RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 COX7A2LO14548 114 aa12.17□□□□□ -0.46
VPS53-215ENST00000573028 ZNF469Q96JG9 3925 aaPredicted RBP12.17□□□□□ -0.46
VPS53-215ENST00000573028 CCL24O00175 119 aa12.16□□□□□ -0.46
VPS53-215ENST00000573028 DAZ2Q13117 558 aaKnown RBP12.16□□□□□ -0.46
VPS53-215ENST00000573028 DAZ4Q86SG3 579 aaKnown RBP12.16□□□□□ -0.46
VPS53-215ENST00000573028 TMEM243Q9BU79 118 aa12.16□□□□□ -0.46
VPS53-215ENST00000573028 DAZ3Q9NR90 486 aaKnown RBP12.16□□□□□ -0.46
VPS53-215ENST00000573028 DEFB113Q30KQ7 82 aa12.15□□□□□ -0.46
VPS53-215ENST00000573028 Q9HAA7 133 aa12.15□□□□□ -0.46
VPS53-215ENST00000573028 LINC01600Q96MT4 127 aa12.15□□□□□ -0.47
VPS53-215ENST00000573028 APCP25054 2843 aa12.14□□□□□ -0.47
VPS53-215ENST00000573028 TRBV10-1A0A0K0K1A3 114 aa12.14□□□□□ -0.47
VPS53-215ENST00000573028 F5H768 121 aa12.14□□□□□ -0.47
VPS53-215ENST00000573028 BAALC-AS2P0C853 105 aa12.13□□□□□ -0.47
VPS53-215ENST00000573028 AKAP9Q99996 3911 aa12.13□□□□□ -0.47
VPS53-215ENST00000573028 TRGV4A0A0C4DH28 118 aa12.13□□□□□ -0.47
VPS53-215ENST00000573028 MIR7-3HGQ8N6C7 128 aa12.13□□□□□ -0.47
VPS53-215ENST00000573028 C11orf68Q9H3H3 251 aaKnown RBP12.13□□□□□ -0.47
VPS53-215ENST00000573028 COPS9Q8WXC6 57 aa12.13□□□□□ -0.47
VPS53-215ENST00000573028 FAM218AQ96MZ4 157 aa12.13□□□□□ -0.47
VPS53-215ENST00000573028 LINC00158P58513 81 aa12.12□□□□□ -0.47
VPS53-215ENST00000573028 CHCHD5Q9BSY4 110 aa12.12□□□□□ -0.47
VPS53-215ENST00000573028 DNAJC9-AS1A6NH13 148 aa12.12□□□□□ -0.47
VPS53-215ENST00000573028 C3orf56Q8N813 242 aa12.11□□□□□ -0.47
VPS53-215ENST00000573028 SHISA2Q6UWI4 295 aa12.11□□□□□ -0.47
VPS53-215ENST00000573028 BBC3Q96PG8 261 aaPredicted RBP12.11□□□□□ -0.47
VPS53-215ENST00000573028 PFN2P35080 140 aa12.11□□□□□ -0.47
VPS53-215ENST00000573028 IL17DQ8TAD2 202 aa12.11□□□□□ -0.47
VPS53-215ENST00000573028 CSDC2Q9Y534 153 aaKnown RBP12.11□□□□□ -0.47
VPS53-215ENST00000573028 NBEAL2Q6ZNJ1 2754 aa12.1□□□□□ -0.47
VPS53-215ENST00000573028 CRPP02741 224 aa12.1□□□□□ -0.47
VPS53-215ENST00000573028 Q6Q795 121 aa12.1□□□□□ -0.47
VPS53-215ENST00000573028 C5orf38Q86SI9 138 aa12.1□□□□□ -0.47
VPS53-215ENST00000573028 HERV-K104P63124 156 aa12.09□□□□□ -0.47
VPS53-215ENST00000573028 COX7B2Q8TF08 81 aa12.09□□□□□ -0.47
VPS53-215ENST00000573028 IGLV4-60A0A075B6I1 120 aa12.09□□□□□ -0.47
VPS53-215ENST00000573028 SND1-IT1Q9HBX3 110 aa12.09□□□□□ -0.47
VPS53-215ENST00000573028 GCN1Q92616 2671 aaKnown RBP12.08□□□□□ -0.48
VPS53-215ENST00000573028 TRAV25A0A0B4J276 109 aa12.08□□□□□ -0.48
VPS53-215ENST00000573028 FAM240AA0A1B0GVK7 77 aa12.08□□□□□ -0.48
VPS53-215ENST00000573028 WFDC11Q8NEX6 87 aa12.07□□□□□ -0.48
VPS53-215ENST00000573028 ESM1Q9NQ30 184 aa12.07□□□□□ -0.48
VPS53-215ENST00000573028 GIG44P09565 113 aaPredicted RBP12.07□□□□□ -0.48
VPS53-215ENST00000573028 DEFB121Q5J5C9 76 aa12.07□□□□□ -0.48
VPS53-215ENST00000573028 LINC00337Q8N6G1 96 aa12.07□□□□□ -0.48
VPS53-215ENST00000573028 DEFB130BP0DP73 79 aa12.07□□□□□ -0.48
VPS53-215ENST00000573028 DEFB130AP0DP74 79 aa12.07□□□□□ -0.48
VPS53-215ENST00000573028 GAGE2AQ6NT46 116 aa12.07□□□□□ -0.48
VPS53-215ENST00000573028 HIST2H2BCQ6DN03 193 aa12.06□□□□□ -0.48
VPS53-215ENST00000573028 UBR5O95071 2799 aaPredicted RBP12.06□□□□□ -0.48
VPS53-215ENST00000573028 FAM236AA0A1B0GUQ0 79 aa12.05□□□□□ -0.48
VPS53-215ENST00000573028 FAM236BA0A1B0GV22 79 aa12.05□□□□□ -0.48
VPS53-215ENST00000573028 OR13C6PQ8NH95 151 aa12.05□□□□□ -0.48
VPS53-215ENST00000573028 SMCR5Q8TEV8 140 aa12.05□□□□□ -0.48
VPS53-215ENST00000573028 ATP5G1P05496 136 aa12.05□□□□□ -0.48
VPS53-215ENST00000573028 FAM19A3Q7Z5A8 133 aa12.05□□□□□ -0.48
VPS53-215ENST00000573028 TRACP01848 142 aa12.04□□□□□ -0.48
VPS53-215ENST00000573028 C16orf74Q96GX8 76 aa12.04□□□□□ -0.48
VPS53-215ENST00000573028 TRAV13-2A0A0B4J235 113 aa12.04□□□□□ -0.48
VPS53-215ENST00000573028 PLAC8L1A1L4L8 177 aa12.04□□□□□ -0.48
VPS53-215ENST00000573028 MRPL23Q16540 153 aaKnown RBP12.04□□□□□ -0.48
VPS53-215ENST00000573028 CLPSL2Q6UWE3 100 aa12.04□□□□□ -0.48
VPS53-215ENST00000573028 DNAL4O96015 105 aa12.03□□□□□ -0.48
VPS53-215ENST00000573028 PAX4O43316 350 aa12.03□□□□□ -0.48
VPS53-215ENST00000573028 IGKV2-28A0A075B6P5 120 aa12.03□□□□□ -0.48
VPS53-215ENST00000573028 IGKV2D-28P01615 120 aa12.03□□□□□ -0.48
VPS53-215ENST00000573028 A0A096LPF7 62 aa12.02□□□□□ -0.48
VPS53-215ENST00000573028 SMIM11BQ8TCY0 68 aa12.02□□□□□ -0.49
VPS53-215ENST00000573028 A0A087WYN8 130 aa12.01□□□□□ -0.49
VPS53-215ENST00000573028 TRBV6-8A0A0A6YYG3 113 aa12.01□□□□□ -0.49
VPS53-215ENST00000573028 CCL18P55774 89 aa12.01□□□□□ -0.49
VPS53-215ENST00000573028 NBPF19A0A087WUL8 3843 aa12.01□□□□□ -0.49
VPS53-215ENST00000573028 HIVEP2P31629 2446 aa12.01□□□□□ -0.49
VPS53-215ENST00000573028 XCL1P47992 114 aa12.01□□□□□ -0.49
VPS53-215ENST00000573028 TRBV6-4A0A1B0GX49 114 aa12□□□□□ -0.49
VPS53-215ENST00000573028 ACYP1P07311 99 aa12□□□□□ -0.49
VPS53-215ENST00000573028 MALP21145 153 aa12□□□□□ -0.49
VPS53-215ENST00000573028 C22orf24Q9Y442 160 aa12□□□□□ -0.49
VPS53-215ENST00000573028 C6orf226Q5I0X4 101 aa11.99□□□□□ -0.49
VPS53-215ENST00000573028 KRTAP1-3Q8IUG1 177 aa11.99□□□□□ -0.49
VPS53-215ENST00000573028 TRBV7-7A0A0K0K1E9 115 aa11.99□□□□□ -0.49
VPS53-215ENST00000573028 LINC01006Q8NI28 216 aa11.99□□□□□ -0.49
VPS53-215ENST00000573028 RPL28P46779 137 aaKnown RBP11.99□□□□□ -0.49
VPS53-215ENST00000573028 IGHV3OR16-9A0A0B4J2B5 98 aa11.98□□□□□ -0.49
VPS53-215ENST00000573028 FHL2Q14192 279 aa11.98□□□□□ -0.49
VPS53-215ENST00000573028 SLPIP03973 132 aa11.98□□□□□ -0.49
VPS53-215ENST00000573028 C9orf129Q5T035 196 aaKnown RBP11.98□□□□□ -0.49
VPS53-215ENST00000573028 ZNF843Q8N446 348 aa11.98□□□□□ -0.49
VPS53-215ENST00000573028 TMEM86BQ8N661 226 aa11.98□□□□□ -0.49
VPS53-215ENST00000573028 C14orf132Q9NPU4 83 aa11.98□□□□□ -0.49
VPS53-215ENST00000573028 LECT2O14960 151 aa11.97□□□□□ -0.49
VPS53-215ENST00000573028 LINC00643Q86TS7 51 aa11.97□□□□□ -0.49
VPS53-215ENST00000573028 PF4P02776 101 aa11.96□□□□□ -0.49
VPS53-215ENST00000573028 INAFM2P0DMQ5 153 aa11.96□□□□□ -0.49
VPS53-215ENST00000573028 LRRC75A-AS1Q8N1F1 130 aa11.96□□□□□ -0.49
VPS53-215ENST00000573028 SMIM20Q8N5G0 67 aa11.96□□□□□ -0.49
VPS53-215ENST00000573028 GYPEP15421 78 aa11.95□□□□□ -0.5
VPS53-215ENST00000573028 FAM222AQ5U5X8 452 aa11.94□□□□□ -0.5
VPS53-215ENST00000573028 C19orf73Q9NVV2 129 aa11.94□□□□□ -0.5
VPS53-215ENST00000573028 CSNK1G2-AS1Q8NCQ2 148 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms