RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 FABP4P15090 132 aa6.14□□□□□ -1.43
LDLR-210ENST00000559340 LINC00173Q6ZV60 143 aa6.14□□□□□ -1.43
LDLR-210ENST00000559340 FAM19A3Q7Z5A8 133 aa6.14□□□□□ -1.43
LDLR-210ENST00000559340 IGHV1-58A0A0C4DH39 117 aa6.13□□□□□ -1.43
LDLR-210ENST00000559340 TINCRA0A1B0GVN0 87 aa6.13□□□□□ -1.43
LDLR-210ENST00000559340 LINC00242Q5T6M2 205 aa6.13□□□□□ -1.43
LDLR-210ENST00000559340 KRTAP26-1Q6PEX3 210 aa6.13□□□□□ -1.43
LDLR-210ENST00000559340 LINC01561Q8N1V8 128 aa6.13□□□□□ -1.43
LDLR-210ENST00000559340 CHTOPQ9Y3Y2 248 aaKnown RBP6.13□□□□□ -1.43
LDLR-210ENST00000559340 A0A087WTM6 91 aa6.12□□□□□ -1.43
LDLR-210ENST00000559340 H3BRM9 83 aa6.12□□□□□ -1.43
LDLR-210ENST00000559340 AKR1D1P51857 326 aa6.12□□□□□ -1.43
LDLR-210ENST00000559340 FOXI1Q12951 378 aa6.12□□□□□ -1.43
LDLR-210ENST00000559340 ZC2HC1BQ5TFG8 222 aa6.12□□□□□ -1.43
LDLR-210ENST00000559340 IGHV3OR16-9A0A0B4J2B5 98 aa6.11□□□□□ -1.43
LDLR-210ENST00000559340 A0A0J9YXV3 536 aa6.11□□□□□ -1.43
LDLR-210ENST00000559340 USP17L23D6RBM5 183 aa6.11□□□□□ -1.43
LDLR-210ENST00000559340 IGLC3P0DOY3 106 aa6.11□□□□□ -1.43
LDLR-210ENST00000559340 TNP2Q05952 138 aa6.11□□□□□ -1.43
LDLR-210ENST00000559340 C5orf38Q86SI9 138 aa6.11□□□□□ -1.43
LDLR-210ENST00000559340 A0A087WZ39 114 aa6.1□□□□□ -1.43
LDLR-210ENST00000559340 LRCOL1A6NCL2 159 aa6.1□□□□□ -1.43
LDLR-210ENST00000559340 F8VRH5 84 aa6.1□□□□□ -1.43
LDLR-210ENST00000559340 F8WDY8 70 aa6.1□□□□□ -1.43
LDLR-210ENST00000559340 H0Y8G0 127 aa6.1□□□□□ -1.43
LDLR-210ENST00000559340 ZNF561-AS1K7EIQ3 104 aa6.1□□□□□ -1.43
LDLR-210ENST00000559340 PET117Q6UWS5 81 aa6.1□□□□□ -1.43
LDLR-210ENST00000559340 LINC00469Q8N7U9 141 aa6.1□□□□□ -1.43
LDLR-210ENST00000559340 MAPKAPK5-AS1Q8N8E1 139 aa6.1□□□□□ -1.43
LDLR-210ENST00000559340 NTN5Q8WTR8 489 aaPredicted RBP6.1□□□□□ -1.43
LDLR-210ENST00000559340 CHAC1Q9BUX1 264 aa6.1□□□□□ -1.43
LDLR-210ENST00000559340 PGPEP1Q9NXJ5 209 aa6.1□□□□□ -1.43
LDLR-210ENST00000559340 hDV102S1A0JD36 115 aa6.09□□□□□ -1.43
LDLR-210ENST00000559340 C20orf202A1L168 122 aa6.09□□□□□ -1.43
LDLR-210ENST00000559340 SYS1-DBNDD2H3BUS1 97 aa6.09□□□□□ -1.43
LDLR-210ENST00000559340 PLNP26678 52 aa6.09□□□□□ -1.43
LDLR-210ENST00000559340 SNRPEP62304 92 aaKnown RBP6.09□□□□□ -1.43
LDLR-210ENST00000559340 COX6A2Q02221 97 aa6.09□□□□□ -1.43
LDLR-210ENST00000559340 SPATA12Q7Z6I5 190 aa6.09□□□□□ -1.43
LDLR-210ENST00000559340 HIST3H2BBQ8N257 126 aa6.09□□□□□ -1.43
LDLR-210ENST00000559340 Q8N814 137 aa6.09□□□□□ -1.43
LDLR-210ENST00000559340 OR10D4PQ8NGN7 298 aa6.09□□□□□ -1.43
LDLR-210ENST00000559340 IGHV3-64A0A075B6Q5 118 aa6.08□□□□□ -1.44
LDLR-210ENST00000559340 IGLV5-45A0A087WSX0 123 aa6.08□□□□□ -1.44
LDLR-210ENST00000559340 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.08□□□□□ -1.44
LDLR-210ENST00000559340 C5orf52A6NGY3 159 aa6.08□□□□□ -1.44
LDLR-210ENST00000559340 LECT2O14960 151 aa6.08□□□□□ -1.44
LDLR-210ENST00000559340 DPM2O94777 84 aa6.08□□□□□ -1.44
LDLR-210ENST00000559340 PRSS2P07478 247 aa6.08□□□□□ -1.44
LDLR-210ENST00000559340 TMEM170BQ5T4T1 132 aa6.08□□□□□ -1.44
LDLR-210ENST00000559340 CDPF1Q6NVV7 123 aa6.08□□□□□ -1.44
LDLR-210ENST00000559340 ORAOV1Q8WV07 137 aa6.08□□□□□ -1.44
LDLR-210ENST00000559340 MRPL35Q9NZE8 188 aaKnown RBP6.08□□□□□ -1.44
LDLR-210ENST00000559340 CDKN2A-AS1Q9UH64 79 aa6.08□□□□□ -1.44
LDLR-210ENST00000559340 PKIGQ9Y2B9 76 aa6.08□□□□□ -1.44
LDLR-210ENST00000559340 DNAH17Q9UFH2 4485 aa6.07□□□□□ -1.44
LDLR-210ENST00000559340 DNAH2Q9P225 4427 aa6.07□□□□□ -1.44
LDLR-210ENST00000559340 IGLV4-69A0A075B6H9 119 aa6.07□□□□□ -1.44
LDLR-210ENST00000559340 GVQW2A0A096LPI5 108 aaPredicted RBP6.07□□□□□ -1.44
LDLR-210ENST00000559340 KRTDAPP60985 99 aa6.07□□□□□ -1.44
LDLR-210ENST00000559340 ODF1Q14990 250 aa6.07□□□□□ -1.44
LDLR-210ENST00000559340 C15orf56Q8N910 161 aa6.07□□□□□ -1.44
LDLR-210ENST00000559340 C2orf48Q96LS8 159 aa6.07□□□□□ -1.44
LDLR-210ENST00000559340 DNAH10Q8IVF4 4471 aa6.07□□□□□ -1.44
LDLR-210ENST00000559340 IGLV5-52A0A0A0MRZ9 124 aa6.06□□□□□ -1.44
LDLR-210ENST00000559340 C11orf86A6NJI1 115 aa6.06□□□□□ -1.44
LDLR-210ENST00000559340 IGKCP01834 107 aa6.06□□□□□ -1.44
LDLR-210ENST00000559340 C3orf79P0CE67 100 aa6.06□□□□□ -1.44
LDLR-210ENST00000559340 ZNF22P17026 224 aaPredicted RBP6.06□□□□□ -1.44
LDLR-210ENST00000559340 HERVK_113P61574 105 aa6.06□□□□□ -1.44
LDLR-210ENST00000559340 SPAG11BQ08648 103 aa6.06□□□□□ -1.44
LDLR-210ENST00000559340 HIGD2BQ4VC39 106 aa6.06□□□□□ -1.44
LDLR-210ENST00000559340 C6orf226Q5I0X4 101 aa6.06□□□□□ -1.44
LDLR-210ENST00000559340 HIST1H2BLQ99880 126 aa6.06□□□□□ -1.44
LDLR-210ENST00000559340 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.05□□□□□ -1.44
LDLR-210ENST00000559340 CXCL5P42830 114 aa6.05□□□□□ -1.44
LDLR-210ENST00000559340 CKS1BP61024 79 aa6.05□□□□□ -1.44
LDLR-210ENST00000559340 WFDC2Q14508 124 aa6.05□□□□□ -1.44
LDLR-210ENST00000559340 LINC01545Q5VT33 79 aa6.05□□□□□ -1.44
LDLR-210ENST00000559340 Q8IZM0 81 aa6.05□□□□□ -1.44
LDLR-210ENST00000559340 TOMM7Q9P0U1 55 aa6.05□□□□□ -1.44
LDLR-210ENST00000559340 TMA7Q9Y2S6 64 aaKnown RBP6.05□□□□□ -1.44
LDLR-210ENST00000559340 FRAS1Q86XX4 4008 aa6.05□□□□□ -1.44
LDLR-210ENST00000559340 HERC2O95714 4834 aa6.05□□□□□ -1.44
LDLR-210ENST00000559340 NDUFA1O15239 70 aa6.04□□□□□ -1.44
LDLR-210ENST00000559340 SPINK8P0C7L1 97 aa6.04□□□□□ -1.44
LDLR-210ENST00000559340 CNBPP62633 177 aaKnown RBP6.04□□□□□ -1.44
LDLR-210ENST00000559340 SYCNQ0VAF6 134 aa6.04□□□□□ -1.44
LDLR-210ENST00000559340 SFTA2Q6UW10 78 aa6.04□□□□□ -1.44
LDLR-210ENST00000559340 COX7B2Q8TF08 81 aa6.04□□□□□ -1.44
LDLR-210ENST00000559340 CAMK2N2Q96S95 79 aa6.04□□□□□ -1.44
LDLR-210ENST00000559340 A0A1B0GVY2 172 aa6.03□□□□□ -1.44
LDLR-210ENST00000559340 TMEM223A0PJW6 202 aa6.03□□□□□ -1.44
LDLR-210ENST00000559340 SMIM1B2RUZ4 78 aa6.03□□□□□ -1.44
LDLR-210ENST00000559340 RNF151Q2KHN1 245 aa6.03□□□□□ -1.44
LDLR-210ENST00000559340 PLEKHB2Q96CS7 222 aa6.03□□□□□ -1.44
LDLR-210ENST00000559340 CARD19Q96LW7 228 aa6.03□□□□□ -1.44
LDLR-210ENST00000559340 IGLV5-39A0A0G2JS06 123 aa6.02□□□□□ -1.45
LDLR-210ENST00000559340 GCSHP23434 173 aa6.02□□□□□ -1.45
LDLR-210ENST00000559340 KIAA0087Q14695 138 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms