RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 GRIFINA4D1Z8 144 aa2.59□□□□□ -1.99
VPS35-204ENST00000563884 KRBOX1C9JBD0 128 aa2.59□□□□□ -1.99
VPS35-204ENST00000563884 NCR2O95944 276 aa2.59□□□□□ -1.99
VPS35-204ENST00000563884 GNG5P63218 68 aa2.59□□□□□ -1.99
VPS35-204ENST00000563884 ATP6V1FQ16864 119 aa2.59□□□□□ -1.99
VPS35-204ENST00000563884 GCSAMLQ5JQS6 135 aa2.59□□□□□ -1.99
VPS35-204ENST00000563884 SPANXN1Q5VSR9 72 aa2.59□□□□□ -1.99
VPS35-204ENST00000563884 CEND1Q8N111 149 aa2.59□□□□□ -1.99
VPS35-204ENST00000563884 C3orf22Q8N5N4 141 aa2.59□□□□□ -1.99
VPS35-204ENST00000563884 MDN1Q9NU22 5596 aa2.58□□□□□ -2
VPS35-204ENST00000563884 C1orf196B1AJZ1 125 aa2.58□□□□□ -2
VPS35-204ENST00000563884 NDUFC2-KCTD14E9PQ53 114 aa2.58□□□□□ -2
VPS35-204ENST00000563884 C17orf112F2Z3M2 114 aa2.58□□□□□ -2
VPS35-204ENST00000563884 KRTAP5-8O75690 187 aa2.58□□□□□ -2
VPS35-204ENST00000563884 SFT2D2O95562 160 aa2.58□□□□□ -2
VPS35-204ENST00000563884 APCSP02743 223 aa2.58□□□□□ -2
VPS35-204ENST00000563884 MT1FP04733 61 aa2.58□□□□□ -2
VPS35-204ENST00000563884 MGPP08493 103 aa2.58□□□□□ -2
VPS35-204ENST00000563884 PVALBP20472 110 aaPredicted RBP2.58□□□□□ -2
VPS35-204ENST00000563884 FAUP35544 74 aaKnown RBP2.58□□□□□ -2
VPS35-204ENST00000563884 NKX2-5P52952 324 aaPredicted RBP2.58□□□□□ -2
VPS35-204ENST00000563884 PPP1R1AQ13522 171 aa2.58□□□□□ -2
VPS35-204ENST00000563884 RASL11AQ6T310 242 aa2.58□□□□□ -2
VPS35-204ENST00000563884 MRPL55Q7Z7F7 128 aaKnown RBP2.58□□□□□ -2
VPS35-204ENST00000563884 LINC00518Q8N0U6 118 aa2.58□□□□□ -2
VPS35-204ENST00000563884 CCDC32Q9BV29 185 aa2.58□□□□□ -2
VPS35-204ENST00000563884 GNB1LQ9BYB4 327 aa2.58□□□□□ -2
VPS35-204ENST00000563884 CYTL1Q9NRR1 136 aa2.58□□□□□ -2
VPS35-204ENST00000563884 MCUBQ9NWR8 336 aa2.58□□□□□ -2
VPS35-204ENST00000563884 ZNF706Q9Y5V0 76 aaPredicted RBP2.58□□□□□ -2
VPS35-204ENST00000563884 C7orf66A4D0T2 115 aa2.57□□□□□ -2
VPS35-204ENST00000563884 A4D1N5 150 aa2.57□□□□□ -2
VPS35-204ENST00000563884 M0QY20 66 aa2.57□□□□□ -2
VPS35-204ENST00000563884 CST7O76096 145 aa2.57□□□□□ -2
VPS35-204ENST00000563884 OR5AL1P0C617 328 aa2.57□□□□□ -2
VPS35-204ENST00000563884 SULT1A1P50225 295 aa2.57□□□□□ -2
VPS35-204ENST00000563884 SMAGPQ0VAQ4 97 aa2.57□□□□□ -2
VPS35-204ENST00000563884 GEMIN7Q9H840 131 aaKnown RBP2.57□□□□□ -2
VPS35-204ENST00000563884 C22orf24Q9Y442 160 aa2.57□□□□□ -2
VPS35-204ENST00000563884 ALG5Q9Y673 324 aa2.57□□□□□ -2
VPS35-204ENST00000563884 TRBV30A0A0K0K1B3 111 aa2.56□□□□□ -2
VPS35-204ENST00000563884 C20orf202A1L168 122 aa2.56□□□□□ -2
VPS35-204ENST00000563884 CXCL1P09341 107 aa2.56□□□□□ -2
VPS35-204ENST00000563884 NTF3P20783 257 aa2.56□□□□□ -2
VPS35-204ENST00000563884 NCS1P62166 190 aa2.56□□□□□ -2
VPS35-204ENST00000563884 KRTAP13-1Q8IUC0 172 aa2.56□□□□□ -2
VPS35-204ENST00000563884 OR10AG1Q8NH19 301 aa2.56□□□□□ -2
VPS35-204ENST00000563884 ORAOV1Q8WV07 137 aa2.56□□□□□ -2
VPS35-204ENST00000563884 SMIM4Q8WVI0 70 aa2.56□□□□□ -2
VPS35-204ENST00000563884 NIT2Q9NQR4 276 aa2.56□□□□□ -2
VPS35-204ENST00000563884 ARL2-SNX15V9GYD0 113 aa2.56□□□□□ -2
VPS35-204ENST00000563884 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.55□□□□□ -2
VPS35-204ENST00000563884 TMSB15BA0A087X1C1 80 aa2.55□□□□□ -2
VPS35-204ENST00000563884 IGKV2-29A2NJV5 120 aaPredicted RBP2.55□□□□□ -2
VPS35-204ENST00000563884 SH2D1AO60880 128 aa2.55□□□□□ -2
VPS35-204ENST00000563884 SERF1AO75920 110 aa2.55□□□□□ -2
VPS35-204ENST00000563884 MCFD2Q8NI22 146 aa2.55□□□□□ -2
VPS35-204ENST00000563884 FAM210AQ96ND0 272 aa2.55□□□□□ -2
VPS35-204ENST00000563884 C6orf48Q9UBA6 75 aa2.55□□□□□ -2
VPS35-204ENST00000563884 A0A1W2PPV4 95 aa2.54□□□□□ -2
VPS35-204ENST00000563884 ANKRD20A5PA0PJZ0 165 aa2.54□□□□□ -2
VPS35-204ENST00000563884 C9orf92A6NGG3 77 aa2.54□□□□□ -2
VPS35-204ENST00000563884 UBE2G2P60604 165 aa2.54□□□□□ -2
VPS35-204ENST00000563884 RPL37P61927 97 aaKnown RBP2.54□□□□□ -2
VPS35-204ENST00000563884 Q86TA4 180 aa2.54□□□□□ -2
VPS35-204ENST00000563884 LINC01551Q86U37 167 aa2.54□□□□□ -2
VPS35-204ENST00000563884 MRAP2Q96G30 205 aa2.54□□□□□ -2
VPS35-204ENST00000563884 ZFP30Q9Y2G7 519 aa2.54□□□□□ -2
VPS35-204ENST00000563884 SNAI2O43623 268 aa2.53□□□□□ -2
VPS35-204ENST00000563884 HERV-K104P63124 156 aa2.53□□□□□ -2
VPS35-204ENST00000563884 C6orf99Q4VX62 202 aa2.53□□□□□ -2
VPS35-204ENST00000563884 UNQ6190/PRO20217Q6UXQ8 127 aa2.53□□□□□ -2
VPS35-204ENST00000563884 C5orf38Q86SI9 138 aa2.53□□□□□ -2
VPS35-204ENST00000563884 MARVELD1Q9BSK0 173 aa2.53□□□□□ -2
VPS35-204ENST00000563884 FUNDC2Q9BWH2 189 aa2.53□□□□□ -2
VPS35-204ENST00000563884 EPDR1Q9UM22 224 aa2.53□□□□□ -2
VPS35-204ENST00000563884 LSM5Q9Y4Y9 91 aaKnown RBP2.53□□□□□ -2
VPS35-204ENST00000563884 IGLV6-57P01721 117 aa2.52□□□□□ -2.01
VPS35-204ENST00000563884 TRGC1P0CF51 173 aa2.52□□□□□ -2.01
VPS35-204ENST00000563884 AP3S2P59780 193 aa2.52□□□□□ -2.01
VPS35-204ENST00000563884 VBP1P61758 197 aa2.52□□□□□ -2.01
VPS35-204ENST00000563884 FAM19A1Q7Z5A9 133 aa2.52□□□□□ -2.01
VPS35-204ENST00000563884 MRPL52Q86TS9 123 aaKnown RBP2.52□□□□□ -2.01
VPS35-204ENST00000563884 CBLN2Q8IUK8 224 aa2.52□□□□□ -2.01
VPS35-204ENST00000563884 PLEKHB2Q96CS7 222 aa2.52□□□□□ -2.01
VPS35-204ENST00000563884 LIMD2Q9BT23 127 aa2.52□□□□□ -2.01
VPS35-204ENST00000563884 CDC42SE2Q9NRR3 84 aa2.52□□□□□ -2.01
VPS35-204ENST00000563884 TRBV20-1A0A075B6N2 111 aa2.51□□□□□ -2.01
VPS35-204ENST00000563884 C9orf170A2RU37 121 aa2.51□□□□□ -2.01
VPS35-204ENST00000563884 RAB19A4D1S5 217 aa2.51□□□□□ -2.01
VPS35-204ENST00000563884 ZNF727A8MUV8 499 aa2.51□□□□□ -2.01
VPS35-204ENST00000563884 TAGLN2P37802 199 aaKnown RBP2.51□□□□□ -2.01
VPS35-204ENST00000563884 UBE2G1P62253 170 aa2.51□□□□□ -2.01
VPS35-204ENST00000563884 PRLHP81277 87 aa2.51□□□□□ -2.01
VPS35-204ENST00000563884 FAM231DQ6ZW35 169 aa2.51□□□□□ -2.01
VPS35-204ENST00000563884 NKAPP1Q8N9T2 125 aa2.51□□□□□ -2.01
VPS35-204ENST00000563884 SPRR4Q96PI1 79 aa2.51□□□□□ -2.01
VPS35-204ENST00000563884 WDR61Q9GZS3 305 aaKnown RBP2.51□□□□□ -2.01
VPS35-204ENST00000563884 TMEM167BQ9NRX6 74 aa2.51□□□□□ -2.01
VPS35-204ENST00000563884 TRAV13-1A0A0B4J241 112 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms