RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 LINC01549A6NIU2 74 aa9.5□□□□□ -0.89
USP3-221ENST00000561442 RPL39P62891 51 aaKnown RBP9.5□□□□□ -0.89
USP3-221ENST00000561442 DGAT2L7PQ6IED9 249 aa9.5□□□□□ -0.89
USP3-221ENST00000561442 PMCHL2Q9BQD1 86 aa9.49□□□□□ -0.89
USP3-221ENST00000561442 UBE2D4Q9Y2X8 147 aa9.49□□□□□ -0.89
USP3-221ENST00000561442 C16orf90A8MZG2 172 aa9.48□□□□□ -0.89
USP3-221ENST00000561442 RNASE13Q5GAN3 156 aaKnown RBP9.48□□□□□ -0.89
USP3-221ENST00000561442 A0A096LNJ9 63 aa9.47□□□□□ -0.89
USP3-221ENST00000561442 TRAV8-4A0A0B4J246 113 aa9.47□□□□□ -0.89
USP3-221ENST00000561442 G0S2P27469 103 aa9.47□□□□□ -0.89
USP3-221ENST00000561442 HNRNPA3P51991 378 aaKnown RBP9.47□□□□□ -0.89
USP3-221ENST00000561442 SMAGPQ0VAQ4 97 aa9.47□□□□□ -0.89
USP3-221ENST00000561442 KRTAP26-1Q6PEX3 210 aa9.47□□□□□ -0.89
USP3-221ENST00000561442 Q6ZUT4 128 aa9.47□□□□□ -0.89
USP3-221ENST00000561442 Q8N814 137 aa9.47□□□□□ -0.89
USP3-221ENST00000561442 SNHG12Q9BXW3 62 aa9.47□□□□□ -0.89
USP3-221ENST00000561442 CDC42SE2Q9NRR3 84 aa9.47□□□□□ -0.89
USP3-221ENST00000561442 ATP5LO75964 103 aa9.46□□□□□ -0.9
USP3-221ENST00000561442 IFI27L1Q96BM0 104 aa9.46□□□□□ -0.9
USP3-221ENST00000561442 GAGE12HA6NDE8 117 aa9.45□□□□□ -0.9
USP3-221ENST00000561442 ORMDL2Q53FV1 153 aa9.45□□□□□ -0.9
USP3-221ENST00000561442 Q6ZN92 141 aa9.45□□□□□ -0.9
USP3-221ENST00000561442 CHCHD10Q8WYQ3 142 aaPredicted RBP9.45□□□□□ -0.9
USP3-221ENST00000561442 OPRPNQ99935 248 aaPredicted RBP9.45□□□□□ -0.9
USP3-221ENST00000561442 TIMM21Q9BVV7 248 aa9.45□□□□□ -0.9
USP3-221ENST00000561442 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.44□□□□□ -0.9
USP3-221ENST00000561442 LINC00959A0A1B0GUT2 108 aa9.44□□□□□ -0.9
USP3-221ENST00000561442 USP17L23D6RBM5 183 aa9.44□□□□□ -0.9
USP3-221ENST00000561442 XCL1P47992 114 aa9.44□□□□□ -0.9
USP3-221ENST00000561442 LINC00173Q6ZV60 143 aa9.44□□□□□ -0.9
USP3-221ENST00000561442 SPANXA1Q9NS26 97 aa9.44□□□□□ -0.9
USP3-221ENST00000561442 PGPEP1Q9NXJ5 209 aa9.44□□□□□ -0.9
USP3-221ENST00000561442 CSDC2Q9Y534 153 aaKnown RBP9.44□□□□□ -0.9
USP3-221ENST00000561442 APOBP04114 4563 aaKnown RBP9.44□□□□□ -0.9
USP3-221ENST00000561442 IGLV5-52A0A0A0MRZ9 124 aa9.43□□□□□ -0.9
USP3-221ENST00000561442 SLC25A34Q6PIV7 304 aa9.43□□□□□ -0.9
USP3-221ENST00000561442 CYSLTR1Q9Y271 337 aa9.43□□□□□ -0.9
USP3-221ENST00000561442 DNAH8Q96JB1 4490 aa9.43□□□□□ -0.9
USP3-221ENST00000561442 TRAV13-1A0A0B4J241 112 aa9.42□□□□□ -0.9
USP3-221ENST00000561442 CCL25O15444 150 aa9.42□□□□□ -0.9
USP3-221ENST00000561442 COL5A1-AS1Q5SY13 56 aa9.42□□□□□ -0.9
USP3-221ENST00000561442 C2orf66Q6UXQ4 117 aa9.42□□□□□ -0.9
USP3-221ENST00000561442 ATOH7Q8N100 152 aa9.42□□□□□ -0.9
USP3-221ENST00000561442 FAM104AQ969W3 186 aa9.42□□□□□ -0.9
USP3-221ENST00000561442 SS18Q15532 418 aa9.41□□□□□ -0.9
USP3-221ENST00000561442 NTN5Q8WTR8 489 aaPredicted RBP9.41□□□□□ -0.9
USP3-221ENST00000561442 IGLV4-3A0A075B6K6 122 aa9.4□□□□□ -0.9
USP3-221ENST00000561442 DLEU1O43261 78 aa9.4□□□□□ -0.9
USP3-221ENST00000561442 COX8AP10176 69 aa9.4□□□□□ -0.9
USP3-221ENST00000561442 MRPS36P82909 103 aaKnown RBP9.4□□□□□ -0.9
USP3-221ENST00000561442 FOXI1Q12951 378 aa9.4□□□□□ -0.9
USP3-221ENST00000561442 C14orf177Q52M58 125 aa9.4□□□□□ -0.9
USP3-221ENST00000561442 PRSS1P07477 247 aa9.39□□□□□ -0.91
USP3-221ENST00000561442 ZC2HC1BQ5TFG8 222 aa9.39□□□□□ -0.91
USP3-221ENST00000561442 PYGO1Q9Y3Y4 419 aa9.39□□□□□ -0.91
USP3-221ENST00000561442 TRAV12-1A0A0B4J245 112 aa9.38□□□□□ -0.91
USP3-221ENST00000561442 A0A1B0GV90 55 aa9.38□□□□□ -0.91
USP3-221ENST00000561442 KRTAP10-1P60331 282 aa9.38□□□□□ -0.91
USP3-221ENST00000561442 MAJINQ3KP22 176 aa9.38□□□□□ -0.91
USP3-221ENST00000561442 HSPG2P98160 4391 aa9.38□□□□□ -0.91
USP3-221ENST00000561442 hDV102S1A0JD36 115 aa9.37□□□□□ -0.91
USP3-221ENST00000561442 H0Y8G0 127 aa9.37□□□□□ -0.91
USP3-221ENST00000561442 GCSHP23434 173 aa9.37□□□□□ -0.91
USP3-221ENST00000561442 CD164L2Q6UWJ8 174 aa9.37□□□□□ -0.91
USP3-221ENST00000561442 C15orf56Q8N910 161 aa9.37□□□□□ -0.91
USP3-221ENST00000561442 TOMM6Q96B49 74 aa9.37□□□□□ -0.91
USP3-221ENST00000561442 TMEM141Q96I45 108 aa9.37□□□□□ -0.91
USP3-221ENST00000561442 KIAA1109Q2LD37 5005 aa9.37□□□□□ -0.91
USP3-221ENST00000561442 IGIPA6NJ69 53 aa9.36□□□□□ -0.91
USP3-221ENST00000561442 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.36□□□□□ -0.91
USP3-221ENST00000561442 PLNP26678 52 aa9.36□□□□□ -0.91
USP3-221ENST00000561442 ODF1Q14990 250 aa9.36□□□□□ -0.91
USP3-221ENST00000561442 LINC01620Q4KN68 170 aa9.36□□□□□ -0.91
USP3-221ENST00000561442 HIGD2BQ4VC39 106 aa9.36□□□□□ -0.91
USP3-221ENST00000561442 SCGB3A1Q96QR1 104 aa9.36□□□□□ -0.91
USP3-221ENST00000561442 DPM2O94777 84 aa9.35□□□□□ -0.91
USP3-221ENST00000561442 IGKCP01834 107 aa9.35□□□□□ -0.91
USP3-221ENST00000561442 CFAP161Q6P656 301 aa9.35□□□□□ -0.91
USP3-221ENST00000561442 RYR1P21817 5038 aa9.34□□□□□ -0.91
USP3-221ENST00000561442 HERC2O95714 4834 aa9.34□□□□□ -0.91
USP3-221ENST00000561442 COX7A2LO14548 114 aa9.34□□□□□ -0.91
USP3-221ENST00000561442 C5orf38Q86SI9 138 aa9.34□□□□□ -0.91
USP3-221ENST00000561442 BOD1L2Q8IYS8 172 aa9.34□□□□□ -0.91
USP3-221ENST00000561442 TIMM17AQ99595 171 aa9.34□□□□□ -0.91
USP3-221ENST00000561442 VCX2Q9H322 139 aa9.34□□□□□ -0.91
USP3-221ENST00000561442 PAPPA-AS1Q5QFB9 102 aa9.33□□□□□ -0.92
USP3-221ENST00000561442 LINC00469Q8N7U9 141 aa9.33□□□□□ -0.92
USP3-221ENST00000561442 AMELXQ99217 191 aa9.33□□□□□ -0.92
USP3-221ENST00000561442 IGHV1-58A0A0C4DH39 117 aa9.32□□□□□ -0.92
USP3-221ENST00000561442 MALP21145 153 aa9.32□□□□□ -0.92
USP3-221ENST00000561442 UBE2D1P51668 147 aa9.32□□□□□ -0.92
USP3-221ENST00000561442 ERASQ7Z444 233 aa9.32□□□□□ -0.92
USP3-221ENST00000561442 LINC00526Q96FQ7 95 aa9.32□□□□□ -0.92
USP3-221ENST00000561442 F8VRH5 84 aa9.31□□□□□ -0.92
USP3-221ENST00000561442 SLPIP03973 132 aa9.31□□□□□ -0.92
USP3-221ENST00000561442 NPSP0C0P6 89 aa9.31□□□□□ -0.92
USP3-221ENST00000561442 BATFQ16520 125 aa9.31□□□□□ -0.92
USP3-221ENST00000561442 LINC00242Q5T6M2 205 aa9.31□□□□□ -0.92
USP3-221ENST00000561442 GVQW2A0A096LPI5 108 aaPredicted RBP9.3□□□□□ -0.92
USP3-221ENST00000561442 SEC11AP67812 179 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms