RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.25□□□□□ -0.13
SNX1-210ENST00000560260 HSBP1O75506 76 aa14.25□□□□□ -0.13
SNX1-210ENST00000560260 C2orf88Q9BSF0 95 aa14.25□□□□□ -0.13
SNX1-210ENST00000560260 DNAH8Q96JB1 4490 aa14.24□□□□□ -0.13
SNX1-210ENST00000560260 PRSS1P07477 247 aa14.24□□□□□ -0.13
SNX1-210ENST00000560260 APOBP04114 4563 aaKnown RBP14.24□□□□□ -0.13
SNX1-210ENST00000560260 COX6A2Q02221 97 aa14.23□□□□□ -0.13
SNX1-210ENST00000560260 PAPPA-AS1Q5QFB9 102 aa14.23□□□□□ -0.13
SNX1-210ENST00000560260 NTN5Q8WTR8 489 aaPredicted RBP14.23□□□□□ -0.13
SNX1-210ENST00000560260 IGHV3OR16-9A0A0B4J2B5 98 aa14.22□□□□□ -0.13
SNX1-210ENST00000560260 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.22□□□□□ -0.13
SNX1-210ENST00000560260 C5orf38Q86SI9 138 aa14.22□□□□□ -0.13
SNX1-210ENST00000560260 COX7A2LO14548 114 aa14.21□□□□□ -0.13
SNX1-210ENST00000560260 FAM19A3Q7Z5A8 133 aa14.21□□□□□ -0.13
SNX1-210ENST00000560260 CST9LQ9H4G1 147 aa14.21□□□□□ -0.13
SNX1-210ENST00000560260 HIGD2BQ4VC39 106 aa14.2□□□□□ -0.14
SNX1-210ENST00000560260 C14orf177Q52M58 125 aa14.2□□□□□ -0.14
SNX1-210ENST00000560260 PGPEP1Q9NXJ5 209 aa14.2□□□□□ -0.14
SNX1-210ENST00000560260 IGLV5-52A0A0A0MRZ9 124 aa14.19□□□□□ -0.14
SNX1-210ENST00000560260 A0A0J9YXV3 536 aa14.19□□□□□ -0.14
SNX1-210ENST00000560260 C16orf90A8MZG2 172 aa14.19□□□□□ -0.14
SNX1-210ENST00000560260 ATP5LO75964 103 aa14.19□□□□□ -0.14
SNX1-210ENST00000560260 PMVKQ15126 192 aa14.19□□□□□ -0.14
SNX1-210ENST00000560260 CDPF1Q6NVV7 123 aa14.19□□□□□ -0.14
SNX1-210ENST00000560260 KIAA1109Q2LD37 5005 aa14.19□□□□□ -0.14
SNX1-210ENST00000560260 GVQW2A0A096LPI5 108 aaPredicted RBP14.18□□□□□ -0.14
SNX1-210ENST00000560260 IGHV1-58A0A0C4DH39 117 aa14.17□□□□□ -0.14
SNX1-210ENST00000560260 hDV102S1A0JD36 115 aa14.17□□□□□ -0.14
SNX1-210ENST00000560260 SLPIP03973 132 aa14.17□□□□□ -0.14
SNX1-210ENST00000560260 RYR1P21817 5038 aa14.17□□□□□ -0.14
SNX1-210ENST00000560260 CFAP161Q6P656 301 aa14.16□□□□□ -0.14
SNX1-210ENST00000560260 IFI27L1Q96BM0 104 aa14.15□□□□□ -0.14
SNX1-210ENST00000560260 LINC00526Q96FQ7 95 aa14.15□□□□□ -0.14
SNX1-210ENST00000560260 A0A087WZ39 114 aa14.15□□□□□ -0.15
SNX1-210ENST00000560260 MALP21145 153 aa14.15□□□□□ -0.15
SNX1-210ENST00000560260 NDUFA6P56556 154 aa14.15□□□□□ -0.15
SNX1-210ENST00000560260 LINC01620Q4KN68 170 aa14.15□□□□□ -0.15
SNX1-210ENST00000560260 COA6Q5JTJ3 125 aaKnown RBP14.15□□□□□ -0.15
SNX1-210ENST00000560260 KRTAP10-1P60331 282 aa14.14□□□□□ -0.15
SNX1-210ENST00000560260 IGLV4-69A0A075B6H9 119 aa14.13□□□□□ -0.15
SNX1-210ENST00000560260 TINCRA0A1B0GVN0 87 aa14.13□□□□□ -0.15
SNX1-210ENST00000560260 LEPROTL1O95214 131 aa14.13□□□□□ -0.15
SNX1-210ENST00000560260 HERVK_113P63121 156 aa14.13□□□□□ -0.15
SNX1-210ENST00000560260 CDKN2A-AS1Q9UH64 79 aa14.13□□□□□ -0.15
SNX1-210ENST00000560260 IGHV3-64A0A075B6Q5 118 aa14.12□□□□□ -0.15
SNX1-210ENST00000560260 IGLC3P0DOY3 106 aa14.12□□□□□ -0.15
SNX1-210ENST00000560260 CNBPP62633 177 aaKnown RBP14.12□□□□□ -0.15
SNX1-210ENST00000560260 IGLV5-45A0A087WSX0 123 aa14.11□□□□□ -0.15
SNX1-210ENST00000560260 FABP4P15090 132 aa14.11□□□□□ -0.15
SNX1-210ENST00000560260 GCSHP23434 173 aa14.11□□□□□ -0.15
SNX1-210ENST00000560260 SEC11AP67812 179 aa14.11□□□□□ -0.15
SNX1-210ENST00000560260 ORAOV1Q8WV07 137 aa14.11□□□□□ -0.15
SNX1-210ENST00000560260 GEMIN7Q9H840 131 aaKnown RBP14.11□□□□□ -0.15
SNX1-210ENST00000560260 SPAG11BQ08648 103 aa14.1□□□□□ -0.15
SNX1-210ENST00000560260 CHAC1Q9BUX1 264 aa14.1□□□□□ -0.15
SNX1-210ENST00000560260 TRAV12-1A0A0B4J245 112 aa14.09□□□□□ -0.15
SNX1-210ENST00000560260 APOMO95445 188 aa14.09□□□□□ -0.15
SNX1-210ENST00000560260 LINC01561Q8N1V8 128 aa14.09□□□□□ -0.15
SNX1-210ENST00000560260 LINC00469Q8N7U9 141 aa14.09□□□□□ -0.15
SNX1-210ENST00000560260 OR10D4PQ8NGN7 298 aa14.08□□□□□ -0.16
SNX1-210ENST00000560260 C11orf86A6NJI1 115 aa14.07□□□□□ -0.16
SNX1-210ENST00000560260 ZNF22P17026 224 aaPredicted RBP14.07□□□□□ -0.16
SNX1-210ENST00000560260 KIAA0087Q14695 138 aa14.07□□□□□ -0.16
SNX1-210ENST00000560260 C9orf163Q8N9P6 203 aa14.07□□□□□ -0.16
SNX1-210ENST00000560260 HSPB8Q9UJY1 196 aa14.07□□□□□ -0.16
SNX1-210ENST00000560260 CHTOPQ9Y3Y2 248 aaKnown RBP14.07□□□□□ -0.16
SNX1-210ENST00000560260 HSPG2P98160 4391 aa14.06□□□□□ -0.16
SNX1-210ENST00000560260 ZNF561-AS1K7EIQ3 104 aa14.06□□□□□ -0.16
SNX1-210ENST00000560260 HERC2O95714 4834 aa14.05□□□□□ -0.16
SNX1-210ENST00000560260 SMIM1B2RUZ4 78 aa14.05□□□□□ -0.16
SNX1-210ENST00000560260 H0Y8G0 127 aa14.05□□□□□ -0.16
SNX1-210ENST00000560260 MRPL35Q9NZE8 188 aaKnown RBP14.05□□□□□ -0.16
SNX1-210ENST00000560260 ODF1Q14990 250 aa14.04□□□□□ -0.16
SNX1-210ENST00000560260 Q6ZRU5 148 aa14.03□□□□□ -0.16
SNX1-210ENST00000560260 C2orf48Q96LS8 159 aa14.03□□□□□ -0.16
SNX1-210ENST00000560260 PACRGQ96M98 296 aaPredicted RBP14.03□□□□□ -0.16
SNX1-210ENST00000560260 FAM30AQ9NZY2 134 aa14.03□□□□□ -0.16
SNX1-210ENST00000560260 F8VRH5 84 aa14.02□□□□□ -0.17
SNX1-210ENST00000560260 SPINK8P0C7L1 97 aa14.02□□□□□ -0.17
SNX1-210ENST00000560260 CARD19Q96LW7 228 aa14.02□□□□□ -0.17
SNX1-210ENST00000560260 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.01□□□□□ -0.17
SNX1-210ENST00000560260 SYCNQ0VAF6 134 aa14.01□□□□□ -0.17
SNX1-210ENST00000560260 CAMK2N2Q96S95 79 aa14.01□□□□□ -0.17
SNX1-210ENST00000560260 C10orf25Q5T742 122 aa14□□□□□ -0.17
SNX1-210ENST00000560260 SDIM1Q6ZPB5 146 aa13.99□□□□□ -0.17
SNX1-210ENST00000560260 TOMM7Q9P0U1 55 aa13.99□□□□□ -0.17
SNX1-210ENST00000560260 C2orf82Q6UX34 121 aa13.98□□□□□ -0.17
SNX1-210ENST00000560260 Q6ZSA8 131 aa13.98□□□□□ -0.17
SNX1-210ENST00000560260 PMCHL2Q9BQD1 86 aa13.98□□□□□ -0.17
SNX1-210ENST00000560260 MAP1LC3CQ9BXW4 147 aa13.98□□□□□ -0.17
SNX1-210ENST00000560260 H3BRM9 83 aa13.97□□□□□ -0.17
SNX1-210ENST00000560260 PANO1I0J062 215 aa13.97□□□□□ -0.17
SNX1-210ENST00000560260 HAMPP81172 84 aa13.97□□□□□ -0.17
SNX1-210ENST00000560260 TMEM170BQ5T4T1 132 aa13.97□□□□□ -0.17
SNX1-210ENST00000560260 UNQ6190/PRO20217Q6UXQ8 127 aa13.97□□□□□ -0.17
SNX1-210ENST00000560260 Q8IZM0 81 aa13.97□□□□□ -0.17
SNX1-210ENST00000560260 HIST3H2BBQ8N257 126 aa13.97□□□□□ -0.17
SNX1-210ENST00000560260 IGLV5-39A0A0G2JS06 123 aa13.96□□□□□ -0.17
SNX1-210ENST00000560260 SYS1-DBNDD2H3BUS1 97 aa13.96□□□□□ -0.17
SNX1-210ENST00000560260 NDUFA1O15239 70 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms