RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 TMEM262E9PQX1 116 aa7.02□□□□□ -1.29
VPS53-206ENST00000570359 FAM222AQ5U5X8 452 aa7.02□□□□□ -1.29
VPS53-206ENST00000570359 PTH2Q96A98 100 aa7.02□□□□□ -1.29
VPS53-206ENST00000570359 CFC1BP0CG36 223 aa7.02□□□□□ -1.29
VPS53-206ENST00000570359 CFC1P0CG37 223 aa7.02□□□□□ -1.29
VPS53-206ENST00000570359 GYPEP15421 78 aa7.02□□□□□ -1.29
VPS53-206ENST00000570359 FHL2Q14192 279 aa7.02□□□□□ -1.29
VPS53-206ENST00000570359 ADAMTSL4-AS1Q5T5F5 129 aa7.02□□□□□ -1.29
VPS53-206ENST00000570359 C9orf66Q5T8R8 295 aa7.02□□□□□ -1.29
VPS53-206ENST00000570359 DAZ4Q86SG3 579 aaKnown RBP7.02□□□□□ -1.29
VPS53-206ENST00000570359 DAZ3Q9NR90 486 aaKnown RBP7.02□□□□□ -1.29
VPS53-206ENST00000570359 IGHV1-58A0A0C4DH39 117 aa7.01□□□□□ -1.29
VPS53-206ENST00000570359 TINCRA0A1B0GVN0 87 aa7.01□□□□□ -1.29
VPS53-206ENST00000570359 MT-ATP8P03928 68 aa7.01□□□□□ -1.29
VPS53-206ENST00000570359 SCGB1C2P0DMR2 95 aa7.01□□□□□ -1.29
VPS53-206ENST00000570359 IGLV4-60A0A075B6I1 120 aa7.01□□□□□ -1.29
VPS53-206ENST00000570359 LINC00242Q5T6M2 205 aa7.01□□□□□ -1.29
VPS53-206ENST00000570359 TMEM101Q96IK0 257 aa7.01□□□□□ -1.29
VPS53-206ENST00000570359 VSIG2Q96IQ7 327 aa7.01□□□□□ -1.29
VPS53-206ENST00000570359 ANAPC13Q9BS18 74 aa7.01□□□□□ -1.29
VPS53-206ENST00000570359 FBN1P35555 2871 aaKnown RBP7□□□□□ -1.29
VPS53-206ENST00000570359 TRBV10-1A0A0K0K1A3 114 aa7□□□□□ -1.29
VPS53-206ENST00000570359 XGP55808 180 aa7□□□□□ -1.29
VPS53-206ENST00000570359 OXLD1Q5BKU9 147 aa7□□□□□ -1.29
VPS53-206ENST00000570359 COL6A5A8TX70 2615 aa7□□□□□ -1.29
VPS53-206ENST00000570359 EIF4EBP3O60516 100 aaPredicted RBP7□□□□□ -1.29
VPS53-206ENST00000570359 PPDPFLQ8WWR9 84 aa7□□□□□ -1.29
VPS53-206ENST00000570359 Q9H8V8 135 aa7□□□□□ -1.29
VPS53-206ENST00000570359 SS18L2Q9UHA2 77 aa7□□□□□ -1.29
VPS53-206ENST00000570359 X6R8D5 127 aa7□□□□□ -1.29
VPS53-206ENST00000570359 ZFAND6Q6FIF0 208 aa6.99□□□□□ -1.29
VPS53-206ENST00000570359 SMCPP49901 116 aaPredicted RBP6.98□□□□□ -1.29
VPS53-206ENST00000570359 MEIG1Q5JSS6 88 aa6.98□□□□□ -1.29
VPS53-206ENST00000570359 Q8N3U1 123 aa6.98□□□□□ -1.29
VPS53-206ENST00000570359 CDC42SE2Q9NRR3 84 aa6.98□□□□□ -1.29
VPS53-206ENST00000570359 IGHV4-28A0A0C4DH34 117 aa6.98□□□□□ -1.29
VPS53-206ENST00000570359 LYRM7Q5U5X0 104 aa6.98□□□□□ -1.29
VPS53-206ENST00000570359 TEN1Q86WV5 123 aa6.98□□□□□ -1.29
VPS53-206ENST00000570359 SBSPONQ8IVN8 264 aa6.98□□□□□ -1.29
VPS53-206ENST00000570359 OVOL2Q9BRP0 275 aa6.98□□□□□ -1.29
VPS53-206ENST00000570359 CELA1Q9UNI1 258 aa6.98□□□□□ -1.29
VPS53-206ENST00000570359 TRBV6-4A0A1B0GX49 114 aa6.97□□□□□ -1.29
VPS53-206ENST00000570359 C5orf38Q86SI9 138 aa6.97□□□□□ -1.29
VPS53-206ENST00000570359 CITED1Q99966 193 aa6.97□□□□□ -1.29
VPS53-206ENST00000570359 RETNQ9HD89 108 aa6.97□□□□□ -1.29
VPS53-206ENST00000570359 M0QXV9 152 aa6.97□□□□□ -1.29
VPS53-206ENST00000570359 PRIMA1Q86XR5 153 aa6.97□□□□□ -1.29
VPS53-206ENST00000570359 PRO1854Q9UHT4 67 aa6.97□□□□□ -1.29
VPS53-206ENST00000570359 TRBV6-8A0A0A6YYG3 113 aa6.97□□□□□ -1.29
VPS53-206ENST00000570359 F5H768 121 aa6.97□□□□□ -1.29
VPS53-206ENST00000570359 HERVK_113P63121 156 aa6.97□□□□□ -1.29
VPS53-206ENST00000570359 BAHCC1Q9P281 2608 aa6.96□□□□□ -1.29
VPS53-206ENST00000570359 PAX4O43316 350 aa6.96□□□□□ -1.3
VPS53-206ENST00000570359 SHISA2Q6UWI4 295 aa6.96□□□□□ -1.3
VPS53-206ENST00000570359 IGLV10-54A0A075B6I4 117 aa6.96□□□□□ -1.3
VPS53-206ENST00000570359 SMIM1B2RUZ4 78 aa6.96□□□□□ -1.3
VPS53-206ENST00000570359 IGHV4-30-4P0DP06 118 aa6.96□□□□□ -1.3
VPS53-206ENST00000570359 XCL1P47992 114 aa6.96□□□□□ -1.3
VPS53-206ENST00000570359 DAD1P61803 113 aa6.96□□□□□ -1.3
VPS53-206ENST00000570359 Q6Q795 121 aa6.96□□□□□ -1.3
VPS53-206ENST00000570359 TCL1BO95988 128 aa6.95□□□□□ -1.3
VPS53-206ENST00000570359 NHLRC4P0CG21 123 aaPredicted RBP6.95□□□□□ -1.3
VPS53-206ENST00000570359 CARD19Q96LW7 228 aa6.95□□□□□ -1.3
VPS53-206ENST00000570359 LITAFQ99732 161 aa6.95□□□□□ -1.3
VPS53-206ENST00000570359 TENM3Q9P273 2699 aa6.94□□□□□ -1.3
VPS53-206ENST00000570359 TRBV20-1A0A075B6N2 111 aa6.94□□□□□ -1.3
VPS53-206ENST00000570359 B5MCH6 92 aa6.94□□□□□ -1.3
VPS53-206ENST00000570359 PRB2P02812 416 aaPredicted RBP6.94□□□□□ -1.3
VPS53-206ENST00000570359 APOC4P55056 127 aa6.94□□□□□ -1.3
VPS53-206ENST00000570359 TIRAPP58753 221 aa6.93□□□□□ -1.3
VPS53-206ENST00000570359 HERV-K104P63124 156 aa6.93□□□□□ -1.3
VPS53-206ENST00000570359 MIAQ16674 131 aa6.93□□□□□ -1.3
VPS53-206ENST00000570359 PRO0255Q9UI72 69 aa6.93□□□□□ -1.3
VPS53-206ENST00000570359 IGHV3-33P01772 117 aa6.92□□□□□ -1.3
VPS53-206ENST00000570359 NDUFV3P56181 108 aaKnown RBP6.92□□□□□ -1.3
VPS53-206ENST00000570359 KRTAP24-1Q3LI83 254 aa6.92□□□□□ -1.3
VPS53-206ENST00000570359 C3orf56Q8N813 242 aa6.92□□□□□ -1.3
VPS53-206ENST00000570359 PFN2P35080 140 aa6.92□□□□□ -1.3
VPS53-206ENST00000570359 KIR2DL5BQ8NHK3 375 aa6.92□□□□□ -1.3
VPS53-206ENST00000570359 NDUFA1O15239 70 aa6.91□□□□□ -1.3
VPS53-206ENST00000570359 RPL13AP40429 203 aaKnown RBP6.91□□□□□ -1.3
VPS53-206ENST00000570359 CIRBPQ14011 172 aaKnown RBP6.91□□□□□ -1.3
VPS53-206ENST00000570359 LINC01600Q96MT4 127 aa6.91□□□□□ -1.3
VPS53-206ENST00000570359 IGLV5-45A0A087WSX0 123 aa6.91□□□□□ -1.3
VPS53-206ENST00000570359 C9JAW5 83 aa6.91□□□□□ -1.3
VPS53-206ENST00000570359 ANGP03950 147 aaKnown RBP6.91□□□□□ -1.3
VPS53-206ENST00000570359 GAGE2BQ13066 116 aa6.91□□□□□ -1.3
VPS53-206ENST00000570359 GAGE2EQ4V326 116 aa6.91□□□□□ -1.3
VPS53-206ENST00000570359 CLEC2BQ92478 149 aa6.91□□□□□ -1.3
VPS53-206ENST00000570359 GAGE2DQ9UEU5 116 aa6.91□□□□□ -1.3
VPS53-206ENST00000570359 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.9□□□□□ -1.3
VPS53-206ENST00000570359 CYSRT1A8MQ03 144 aa6.9□□□□□ -1.3
VPS53-206ENST00000570359 TRIAP1O43715 76 aa6.9□□□□□ -1.3
VPS53-206ENST00000570359 LINC00269Q8N2A0 174 aa6.9□□□□□ -1.3
VPS53-206ENST00000570359 CSDC2Q9Y534 153 aaKnown RBP6.9□□□□□ -1.3
VPS53-206ENST00000570359 IFITM1P13164 125 aa6.9□□□□□ -1.31
VPS53-206ENST00000570359 LINC00158P58513 81 aa6.9□□□□□ -1.31
VPS53-206ENST00000570359 KRTAP10-11P60412 298 aa6.9□□□□□ -1.31
VPS53-206ENST00000570359 COX7B2Q8TF08 81 aa6.9□□□□□ -1.31
VPS53-206ENST00000570359 IGLV5-39A0A0G2JS06 123 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms