RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 A0A1B0GV90 55 aa8.72□□□□□ -1.01
USP3-213ENST00000559711 CEND1Q8N111 149 aa8.72□□□□□ -1.01
USP3-213ENST00000559711 CCL25O15444 150 aa8.71□□□□□ -1.02
USP3-213ENST00000559711 IGHV3OR16-9A0A0B4J2B5 98 aa8.7□□□□□ -1.02
USP3-213ENST00000559711 SMIM1B2RUZ4 78 aa8.7□□□□□ -1.02
USP3-213ENST00000559711 ZFAND6Q6FIF0 208 aa8.7□□□□□ -1.02
USP3-213ENST00000559711 HIST1H4GQ99525 98 aa8.7□□□□□ -1.02
USP3-213ENST00000559711 HUWE1Q7Z6Z7 4374 aaKnown RBP8.7□□□□□ -1.02
USP3-213ENST00000559711 IGKV3OR2-268A0A0C4DH90 116 aa8.69□□□□□ -1.02
USP3-213ENST00000559711 GCSHP23434 173 aa8.69□□□□□ -1.02
USP3-213ENST00000559711 C10orf126Q8N4M7 172 aa8.69□□□□□ -1.02
USP3-213ENST00000559711 SPANXB1Q9NS25 103 aaPredicted RBP8.69□□□□□ -1.02
USP3-213ENST00000559711 NDUFA12Q9UI09 145 aa8.69□□□□□ -1.02
USP3-213ENST00000559711 TRAV10A0A0B4J240 114 aa8.69□□□□□ -1.02
USP3-213ENST00000559711 A6NDN8 102 aa8.69□□□□□ -1.02
USP3-213ENST00000559711 FXYD2P54710 66 aa8.69□□□□□ -1.02
USP3-213ENST00000559711 A0A0J9YXY3 114 aa8.68□□□□□ -1.02
USP3-213ENST00000559711 SS18Q15532 418 aa8.68□□□□□ -1.02
USP3-213ENST00000559711 LINC00269Q8N2A0 174 aa8.68□□□□□ -1.02
USP3-213ENST00000559711 Q8N3U1 123 aa8.68□□□□□ -1.02
USP3-213ENST00000559711 A0A087WZ39 114 aa8.67□□□□□ -1.02
USP3-213ENST00000559711 K7EP13 123 aa8.67□□□□□ -1.02
USP3-213ENST00000559711 TAX1BP3O14907 124 aa8.67□□□□□ -1.02
USP3-213ENST00000559711 NDUFA1O15239 70 aa8.67□□□□□ -1.02
USP3-213ENST00000559711 SRSF9Q13242 221 aaKnown RBP eCLIP8.67□□□□□ -1.02
USP3-213ENST00000559711 B9D2Q9BPU9 175 aa8.67□□□□□ -1.02
USP3-213ENST00000559711 ANGP03950 147 aaKnown RBP8.66□□□□□ -1.02
USP3-213ENST00000559711 PTTG1IPP53801 180 aa8.65□□□□□ -1.02
USP3-213ENST00000559711 REG3AQ06141 175 aa8.65□□□□□ -1.02
USP3-213ENST00000559711 ESRGQ1W209 222 aa8.65□□□□□ -1.02
USP3-213ENST00000559711 LINC01561Q8N1V8 128 aa8.65□□□□□ -1.02
USP3-213ENST00000559711 IGHV3-30P01768 117 aa8.65□□□□□ -1.03
USP3-213ENST00000559711 IGHV3-30-5P0DP03 117 aa8.65□□□□□ -1.03
USP3-213ENST00000559711 LITAFQ99732 161 aa8.65□□□□□ -1.03
USP3-213ENST00000559711 PRR34Q9NV39 138 aa8.65□□□□□ -1.03
USP3-213ENST00000559711 COX11Q9Y6N1 276 aa8.65□□□□□ -1.03
USP3-213ENST00000559711 TMEM238C9JI98 176 aa8.64□□□□□ -1.03
USP3-213ENST00000559711 XCL1P47992 114 aa8.64□□□□□ -1.03
USP3-213ENST00000559711 CLPSL2Q6UWE3 100 aa8.64□□□□□ -1.03
USP3-213ENST00000559711 CD164L2Q6UWJ8 174 aa8.64□□□□□ -1.03
USP3-213ENST00000559711 C15orf53Q8NAA6 179 aa8.64□□□□□ -1.03
USP3-213ENST00000559711 ZNF625Q96I27 306 aaPredicted RBP8.64□□□□□ -1.03
USP3-213ENST00000559711 DNAH9Q9NYC9 4486 aa8.64□□□□□ -1.03
USP3-213ENST00000559711 A0A1B0GWB2 263 aa8.63□□□□□ -1.03
USP3-213ENST00000559711 TIMM17BO60830 172 aa8.63□□□□□ -1.03
USP3-213ENST00000559711 SMIM13P0DJ93 91 aa8.63□□□□□ -1.03
USP3-213ENST00000559711 Q6ZVH6 145 aa8.63□□□□□ -1.03
USP3-213ENST00000559711 C5orf38Q86SI9 138 aa8.63□□□□□ -1.03
USP3-213ENST00000559711 Q9H8V8 135 aa8.63□□□□□ -1.03
USP3-213ENST00000559711 KRTAP21-3Q3LHN1 58 aa8.62□□□□□ -1.03
USP3-213ENST00000559711 WFDC10BQ8IUB3 73 aa8.62□□□□□ -1.03
USP3-213ENST00000559711 COX7B2Q8TF08 81 aa8.62□□□□□ -1.03
USP3-213ENST00000559711 CHCHD10Q8WYQ3 142 aaPredicted RBP8.62□□□□□ -1.03
USP3-213ENST00000559711 LCE2DQ5TA82 110 aaPredicted RBP8.62□□□□□ -1.03
USP3-213ENST00000559711 NHP2Q9NX24 153 aaKnown RBP8.62□□□□□ -1.03
USP3-213ENST00000559711 KLK12Q9UKR0 248 aa8.62□□□□□ -1.03
USP3-213ENST00000559711 TMEM238LA0A1B0GVL6 79 aa8.61□□□□□ -1.03
USP3-213ENST00000559711 A6NJY4 79 aa8.61□□□□□ -1.03
USP3-213ENST00000559711 HERV-K104P63124 156 aa8.61□□□□□ -1.03
USP3-213ENST00000559711 ADAMTSL4-AS1Q5T5F5 129 aa8.61□□□□□ -1.03
USP3-213ENST00000559711 ENHOQ6UWT2 76 aa8.61□□□□□ -1.03
USP3-213ENST00000559711 SPANXDQ9BXN6 97 aa8.61□□□□□ -1.03
USP3-213ENST00000559711 SPANXCQ9NY87 97 aa8.61□□□□□ -1.03
USP3-213ENST00000559711 STAB2Q8WWQ8 2551 aa8.61□□□□□ -1.03
USP3-213ENST00000559711 DNHD1Q96M86 4753 aa8.6□□□□□ -1.03
USP3-213ENST00000559711 C9orf118A6NHY6 69 aa8.59□□□□□ -1.03
USP3-213ENST00000559711 COX7A2LO14548 114 aa8.59□□□□□ -1.03
USP3-213ENST00000559711 IGHV3-33P01772 117 aa8.59□□□□□ -1.03
USP3-213ENST00000559711 NHLRC4P0CG21 123 aaPredicted RBP8.59□□□□□ -1.03
USP3-213ENST00000559711 FOXI1Q12951 378 aa8.59□□□□□ -1.03
USP3-213ENST00000559711 COL7A1Q02388 2944 aa8.59□□□□□ -1.03
USP3-213ENST00000559711 IGLV10-54A0A075B6I4 117 aa8.59□□□□□ -1.03
USP3-213ENST00000559711 TRAV8-4A0A0B4J246 113 aa8.59□□□□□ -1.03
USP3-213ENST00000559711 K7ERJ3 54 aa8.59□□□□□ -1.03
USP3-213ENST00000559711 CIRBPQ14011 172 aaKnown RBP8.59□□□□□ -1.03
USP3-213ENST00000559711 MIAQ16674 131 aa8.59□□□□□ -1.03
USP3-213ENST00000559711 LINC01556Q5JQF7 62 aa8.59□□□□□ -1.03
USP3-213ENST00000559711 MUSTN1Q8IVN3 82 aa8.59□□□□□ -1.03
USP3-213ENST00000559711 SFTA2Q6UW10 78 aa8.58□□□□□ -1.04
USP3-213ENST00000559711 RAB37Q96AX2 223 aa8.58□□□□□ -1.04
USP3-213ENST00000559711 TOMM7Q9P0U1 55 aa8.58□□□□□ -1.04
USP3-213ENST00000559711 IFITM1P13164 125 aa8.57□□□□□ -1.04
USP3-213ENST00000559711 RPL24P83731 157 aaKnown RBP8.57□□□□□ -1.04
USP3-213ENST00000559711 Q8IZM0 81 aa8.57□□□□□ -1.04
USP3-213ENST00000559711 GAGE12HA6NDE8 117 aa8.56□□□□□ -1.04
USP3-213ENST00000559711 IGLL5B9A064 214 aa8.56□□□□□ -1.04
USP3-213ENST00000559711 CRPP02741 224 aa8.56□□□□□ -1.04
USP3-213ENST00000559711 PRSS2P07478 247 aa8.56□□□□□ -1.04
USP3-213ENST00000559711 DNAH10OSP0CZ25 163 aa8.56□□□□□ -1.04
USP3-213ENST00000559711 UBE2WQ96B02 151 aa8.56□□□□□ -1.04
USP3-213ENST00000559711 A4D1N5 150 aa8.56□□□□□ -1.04
USP3-213ENST00000559711 H3BUT2 72 aa8.56□□□□□ -1.04
USP3-213ENST00000559711 CFC1BP0CG36 223 aa8.56□□□□□ -1.04
USP3-213ENST00000559711 CFC1P0CG37 223 aa8.56□□□□□ -1.04
USP3-213ENST00000559711 KIAA0087Q14695 138 aa8.56□□□□□ -1.04
USP3-213ENST00000559711 C6orf226Q5I0X4 101 aa8.56□□□□□ -1.04
USP3-213ENST00000559711 LINC00588Q9Y4M8 146 aa8.56□□□□□ -1.04
USP3-213ENST00000559711 MEGF8Q7Z7M0 2845 aa8.55□□□□□ -1.04
USP3-213ENST00000559711 MALP21145 153 aa8.55□□□□□ -1.04
USP3-213ENST00000559711 CCL18P55774 89 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms