RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 GEMIN7Q9H840 131 aaKnown RBP6.65□□□□□ -1.34
USP3-216ENST00000559873 PGPEP1Q9NXJ5 209 aa6.65□□□□□ -1.34
USP3-216ENST00000559873 IGLV5-52A0A0A0MRZ9 124 aa6.64□□□□□ -1.35
USP3-216ENST00000559873 NDUFA6P56556 154 aa6.64□□□□□ -1.35
USP3-216ENST00000559873 LINC00242Q5T6M2 205 aa6.64□□□□□ -1.35
USP3-216ENST00000559873 FAM19A3Q7Z5A8 133 aa6.64□□□□□ -1.35
USP3-216ENST00000559873 HSPB8Q9UJY1 196 aa6.64□□□□□ -1.35
USP3-216ENST00000559873 DNAH11Q96DT5 4516 aa6.63□□□□□ -1.35
USP3-216ENST00000559873 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.63□□□□□ -1.35
USP3-216ENST00000559873 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.63□□□□□ -1.35
USP3-216ENST00000559873 hDV102S1A0JD36 115 aa6.63□□□□□ -1.35
USP3-216ENST00000559873 C16orf90A8MZG2 172 aa6.63□□□□□ -1.35
USP3-216ENST00000559873 PRSS1P07477 247 aa6.63□□□□□ -1.35
USP3-216ENST00000559873 WFDC2Q14508 124 aa6.63□□□□□ -1.35
USP3-216ENST00000559873 FAM19A2Q8N3H0 131 aa6.63□□□□□ -1.35
USP3-216ENST00000559873 IFI27L1Q96BM0 104 aa6.63□□□□□ -1.35
USP3-216ENST00000559873 PACRGQ96M98 296 aaPredicted RBP6.63□□□□□ -1.35
USP3-216ENST00000559873 CST9LQ9H4G1 147 aa6.63□□□□□ -1.35
USP3-216ENST00000559873 GVQW2A0A096LPI5 108 aaPredicted RBP6.62□□□□□ -1.35
USP3-216ENST00000559873 IGHV3OR16-9A0A0B4J2B5 98 aa6.62□□□□□ -1.35
USP3-216ENST00000559873 TINCRA0A1B0GVN0 87 aa6.62□□□□□ -1.35
USP3-216ENST00000559873 ZNF561-AS1K7EIQ3 104 aa6.62□□□□□ -1.35
USP3-216ENST00000559873 LINC00310P59036 64 aa6.62□□□□□ -1.35
USP3-216ENST00000559873 COA6Q5JTJ3 125 aaKnown RBP6.62□□□□□ -1.35
USP3-216ENST00000559873 ZC2HC1BQ5TFG8 222 aa6.62□□□□□ -1.35
USP3-216ENST00000559873 C5orf38Q86SI9 138 aa6.62□□□□□ -1.35
USP3-216ENST00000559873 LINC01561Q8N1V8 128 aa6.62□□□□□ -1.35
USP3-216ENST00000559873 C15orf56Q8N910 161 aa6.62□□□□□ -1.35
USP3-216ENST00000559873 OR10D4PQ8NGN7 298 aa6.62□□□□□ -1.35
USP3-216ENST00000559873 A0A087WZ39 114 aa6.61□□□□□ -1.35
USP3-216ENST00000559873 TRAV12-1A0A0B4J245 112 aa6.61□□□□□ -1.35
USP3-216ENST00000559873 H3BRM9 83 aa6.61□□□□□ -1.35
USP3-216ENST00000559873 KRTAP10-2P60368 255 aa6.61□□□□□ -1.35
USP3-216ENST00000559873 LINC00469Q8N7U9 141 aa6.61□□□□□ -1.35
USP3-216ENST00000559873 CHAC1Q9BUX1 264 aa6.61□□□□□ -1.35
USP3-216ENST00000559873 PKIGQ9Y2B9 76 aa6.61□□□□□ -1.35
USP3-216ENST00000559873 EPPK1P58107 5090 aaKnown RBP6.6□□□□□ -1.35
USP3-216ENST00000559873 A0A0J9YXV3 536 aa6.6□□□□□ -1.35
USP3-216ENST00000559873 S100A6P06703 90 aa6.6□□□□□ -1.35
USP3-216ENST00000559873 IGLC3P0DOY3 106 aa6.6□□□□□ -1.35
USP3-216ENST00000559873 CNBPP62633 177 aaKnown RBP6.6□□□□□ -1.35
USP3-216ENST00000559873 SPAG11BQ08648 103 aa6.6□□□□□ -1.35
USP3-216ENST00000559873 HIGD2BQ4VC39 106 aa6.6□□□□□ -1.35
USP3-216ENST00000559873 ORAOV1Q8WV07 137 aa6.6□□□□□ -1.35
USP3-216ENST00000559873 MAP1LC3CQ9BXW4 147 aa6.6□□□□□ -1.35
USP3-216ENST00000559873 CHTOPQ9Y3Y2 248 aaKnown RBP6.6□□□□□ -1.35
USP3-216ENST00000559873 PKHD1P08F94 4074 aa6.6□□□□□ -1.35
USP3-216ENST00000559873 IGHV3-64A0A075B6Q5 118 aa6.59□□□□□ -1.35
USP3-216ENST00000559873 IGLV5-45A0A087WSX0 123 aa6.59□□□□□ -1.35
USP3-216ENST00000559873 F8VRH5 84 aa6.59□□□□□ -1.35
USP3-216ENST00000559873 FABP4P15090 132 aa6.59□□□□□ -1.35
USP3-216ENST00000559873 GCSHP23434 173 aa6.59□□□□□ -1.35
USP3-216ENST00000559873 DNAH5Q8TE73 4624 aa6.59□□□□□ -1.36
USP3-216ENST00000559873 PKD1P98161 4303 aa6.59□□□□□ -1.36
USP3-216ENST00000559873 F8WDY8 70 aa6.58□□□□□ -1.36
USP3-216ENST00000559873 H0Y8G0 127 aa6.58□□□□□ -1.36
USP3-216ENST00000559873 NUPR1O60356 82 aa6.58□□□□□ -1.36
USP3-216ENST00000559873 PRSS2P07478 247 aa6.58□□□□□ -1.36
USP3-216ENST00000559873 COX6A2Q02221 97 aa6.58□□□□□ -1.36
USP3-216ENST00000559873 C2orf48Q96LS8 159 aa6.58□□□□□ -1.36
USP3-216ENST00000559873 CDKN2A-AS1Q9UH64 79 aa6.58□□□□□ -1.36
USP3-216ENST00000559873 IGLV4-69A0A075B6H9 119 aa6.57□□□□□ -1.36
USP3-216ENST00000559873 NDUFA1O15239 70 aa6.57□□□□□ -1.36
USP3-216ENST00000559873 S100A2P29034 98 aa6.57□□□□□ -1.36
USP3-216ENST00000559873 CARD19Q96LW7 228 aa6.57□□□□□ -1.36
USP3-216ENST00000559873 CAMK2N2Q96S95 79 aa6.57□□□□□ -1.36
USP3-216ENST00000559873 BIRC6Q9NR09 4857 aa6.57□□□□□ -1.36
USP3-216ENST00000559873 DYNC1H1Q14204 4646 aaKnown RBP6.56□□□□□ -1.36
USP3-216ENST00000559873 PLNP26678 52 aa6.56□□□□□ -1.36
USP3-216ENST00000559873 CXCL5P42830 114 aa6.56□□□□□ -1.36
USP3-216ENST00000559873 SYCNQ0VAF6 134 aa6.56□□□□□ -1.36
USP3-216ENST00000559873 TMEM170BQ5T4T1 132 aa6.56□□□□□ -1.36
USP3-216ENST00000559873 Q8IZM0 81 aa6.56□□□□□ -1.36
USP3-216ENST00000559873 MRPL35Q9NZE8 188 aaKnown RBP6.56□□□□□ -1.36
USP3-216ENST00000559873 C20orf202A1L168 122 aa6.55□□□□□ -1.36
USP3-216ENST00000559873 C11orf86A6NJI1 115 aa6.55□□□□□ -1.36
USP3-216ENST00000559873 SMIM1B2RUZ4 78 aa6.55□□□□□ -1.36
USP3-216ENST00000559873 ZNF22P17026 224 aaPredicted RBP6.55□□□□□ -1.36
USP3-216ENST00000559873 FUSP35637 526 aaKnown RBP eCLIP6.55□□□□□ -1.36
USP3-216ENST00000559873 CKS1BP61024 79 aa6.55□□□□□ -1.36
USP3-216ENST00000559873 ODF1Q14990 250 aa6.55□□□□□ -1.36
USP3-216ENST00000559873 C9orf163Q8N9P6 203 aa6.55□□□□□ -1.36
USP3-216ENST00000559873 TOMM7Q9P0U1 55 aa6.55□□□□□ -1.36
USP3-216ENST00000559873 SYS1-DBNDD2H3BUS1 97 aa6.54□□□□□ -1.36
USP3-216ENST00000559873 DPM2O94777 84 aa6.54□□□□□ -1.36
USP3-216ENST00000559873 SPINK8P0C7L1 97 aa6.54□□□□□ -1.36
USP3-216ENST00000559873 AKR1D1P51857 326 aa6.54□□□□□ -1.36
USP3-216ENST00000559873 C6orf226Q5I0X4 101 aa6.54□□□□□ -1.36
USP3-216ENST00000559873 PET117Q6UWS5 81 aa6.54□□□□□ -1.36
USP3-216ENST00000559873 LINC00526Q96FQ7 95 aa6.54□□□□□ -1.36
USP3-216ENST00000559873 LRP1BQ9NZR2 4599 aa6.54□□□□□ -1.36
USP3-216ENST00000559873 TRBV30A0A0K0K1B3 111 aa6.53□□□□□ -1.36
USP3-216ENST00000559873 HERVK_113P61574 105 aa6.53□□□□□ -1.36
USP3-216ENST00000559873 SFTA2Q6UW10 78 aa6.53□□□□□ -1.36
USP3-216ENST00000559873 COX7B2Q8TF08 81 aa6.53□□□□□ -1.36
USP3-216ENST00000559873 IGKCP01834 107 aa6.52□□□□□ -1.37
USP3-216ENST00000559873 KRTAP10-1P60331 282 aa6.52□□□□□ -1.37
USP3-216ENST00000559873 KRTDAPP60985 99 aa6.52□□□□□ -1.37
USP3-216ENST00000559873 RNF151Q2KHN1 245 aa6.52□□□□□ -1.37
USP3-216ENST00000559873 Q6ZRU5 148 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms