RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 Q6ZSA8 131 aa9.12□□□□□ -0.95
PTCH1-226ENST00000553011 SCGB3A1Q96QR1 104 aa9.12□□□□□ -0.95
PTCH1-226ENST00000553011 TIMM17AQ99595 171 aa9.12□□□□□ -0.95
PTCH1-226ENST00000553011 VCX2Q9H322 139 aa9.12□□□□□ -0.95
PTCH1-226ENST00000553011 IGHV3OR16-9A0A0B4J2B5 98 aa9.11□□□□□ -0.95
PTCH1-226ENST00000553011 COLCA2A8K830 154 aa9.11□□□□□ -0.95
PTCH1-226ENST00000553011 SCO1O75880 301 aa9.11□□□□□ -0.95
PTCH1-226ENST00000553011 LINC00614P0C842 121 aa9.11□□□□□ -0.95
PTCH1-226ENST00000553011 UBE2D1P51668 147 aa9.11□□□□□ -0.95
PTCH1-226ENST00000553011 LINC00242Q5T6M2 205 aa9.11□□□□□ -0.95
PTCH1-226ENST00000553011 ERASQ7Z444 233 aa9.11□□□□□ -0.95
PTCH1-226ENST00000553011 C2orf88Q9BSF0 95 aa9.11□□□□□ -0.95
PTCH1-226ENST00000553011 A0A096LNJ9 63 aa9.1□□□□□ -0.95
PTCH1-226ENST00000553011 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.1□□□□□ -0.95
PTCH1-226ENST00000553011 TRGC2P03986 189 aa9.1□□□□□ -0.95
PTCH1-226ENST00000553011 COX6A2Q02221 97 aa9.1□□□□□ -0.95
PTCH1-226ENST00000553011 PMCHL1Q16048 86 aa9.09□□□□□ -0.95
PTCH1-226ENST00000553011 PAPPA-AS1Q5QFB9 102 aa9.09□□□□□ -0.95
PTCH1-226ENST00000553011 KRTAP3-3Q9BYR6 98 aa9.09□□□□□ -0.95
PTCH1-226ENST00000553011 KRTAP3-2Q9BYR7 98 aa9.09□□□□□ -0.95
PTCH1-226ENST00000553011 LINC01549A6NIU2 74 aa9.08□□□□□ -0.96
PTCH1-226ENST00000553011 ZNF561-AS1K7EIQ3 104 aa9.08□□□□□ -0.96
PTCH1-226ENST00000553011 RAB5BP61020 215 aa9.08□□□□□ -0.96
PTCH1-226ENST00000553011 SDIM1Q6ZPB5 146 aa9.08□□□□□ -0.96
PTCH1-226ENST00000553011 IGLV4-69A0A075B6H9 119 aa9.07□□□□□ -0.96
PTCH1-226ENST00000553011 IGHV3-64A0A075B6Q5 118 aa9.07□□□□□ -0.96
PTCH1-226ENST00000553011 APOMO95445 188 aa9.07□□□□□ -0.96
PTCH1-226ENST00000553011 HBDP02042 147 aa9.07□□□□□ -0.96
PTCH1-226ENST00000553011 A0A087WZ39 114 aa9.06□□□□□ -0.96
PTCH1-226ENST00000553011 A0A0J9YXV3 536 aa9.06□□□□□ -0.96
PTCH1-226ENST00000553011 SMR3BP02814 79 aaPredicted RBP9.06□□□□□ -0.96
PTCH1-226ENST00000553011 SPAG11BQ08648 103 aa9.06□□□□□ -0.96
PTCH1-226ENST00000553011 SCXQ7RTU7 201 aa9.06□□□□□ -0.96
PTCH1-226ENST00000553011 FAM19A3Q7Z5A8 133 aa9.06□□□□□ -0.96
PTCH1-226ENST00000553011 Q8N1X5 172 aa9.06□□□□□ -0.96
PTCH1-226ENST00000553011 ORAOV1Q8WV07 137 aa9.06□□□□□ -0.96
PTCH1-226ENST00000553011 KRTAP4-5Q9BYR2 181 aa9.06□□□□□ -0.96
PTCH1-226ENST00000553011 PANO1I0J062 215 aa9.05□□□□□ -0.96
PTCH1-226ENST00000553011 SYCNQ0VAF6 134 aa9.05□□□□□ -0.96
PTCH1-226ENST00000553011 CARD19Q96LW7 228 aa9.05□□□□□ -0.96
PTCH1-226ENST00000553011 CHAC1Q9BUX1 264 aa9.05□□□□□ -0.96
PTCH1-226ENST00000553011 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.05□□□□□ -0.96
PTCH1-226ENST00000553011 FAT1Q14517 4588 aa9.04□□□□□ -0.96
PTCH1-226ENST00000553011 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.04□□□□□ -0.96
PTCH1-226ENST00000553011 PDZD11Q5EBL8 140 aa9.04□□□□□ -0.96
PTCH1-226ENST00000553011 Q6ZRU5 148 aa9.04□□□□□ -0.96
PTCH1-226ENST00000553011 OR10D4PQ8NGN7 298 aa9.04□□□□□ -0.96
PTCH1-226ENST00000553011 CHCHD1Q96BP2 118 aaKnown RBP9.04□□□□□ -0.96
PTCH1-226ENST00000553011 CAMK2N2Q96S95 79 aa9.04□□□□□ -0.96
PTCH1-226ENST00000553011 CST9LQ9H4G1 147 aa9.04□□□□□ -0.96
PTCH1-226ENST00000553011 CHTF8P0CG12 524 aa9.03□□□□□ -0.96
PTCH1-226ENST00000553011 PMVKQ15126 192 aa9.03□□□□□ -0.96
PTCH1-226ENST00000553011 BAGE3Q86Y29 109 aa9.03□□□□□ -0.96
PTCH1-226ENST00000553011 CIRBP-AS1Q8TBR5 109 aa9.03□□□□□ -0.96
PTCH1-226ENST00000553011 C2orf48Q96LS8 159 aa9.03□□□□□ -0.96
PTCH1-226ENST00000553011 GEMIN7Q9H840 131 aaKnown RBP9.03□□□□□ -0.96
PTCH1-226ENST00000553011 HERVK_113P63121 156 aa9.02□□□□□ -0.97
PTCH1-226ENST00000553011 SEC11AP67812 179 aa9.02□□□□□ -0.97
PTCH1-226ENST00000553011 CDKN2A-AS1Q9UH64 79 aa9.02□□□□□ -0.97
PTCH1-226ENST00000553011 NDUFA6P56556 154 aa9.01□□□□□ -0.97
PTCH1-226ENST00000553011 LINC00310P59036 64 aa9.01□□□□□ -0.97
PTCH1-226ENST00000553011 KIAA0087Q14695 138 aa9.01□□□□□ -0.97
PTCH1-226ENST00000553011 LINC01561Q8N1V8 128 aa9.01□□□□□ -0.97
PTCH1-226ENST00000553011 IGKV2-24A0A0C4DH68 120 aa9□□□□□ -0.97
PTCH1-226ENST00000553011 TINCRA0A1B0GVN0 87 aa9□□□□□ -0.97
PTCH1-226ENST00000553011 HSBP1O75506 76 aa9□□□□□ -0.97
PTCH1-226ENST00000553011 SERF1AO75920 110 aa9□□□□□ -0.97
PTCH1-226ENST00000553011 ATP5LO75964 103 aa9□□□□□ -0.97
PTCH1-226ENST00000553011 CIRBPQ14011 172 aaKnown RBP9□□□□□ -0.97
PTCH1-226ENST00000553011 FAM19A2Q8N3H0 131 aa9□□□□□ -0.97
PTCH1-226ENST00000553011 LINC00469Q8N7U9 141 aa9□□□□□ -0.97
PTCH1-226ENST00000553011 A0A096LNI7 61 aa8.99□□□□□ -0.97
PTCH1-226ENST00000553011 EPM2AB3EWF7 344 aa8.99□□□□□ -0.97
PTCH1-226ENST00000553011 C10orf25Q5T742 122 aa8.99□□□□□ -0.97
PTCH1-226ENST00000553011 Q5VSD8 79 aa8.99□□□□□ -0.97
PTCH1-226ENST00000553011 UNQ6190/PRO20217Q6UXQ8 127 aa8.99□□□□□ -0.97
PTCH1-226ENST00000553011 SPACA4Q8TDM5 124 aa8.99□□□□□ -0.97
PTCH1-226ENST00000553011 ABCA13Q86UQ4 5058 aa8.98□□□□□ -0.97
PTCH1-226ENST00000553011 IGLV5-45A0A087WSX0 123 aa8.98□□□□□ -0.97
PTCH1-226ENST00000553011 NDUFA1O15239 70 aa8.98□□□□□ -0.97
PTCH1-226ENST00000553011 NUPR1O60356 82 aa8.98□□□□□ -0.97
PTCH1-226ENST00000553011 PACRGQ96M98 296 aaPredicted RBP8.98□□□□□ -0.97
PTCH1-226ENST00000553011 TOMM7Q9P0U1 55 aa8.98□□□□□ -0.97
PTCH1-226ENST00000553011 SRRM2Q9UQ35 2752 aaKnown RBP8.98□□□□□ -0.97
PTCH1-226ENST00000553011 F8WDY8 70 aa8.97□□□□□ -0.97
PTCH1-226ENST00000553011 ATP6V1G1O75348 118 aa8.97□□□□□ -0.97
PTCH1-226ENST00000553011 IGLC3P0DOY3 106 aa8.97□□□□□ -0.97
PTCH1-226ENST00000553011 MAJINQ3KP22 176 aa8.97□□□□□ -0.97
PTCH1-226ENST00000553011 C2orf82Q6UX34 121 aa8.97□□□□□ -0.97
PTCH1-226ENST00000553011 LINC00528Q8N1L1 170 aa8.97□□□□□ -0.97
PTCH1-226ENST00000553011 IFI27L1Q96BM0 104 aa8.97□□□□□ -0.97
PTCH1-226ENST00000553011 DPH3Q96FX2 82 aa8.97□□□□□ -0.97
PTCH1-226ENST00000553011 MRPL35Q9NZE8 188 aaKnown RBP8.97□□□□□ -0.97
PTCH1-226ENST00000553011 A0A087WYN8 130 aa8.96□□□□□ -0.98
PTCH1-226ENST00000553011 LOC107984640A0A0U1RRK4 108 aa8.96□□□□□ -0.98
PTCH1-226ENST00000553011 SMIM1B2RUZ4 78 aa8.96□□□□□ -0.98
PTCH1-226ENST00000553011 PRSS2P07478 247 aa8.96□□□□□ -0.98
PTCH1-226ENST00000553011 C6orf48Q9UBA6 75 aa8.96□□□□□ -0.98
PTCH1-226ENST00000553011 FAM229AH3BQW9 127 aa8.95□□□□□ -0.98
PTCH1-226ENST00000553011 HIST1H2BKO60814 126 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms