ -0.25
SCARF1-206ENST00000573852 SETD2Q9BYW2 2564 aaPredicted RBP13.47□□□□□ -0.25
SCARF1-206ENST00000573852 WFDC10AQ9H1F0 79 aa13.47□□□□□ -0.25
SCARF1-206ENST00000573852 BAALC-AS2P0C853 105 aa13.46□□□□□ -0.25
SCARF1-206ENST00000573852 DNAJC9-AS1A6NH13 148 aa13.46□□□□□ -0.26
SCARF1-206ENST00000573852 TRGV2A0A075B6R0 118 aa13.45□□□□□ -0.26
SCARF1-206ENST00000573852 TRBV7-7A0A0K0K1E9 115 aa13.45□□□□□ -0.26
SCARF1-206ENST00000573852 PLA2G2AP14555 144 aa13.45□□□□□ -0.26
SCARF1-206ENST00000573852 KRTAP1-3Q8IUG1 177 aa13.45□□□□□ -0.26
SCARF1-206ENST00000573852 TMEM86BQ8N661 226 aa13.45□□□□□ -0.26
SCARF1-206ENST00000573852 ITPR3Q14573 2671 aa13.45□□□□□ -0.26
SCARF1-206ENST00000573852 APCP25054 2843 aa13.44□□□□□ -0.26
SCARF1-206ENST00000573852 IGKV3OR2-268A0A0C4DH90 116 aa13.44□□□□□ -0.26
SCARF1-206ENST00000573852 MIR7-3HGQ8N6C7 128 aa13.44□□□□□ -0.26
SCARF1-206ENST00000573852 COX7B2Q8TF08 81 aa13.44□□□□□ -0.26
SCARF1-206ENST00000573852 HIST2H2BCQ6DN03 193 aa13.44□□□□□ -0.26
SCARF1-206ENST00000573852 SMCR5Q8TEV8 140 aa13.44□□□□□ -0.26
SCARF1-206ENST00000573852 PPDPFQ9H3Y8 114 aa13.44□□□□□ -0.26
SCARF1-206ENST00000573852 ACYP1P07311 99 aa13.43□□□□□ -0.26
SCARF1-206ENST00000573852 LRRC75A-AS1Q8N1F1 130 aa13.43□□□□□ -0.26
SCARF1-206ENST00000573852 TOMM7Q9P0U1 55 aa13.43□□□□□ -0.26
SCARF1-206ENST00000573852 LINC00337Q8N6G1 96 aa13.43□□□□□ -0.26
SCARF1-206ENST00000573852 USP24Q9UPU5 2620 aa13.43□□□□□ -0.26
SCARF1-206ENST00000573852 IGKV2-28A0A075B6P5 120 aa13.42□□□□□ -0.26
SCARF1-206ENST00000573852 IGKV2D-28P01615 120 aa13.42□□□□□ -0.26
SCARF1-206ENST00000573852 RPL35AP18077 110 aaKnown RBP13.42□□□□□ -0.26
SCARF1-206ENST00000573852 C16orf74Q96GX8 76 aa13.42□□□□□ -0.26
SCARF1-206ENST00000573852 BBC3Q96PG8 261 aaPredicted RBP13.42□□□□□ -0.26
SCARF1-206ENST00000573852 ESM1Q9NQ30 184 aa13.42□□□□□ -0.26
SCARF1-206ENST00000573852 IGLV4-60A0A075B6I1 120 aa13.42□□□□□ -0.26
SCARF1-206ENST00000573852 C3orf56Q8N813 242 aa13.42□□□□□ -0.26
SCARF1-206ENST00000573852 CHCHD5Q9BSY4 110 aa13.42□□□□□ -0.26
SCARF1-206ENST00000573852 TRAV13-2A0A0B4J235 113 aa13.41□□□□□ -0.26
SCARF1-206ENST00000573852 TRBV6-4A0A1B0GX49 114 aa13.41□□□□□ -0.26
SCARF1-206ENST00000573852 Q9HAA7 133 aa13.41□□□□□ -0.26
SCARF1-206ENST00000573852 RPL28P46779 137 aaKnown RBP13.41□□□□□ -0.26
SCARF1-206ENST00000573852 CRPP02741 224 aa13.4□□□□□ -0.26
SCARF1-206ENST00000573852 SND1-IT1Q9HBX3 110 aa13.4□□□□□ -0.26
SCARF1-206ENST00000573852 TRGV4A0A0C4DH28 118 aa13.39□□□□□ -0.27
SCARF1-206ENST00000573852 PF4P02776 101 aa13.39□□□□□ -0.27
SCARF1-206ENST00000573852 FAM222AQ5U5X8 452 aa13.39□□□□□ -0.27
SCARF1-206ENST00000573852 CFAP161Q6P656 301 aa13.39□□□□□ -0.27
SCARF1-206ENST00000573852 FAM110AQ9BQ89 295 aa13.39□□□□□ -0.27
SCARF1-206ENST00000573852 LINC00158P58513 81 aa13.38□□□□□ -0.27
SCARF1-206ENST00000573852 CSNK1G2-AS1Q8NCQ2 148 aa13.38□□□□□ -0.27
SCARF1-206ENST00000573852 OVOL2Q9BRP0 275 aa13.38□□□□□ -0.27
SCARF1-206ENST00000573852 C19orf73Q9NVV2 129 aa13.38□□□□□ -0.27
SCARF1-206ENST00000573852 CCDC168Q8NDH2 2452 aa13.38□□□□□ -0.27
SCARF1-206ENST00000573852 IGHV3OR16-9A0A0B4J2B5 98 aa13.37□□□□□ -0.27
SCARF1-206ENST00000573852 TRBV6-8A0A0A6YYG3 113 aa13.37□□□□□ -0.27
SCARF1-206ENST00000573852 FHL2Q14192 279 aa13.36□□□□□ -0.27
SCARF1-206ENST00000573852 CCL18P55774 89 aa13.36□□□□□ -0.27
SCARF1-206ENST00000573852 SMIM11BQ8TCY0 68 aa13.36□□□□□ -0.27
SCARF1-206ENST00000573852 MALP21145 153 aa13.36□□□□□ -0.27
SCARF1-206ENST00000573852 FLNAP21333 2647 aaKnown RBP13.35□□□□□ -0.27
SCARF1-206ENST00000573852 SDIM1Q6ZPB5 146 aa13.35□□□□□ -0.27
SCARF1-206ENST00000573852 LINC00643Q86TS7 51 aa13.35□□□□□ -0.27
SCARF1-206ENST00000573852 C5orf38Q86SI9 138 aa13.35□□□□□ -0.27
SCARF1-206ENST00000573852 WFDC11Q8NEX6 87 aa13.35□□□□□ -0.27
SCARF1-206ENST00000573852 IMUPQ9GZP8 106 aa13.35□□□□□ -0.27
SCARF1-206ENST00000573852 A0A087WYN8 130 aa13.34□□□□□ -0.27
SCARF1-206ENST00000573852 FAM236AA0A1B0GUQ0 79 aa13.34□□□□□ -0.27
SCARF1-206ENST00000573852 FAM236BA0A1B0GV22 79 aa13.34□□□□□ -0.27
SCARF1-206ENST00000573852 CMC4P56277 68 aaPredicted RBP13.34□□□□□ -0.27
SCARF1-206ENST00000573852 A0A087WZ39 114 aa13.33□□□□□ -0.28
SCARF1-206ENST00000573852 IGLV1-51P01701 117 aa13.33□□□□□ -0.28
SCARF1-206ENST00000573852 PFN2P35080 140 aa13.33□□□□□ -0.28
SCARF1-206ENST00000573852 LINC01006Q8NI28 216 aa13.32□□□□□ -0.28
SCARF1-206ENST00000573852 GAGE2AQ6NT46 116 aa13.32□□□□□ -0.28
SCARF1-206ENST00000573852 ZNF843Q8N446 348 aa13.32□□□□□ -0.28
SCARF1-206ENST00000573852 IBA57-AS1B1ANH7 110 aa13.31□□□□□ -0.28
SCARF1-206ENST00000573852 INAFM2P0DMQ5 153 aa13.31□□□□□ -0.28
SCARF1-206ENST00000573852 C9orf129Q5T035 196 aaKnown RBP13.31□□□□□ -0.28
SCARF1-206ENST00000573852 ATP5G1P05496 136 aa13.29□□□□□ -0.28
SCARF1-206ENST00000573852 LINC00959A0A1B0GUT2 108 aa13.28□□□□□ -0.28
SCARF1-206ENST00000573852 C11orf68Q9H3H3 251 aaKnown RBP13.28□□□□□ -0.28
SCARF1-206ENST00000573852 DNAL4O96015 105 aa13.28□□□□□ -0.28
SCARF1-206ENST00000573852 PAX4O43316 350 aa13.27□□□□□ -0.29
SCARF1-206ENST00000573852 DEFB130BP0DP73 79 aa13.27□□□□□ -0.29
SCARF1-206ENST00000573852 DEFB130AP0DP74 79 aa13.27□□□□□ -0.29
SCARF1-206ENST00000573852 H0YGX0 51 aa13.26□□□□□ -0.29
SCARF1-206ENST00000573852 C6orf226Q5I0X4 101 aa13.25□□□□□ -0.29
SCARF1-206ENST00000573852 ACANP16112 2415 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms