RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 A8MTW9 85 aa8.85□□□□□ -0.99
SHMT2-207ENST00000553837 COX7A2LO14548 114 aa8.85□□□□□ -0.99
SHMT2-207ENST00000553837 PROK1P58294 105 aa8.85□□□□□ -0.99
SHMT2-207ENST00000553837 KHDC1LQ5JSQ8 128 aa8.85□□□□□ -0.99
SHMT2-207ENST00000553837 C4orf3Q8WVX3 66 aa8.85□□□□□ -0.99
SHMT2-207ENST00000553837 CIRBPQ14011 172 aaKnown RBP8.85□□□□□ -0.99
SHMT2-207ENST00000553837 IGHV3-73A0A0B4J1V6 119 aa8.84□□□□□ -0.99
SHMT2-207ENST00000553837 Q9UF83 564 aa8.84□□□□□ -0.99
SHMT2-207ENST00000553837 BAHCC1Q9P281 2608 aa8.84□□□□□ -1
SHMT2-207ENST00000553837 NDUFC2-KCTD14E9PQ53 114 aa8.83□□□□□ -1
SHMT2-207ENST00000553837 OXTP01178 125 aa8.83□□□□□ -1
SHMT2-207ENST00000553837 FAM104AQ969W3 186 aa8.83□□□□□ -1
SHMT2-207ENST00000553837 FLNAP21333 2647 aaKnown RBP8.83□□□□□ -1
SHMT2-207ENST00000553837 SERP2Q8N6R1 65 aa8.83□□□□□ -1
SHMT2-207ENST00000553837 DAND5Q8N907 189 aa8.83□□□□□ -1
SHMT2-207ENST00000553837 MAP6D1Q9H9H5 199 aa8.83□□□□□ -1
SHMT2-207ENST00000553837 ESM1Q9NQ30 184 aa8.83□□□□□ -1
SHMT2-207ENST00000553837 PDZD2O15018 2839 aa8.82□□□□□ -1
SHMT2-207ENST00000553837 A8MZ25 164 aa8.82□□□□□ -1
SHMT2-207ENST00000553837 RPL18AQ02543 176 aaKnown RBP8.82□□□□□ -1
SHMT2-207ENST00000553837 DAZ2Q13117 558 aaKnown RBP8.82□□□□□ -1
SHMT2-207ENST00000553837 DEFB114Q30KQ6 69 aa8.82□□□□□ -1
SHMT2-207ENST00000553837 DAZ4Q86SG3 579 aaKnown RBP8.82□□□□□ -1
SHMT2-207ENST00000553837 C11orf44Q8N8P7 122 aa8.82□□□□□ -1
SHMT2-207ENST00000553837 COPS9Q8WXC6 57 aa8.82□□□□□ -1
SHMT2-207ENST00000553837 DAZ3Q9NR90 486 aaKnown RBP8.82□□□□□ -1
SHMT2-207ENST00000553837 CCDC168Q8NDH2 2452 aa8.82□□□□□ -1
SHMT2-207ENST00000553837 NACAE9PAV3 2078 aa8.82□□□□□ -1
SHMT2-207ENST00000553837 DNAJC9-AS1A6NH13 148 aa8.82□□□□□ -1
SHMT2-207ENST00000553837 BAALC-AS2P0C853 105 aa8.82□□□□□ -1
SHMT2-207ENST00000553837 SEC61GP60059 68 aa8.82□□□□□ -1
SHMT2-207ENST00000553837 Q6ZSN1 163 aa8.82□□□□□ -1
SHMT2-207ENST00000553837 NIPBLQ6KC79 2804 aaeCLIP8.82□□□□□ -1
SHMT2-207ENST00000553837 NDUFA1O15239 70 aa8.81□□□□□ -1
SHMT2-207ENST00000553837 INAFM2P0DMQ5 153 aa8.81□□□□□ -1
SHMT2-207ENST00000553837 DSCR8Q96T75 97 aa8.81□□□□□ -1
SHMT2-207ENST00000553837 UPK3BQ9BT76 320 aa8.81□□□□□ -1
SHMT2-207ENST00000553837 RS1O15537 224 aa8.8□□□□□ -1
SHMT2-207ENST00000553837 LINC00308Q8TCZ7 52 aa8.8□□□□□ -1
SHMT2-207ENST00000553837 C1orf43Q9BWL3 253 aa8.8□□□□□ -1
SHMT2-207ENST00000553837 A0A1W2PRX2 142 aa8.79□□□□□ -1
SHMT2-207ENST00000553837 RNASE13Q5GAN3 156 aaKnown RBP8.79□□□□□ -1
SHMT2-207ENST00000553837 FAM222AQ5U5X8 452 aa8.79□□□□□ -1
SHMT2-207ENST00000553837 DYNLRB2Q8TF09 96 aa8.79□□□□□ -1
SHMT2-207ENST00000553837 PFN2P35080 140 aa8.79□□□□□ -1
SHMT2-207ENST00000553837 TIRAPP58753 221 aa8.79□□□□□ -1
SHMT2-207ENST00000553837 C11orf72Q8NBR9 251 aa8.79□□□□□ -1
SHMT2-207ENST00000553837 ANK3Q12955 4377 aaKnown RBP8.79□□□□□ -1
SHMT2-207ENST00000553837 KRTAP1-1Q07627 177 aa8.78□□□□□ -1
SHMT2-207ENST00000553837 BEAN1Q3B7T3 259 aa8.78□□□□□ -1
SHMT2-207ENST00000553837 ODF3L2Q3SX64 289 aa8.78□□□□□ -1
SHMT2-207ENST00000553837 TMEM86BQ8N661 226 aa8.78□□□□□ -1
SHMT2-207ENST00000553837 WNK1Q9H4A3 2382 aa8.78□□□□□ -1
SHMT2-207ENST00000553837 NDUFC2O95298 119 aa8.78□□□□□ -1
SHMT2-207ENST00000553837 ZNF415Q09FC8 603 aa8.78□□□□□ -1
SHMT2-207ENST00000553837 CYSTM1Q9H1C7 97 aa8.78□□□□□ -1
SHMT2-207ENST00000553837 UBE2D4Q9Y2X8 147 aa8.78□□□□□ -1
SHMT2-207ENST00000553837 V9GYY9 64 aa8.78□□□□□ -1
SHMT2-207ENST00000553837 ACANP16112 2415 aa8.77□□□□□ -1.01
SHMT2-207ENST00000553837 SETD2Q9BYW2 2564 aaPredicted RBP8.76□□□□□ -1.01
SHMT2-207ENST00000553837 CDKN2A-AS1Q9UH64 79 aa8.76□□□□□ -1.01
SHMT2-207ENST00000553837 ITPR2Q14571 2701 aa8.75□□□□□ -1.01
SHMT2-207ENST00000553837 IGLV5-45A0A087WSX0 123 aa8.75□□□□□ -1.01
SHMT2-207ENST00000553837 PRIMA1Q86XR5 153 aa8.75□□□□□ -1.01
SHMT2-207ENST00000553837 CHCHD7Q9BUK0 85 aa8.75□□□□□ -1.01
SHMT2-207ENST00000553837 XCL2Q9UBD3 114 aa8.75□□□□□ -1.01
SHMT2-207ENST00000553837 C22orf24Q9Y442 160 aa8.75□□□□□ -1.01
SHMT2-207ENST00000553837 EPM2AB3EWF7 344 aa8.75□□□□□ -1.01
SHMT2-207ENST00000553837 RPL35AP18077 110 aaKnown RBP8.75□□□□□ -1.01
SHMT2-207ENST00000553837 LINC00336Q6ZUF6 198 aa8.75□□□□□ -1.01
SHMT2-207ENST00000553837 Q9H8V8 135 aa8.75□□□□□ -1.01
SHMT2-207ENST00000553837 SETXQ7Z333 2677 aaKnown RBP8.74□□□□□ -1.01
SHMT2-207ENST00000553837 CCL24O00175 119 aa8.74□□□□□ -1.01
SHMT2-207ENST00000553837 INSP01308 110 aa8.73□□□□□ -1.01
SHMT2-207ENST00000553837 C1orf158Q8N1D5 194 aa8.73□□□□□ -1.01
SHMT2-207ENST00000553837 LINC00467Q9BRT7 94 aa8.73□□□□□ -1.01
SHMT2-207ENST00000553837 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.73□□□□□ -1.01
SHMT2-207ENST00000553837 IGKV2-29A2NJV5 120 aaPredicted RBP8.73□□□□□ -1.01
SHMT2-207ENST00000553837 IGHV3-38A0A0C4DH36 116 aa8.72□□□□□ -1.01
SHMT2-207ENST00000553837 IGLV5-39A0A0G2JS06 123 aa8.72□□□□□ -1.01
SHMT2-207ENST00000553837 MTORP42345 2549 aa8.72□□□□□ -1.01
SHMT2-207ENST00000553837 IGHV3OR16-12A0A075B7B8 117 aa8.72□□□□□ -1.01
SHMT2-207ENST00000553837 A0A0U1RRA0 63 aa8.72□□□□□ -1.01
SHMT2-207ENST00000553837 PIK3CD-AS1Q5SR53 167 aa8.72□□□□□ -1.01
SHMT2-207ENST00000553837 LINC01006Q8NI28 216 aa8.72□□□□□ -1.01
SHMT2-207ENST00000553837 ZNF625Q96I27 306 aaPredicted RBP8.72□□□□□ -1.01
SHMT2-207ENST00000553837 SERP1Q9Y6X1 66 aa8.72□□□□□ -1.01
SHMT2-207ENST00000553837 DNAL4O96015 105 aa8.71□□□□□ -1.01
SHMT2-207ENST00000553837 DGAT2L7PQ6IED9 249 aa8.71□□□□□ -1.01
SHMT2-207ENST00000553837 SOSTDC1Q6X4U4 206 aa8.71□□□□□ -1.01
SHMT2-207ENST00000553837 FAM218AQ96MZ4 157 aa8.71□□□□□ -1.01
SHMT2-207ENST00000553837 OVOL2Q9BRP0 275 aa8.71□□□□□ -1.01
SHMT2-207ENST00000553837 IGHV3-53P01767 116 aa8.71□□□□□ -1.02
SHMT2-207ENST00000553837 PF4P02776 101 aa8.71□□□□□ -1.02
SHMT2-207ENST00000553837 Q6JHZ5 121 aa8.71□□□□□ -1.02
SHMT2-207ENST00000553837 STHQ8IWL8 128 aa8.7□□□□□ -1.02
SHMT2-207ENST00000553837 IL17DQ8TAD2 202 aa8.7□□□□□ -1.02
SHMT2-207ENST00000553837 JMJD1CQ15652 2540 aa8.7□□□□□ -1.02
SHMT2-207ENST00000553837 TRAV13-2A0A0B4J235 113 aa8.69□□□□□ -1.02
SHMT2-207ENST00000553837 RPL28P46779 137 aaKnown RBP8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 205.6 ms