RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 NF1P21359 2839 aa11.09□□□□□ -0.63
NUP88-207ENST00000573584 TRACP01848 142 aa11.08□□□□□ -0.63
NUP88-207ENST00000573584 TRGV2A0A075B6R0 118 aa11.08□□□□□ -0.64
NUP88-207ENST00000573584 ACYP1P07311 99 aa11.08□□□□□ -0.64
NUP88-207ENST00000573584 BAALC-AS2P0C853 105 aa11.08□□□□□ -0.64
NUP88-207ENST00000573584 NIPBLQ6KC79 2804 aaeCLIP11.08□□□□□ -0.64
NUP88-207ENST00000573584 LOC100131303A0A0U1RQF7 123 aa11.07□□□□□ -0.64
NUP88-207ENST00000573584 ZFYVE26Q68DK2 2539 aa11.07□□□□□ -0.64
NUP88-207ENST00000573584 HIST2H2BCQ6DN03 193 aa11.07□□□□□ -0.64
NUP88-207ENST00000573584 FAM218AQ96MZ4 157 aa11.07□□□□□ -0.64
NUP88-207ENST00000573584 ZNF469Q96JG9 3925 aaPredicted RBP11.06□□□□□ -0.64
NUP88-207ENST00000573584 TRBV7-7A0A0K0K1E9 115 aa11.06□□□□□ -0.64
NUP88-207ENST00000573584 GIG44P09565 113 aaPredicted RBP11.06□□□□□ -0.64
NUP88-207ENST00000573584 TMEM86BQ8N661 226 aa11.06□□□□□ -0.64
NUP88-207ENST00000573584 TOMM7Q9P0U1 55 aa11.06□□□□□ -0.64
NUP88-207ENST00000573584 TRAV13-2A0A0B4J235 113 aa11.05□□□□□ -0.64
NUP88-207ENST00000573584 IGKV3OR2-268A0A0C4DH90 116 aa11.05□□□□□ -0.64
NUP88-207ENST00000573584 COX7B2Q8TF08 81 aa11.05□□□□□ -0.64
NUP88-207ENST00000573584 PPDPFQ9H3Y8 114 aa11.05□□□□□ -0.64
NUP88-207ENST00000573584 MIR7-3HGQ8N6C7 128 aa11.05□□□□□ -0.64
NUP88-207ENST00000573584 SONP18583 2426 aaKnown RBP11.05□□□□□ -0.64
NUP88-207ENST00000573584 PLAC8L1A1L4L8 177 aa11.05□□□□□ -0.64
NUP88-207ENST00000573584 DNAJC9-AS1A6NH13 148 aa11.04□□□□□ -0.64
NUP88-207ENST00000573584 PF4P02776 101 aa11.04□□□□□ -0.64
NUP88-207ENST00000573584 C16orf74Q96GX8 76 aa11.04□□□□□ -0.64
NUP88-207ENST00000573584 CRPP02741 224 aa11.04□□□□□ -0.64
NUP88-207ENST00000573584 LRRC75A-AS1Q8N1F1 130 aa11.04□□□□□ -0.64
NUP88-207ENST00000573584 CHCHD5Q9BSY4 110 aa11.04□□□□□ -0.64
NUP88-207ENST00000573584 TRBV6-4A0A1B0GX49 114 aa11.03□□□□□ -0.64
NUP88-207ENST00000573584 WFDC10AQ9H1F0 79 aa11.03□□□□□ -0.64
NUP88-207ENST00000573584 TRGV4A0A0C4DH28 118 aa11.03□□□□□ -0.64
NUP88-207ENST00000573584 RPL35AP18077 110 aaKnown RBP11.03□□□□□ -0.64
NUP88-207ENST00000573584 RPL28P46779 137 aaKnown RBP11.03□□□□□ -0.64
NUP88-207ENST00000573584 SND1-IT1Q9HBX3 110 aa11.03□□□□□ -0.64
NUP88-207ENST00000573584 JMJD1CQ15652 2540 aa11.03□□□□□ -0.64
NUP88-207ENST00000573584 NBPF19A0A087WUL8 3843 aa11.03□□□□□ -0.64
NUP88-207ENST00000573584 LINC00337Q8N6G1 96 aa11.02□□□□□ -0.64
NUP88-207ENST00000573584 Q9HAA7 133 aa11.02□□□□□ -0.64
NUP88-207ENST00000573584 C22orf24Q9Y442 160 aa11.02□□□□□ -0.64
NUP88-207ENST00000573584 SETXQ7Z333 2677 aaKnown RBP11.02□□□□□ -0.65
NUP88-207ENST00000573584 UBR5O95071 2799 aaPredicted RBP11.02□□□□□ -0.65
NUP88-207ENST00000573584 LINC00158P58513 81 aa11.02□□□□□ -0.65
NUP88-207ENST00000573584 FAM222AQ5U5X8 452 aa11.02□□□□□ -0.65
NUP88-207ENST00000573584 SMCR5Q8TEV8 140 aa11.02□□□□□ -0.65
NUP88-207ENST00000573584 IGLV4-60A0A075B6I1 120 aa11.01□□□□□ -0.65
NUP88-207ENST00000573584 IGKV2-28A0A075B6P5 120 aa11.01□□□□□ -0.65
NUP88-207ENST00000573584 IGKV2D-28P01615 120 aa11.01□□□□□ -0.65
NUP88-207ENST00000573584 PLA2G2AP14555 144 aa11.01□□□□□ -0.65
NUP88-207ENST00000573584 SETD2Q9BYW2 2564 aaPredicted RBP11.01□□□□□ -0.65
NUP88-207ENST00000573584 CMC4P56277 68 aaPredicted RBP11□□□□□ -0.65
NUP88-207ENST00000573584 IMUPQ9GZP8 106 aa11□□□□□ -0.65
NUP88-207ENST00000573584 LINC00643Q86TS7 51 aa11□□□□□ -0.65
NUP88-207ENST00000573584 KRTAP1-3Q8IUG1 177 aa11□□□□□ -0.65
NUP88-207ENST00000573584 ESM1Q9NQ30 184 aa10.99□□□□□ -0.65
NUP88-207ENST00000573584 TRBV6-8A0A0A6YYG3 113 aa10.99□□□□□ -0.65
NUP88-207ENST00000573584 IGHV3OR16-9A0A0B4J2B5 98 aa10.99□□□□□ -0.65
NUP88-207ENST00000573584 MALP21145 153 aa10.99□□□□□ -0.65
NUP88-207ENST00000573584 OVOL2Q9BRP0 275 aa10.99□□□□□ -0.65
NUP88-207ENST00000573584 FAM236AA0A1B0GUQ0 79 aa10.98□□□□□ -0.65
NUP88-207ENST00000573584 FAM236BA0A1B0GV22 79 aa10.98□□□□□ -0.65
NUP88-207ENST00000573584 INAFM2P0DMQ5 153 aa10.98□□□□□ -0.65
NUP88-207ENST00000573584 APCP25054 2843 aa10.98□□□□□ -0.65
NUP88-207ENST00000573584 CCL18P55774 89 aa10.98□□□□□ -0.65
NUP88-207ENST00000573584 SMIM11BQ8TCY0 68 aa10.98□□□□□ -0.65
NUP88-207ENST00000573584 BBC3Q96PG8 261 aaPredicted RBP10.98□□□□□ -0.65
NUP88-207ENST00000573584 CSNK1G2-AS1Q8NCQ2 148 aa10.97□□□□□ -0.65
NUP88-207ENST00000573584 PFN2P35080 140 aa10.97□□□□□ -0.65
NUP88-207ENST00000573584 FHL2Q14192 279 aa10.97□□□□□ -0.65
NUP88-207ENST00000573584 GAGE2AQ6NT46 116 aa10.97□□□□□ -0.65
NUP88-207ENST00000573584 C5orf38Q86SI9 138 aa10.97□□□□□ -0.65
NUP88-207ENST00000573584 ITPR3Q14573 2671 aa10.97□□□□□ -0.65
NUP88-207ENST00000573584 DNAL4O96015 105 aa10.96□□□□□ -0.65
NUP88-207ENST00000573584 C19orf73Q9NVV2 129 aa10.96□□□□□ -0.65
NUP88-207ENST00000573584 SDIM1Q6ZPB5 146 aa10.96□□□□□ -0.66
NUP88-207ENST00000573584 A0A087WYN8 130 aa10.95□□□□□ -0.66
NUP88-207ENST00000573584 A0A087WZ39 114 aa10.95□□□□□ -0.66
NUP88-207ENST00000573584 IBA57-AS1B1ANH7 110 aa10.95□□□□□ -0.66
NUP88-207ENST00000573584 WFDC11Q8NEX6 87 aa10.95□□□□□ -0.66
NUP88-207ENST00000573584 IGLV1-51P01701 117 aa10.94□□□□□ -0.66
NUP88-207ENST00000573584 CCDC168Q8NDH2 2452 aa10.94□□□□□ -0.66
NUP88-207ENST00000573584 LINC01006Q8NI28 216 aa10.94□□□□□ -0.66
NUP88-207ENST00000573584 FAM110AQ9BQ89 295 aa10.94□□□□□ -0.66
NUP88-207ENST00000573584 USP24Q9UPU5 2620 aa10.93□□□□□ -0.66
NUP88-207ENST00000573584 H0YGX0 51 aa10.93□□□□□ -0.66
NUP88-207ENST00000573584 PAX4O43316 350 aa10.93□□□□□ -0.66
NUP88-207ENST00000573584 SVIPQ8NHG7 77 aa10.93□□□□□ -0.66
NUP88-207ENST00000573584 ATP5G1P05496 136 aa10.92□□□□□ -0.66
NUP88-207ENST00000573584 LINC00959A0A1B0GUT2 108 aa10.92□□□□□ -0.66
NUP88-207ENST00000573584 ZNF843Q8N446 348 aa10.92□□□□□ -0.66
NUP88-207ENST00000573584 DEFB130BP0DP73 79 aa10.91□□□□□ -0.66
NUP88-207ENST00000573584 DEFB130AP0DP74 79 aa10.91□□□□□ -0.66
NUP88-207ENST00000573584 C6orf226Q5I0X4 101 aa10.91□□□□□ -0.66
NUP88-207ENST00000573584 OR13C6PQ8NH95 151 aa10.91□□□□□ -0.66
NUP88-207ENST00000573584 C11orf68Q9H3H3 251 aaKnown RBP10.91□□□□□ -0.66
NUP88-207ENST00000573584 C9orf129Q5T035 196 aaKnown RBP10.91□□□□□ -0.66
NUP88-207ENST00000573584 LECT2O14960 151 aa10.9□□□□□ -0.66
NUP88-207ENST00000573584 FLNAP21333 2647 aaKnown RBP10.9□□□□□ -0.66
NUP88-207ENST00000573584 C3orf56Q8N813 242 aa10.89□□□□□ -0.67
NUP88-207ENST00000573584 C14orf132Q9NPU4 83 aa10.89□□□□□ -0.67
NUP88-207ENST00000573584 CXCL5P42830 114 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms