RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 PRELID3AQ96N28 172 aa7.68□□□□□ -1.18
CKAP4-202ENST00000552828 VAMP8Q9BV40 100 aa7.68□□□□□ -1.18
CKAP4-202ENST00000552828 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.67□□□□□ -1.18
CKAP4-202ENST00000552828 IGKV2-29A2NJV5 120 aaPredicted RBP7.67□□□□□ -1.18
CKAP4-202ENST00000552828 NPYP01303 97 aa7.67□□□□□ -1.18
CKAP4-202ENST00000552828 MIAQ16674 131 aa7.67□□□□□ -1.18
CKAP4-202ENST00000552828 RNASEKQ6P5S7 137 aaKnown RBP7.67□□□□□ -1.18
CKAP4-202ENST00000552828 C20orf203Q8NBC4 194 aa7.67□□□□□ -1.18
CKAP4-202ENST00000552828 C1orf43Q9BWL3 253 aa7.67□□□□□ -1.18
CKAP4-202ENST00000552828 PRR34Q9NV39 138 aa7.67□□□□□ -1.18
CKAP4-202ENST00000552828 IGLV4-60A0A075B6I1 120 aa7.66□□□□□ -1.18
CKAP4-202ENST00000552828 C20orf202A1L168 122 aa7.66□□□□□ -1.18
CKAP4-202ENST00000552828 TCAPO15273 167 aa7.66□□□□□ -1.18
CKAP4-202ENST00000552828 FGF6P10767 208 aa7.66□□□□□ -1.18
CKAP4-202ENST00000552828 REG3AQ06141 175 aa7.66□□□□□ -1.18
CKAP4-202ENST00000552828 PMCHL1Q16048 86 aa7.66□□□□□ -1.18
CKAP4-202ENST00000552828 CHCHD1Q96BP2 118 aaKnown RBP7.66□□□□□ -1.18
CKAP4-202ENST00000552828 SMIM2Q9BVW6 85 aa7.66□□□□□ -1.18
CKAP4-202ENST00000552828 PLA2G2DQ9UNK4 145 aa7.66□□□□□ -1.18
CKAP4-202ENST00000552828 LAMTOR2Q9Y2Q5 125 aa7.66□□□□□ -1.18
CKAP4-202ENST00000552828 A0A1B0GV90 55 aa7.65□□□□□ -1.18
CKAP4-202ENST00000552828 HSBP1O75506 76 aa7.65□□□□□ -1.18
CKAP4-202ENST00000552828 C3orf79P0CE67 100 aa7.65□□□□□ -1.18
CKAP4-202ENST00000552828 ZNF25P17030 456 aaPredicted RBP7.65□□□□□ -1.18
CKAP4-202ENST00000552828 KRTDAPP60985 99 aa7.65□□□□□ -1.18
CKAP4-202ENST00000552828 C4orf48Q5BLP8 95 aa7.65□□□□□ -1.18
CKAP4-202ENST00000552828 CLPSL2Q6UWE3 100 aa7.65□□□□□ -1.18
CKAP4-202ENST00000552828 TMEM101Q96IK0 257 aa7.65□□□□□ -1.18
CKAP4-202ENST00000552828 SNHG12Q9BXW3 62 aa7.65□□□□□ -1.18
CKAP4-202ENST00000552828 TRAV8-4A0A0B4J246 113 aa7.64□□□□□ -1.19
CKAP4-202ENST00000552828 RPL37AP61513 92 aaKnown RBP7.64□□□□□ -1.19
CKAP4-202ENST00000552828 SMAGPQ0VAQ4 97 aa7.64□□□□□ -1.19
CKAP4-202ENST00000552828 OR5A1Q8NGJ0 315 aa7.64□□□□□ -1.19
CKAP4-202ENST00000552828 MAP1LC3AQ9H492 121 aa7.64□□□□□ -1.19
CKAP4-202ENST00000552828 PRSS47A8MTI9 375 aa7.63□□□□□ -1.19
CKAP4-202ENST00000552828 HNRNPA3P51991 378 aaKnown RBP7.63□□□□□ -1.19
CKAP4-202ENST00000552828 DGAT2L7PQ6IED9 249 aa7.63□□□□□ -1.19
CKAP4-202ENST00000552828 LOC389332A0A1B0GUA5 103 aa7.62□□□□□ -1.19
CKAP4-202ENST00000552828 USP17L23D6RBM5 183 aa7.62□□□□□ -1.19
CKAP4-202ENST00000552828 PRSS1P07477 247 aa7.62□□□□□ -1.19
CKAP4-202ENST00000552828 C9orf163Q8N9P6 203 aa7.62□□□□□ -1.19
CKAP4-202ENST00000552828 UQCR10Q9UDW1 63 aa7.62□□□□□ -1.19
CKAP4-202ENST00000552828 PAM16Q9Y3D7 125 aa7.62□□□□□ -1.19
CKAP4-202ENST00000552828 IGLV10-54A0A075B6I4 117 aa7.61□□□□□ -1.19
CKAP4-202ENST00000552828 IGKV3OR2-268A0A0C4DH90 116 aa7.61□□□□□ -1.19
CKAP4-202ENST00000552828 IGLC3P0DOY3 106 aa7.61□□□□□ -1.19
CKAP4-202ENST00000552828 SPATA45Q537H7 98 aa7.61□□□□□ -1.19
CKAP4-202ENST00000552828 FAM19A2Q8N3H0 131 aa7.61□□□□□ -1.19
CKAP4-202ENST00000552828 URB1-AS1Q96HZ7 61 aa7.61□□□□□ -1.19
CKAP4-202ENST00000552828 CSDC2Q9Y534 153 aaKnown RBP7.61□□□□□ -1.19
CKAP4-202ENST00000552828 MT1HL1P0DM35 61 aa7.6□□□□□ -1.19
CKAP4-202ENST00000552828 KRTAP26-1Q6PEX3 210 aa7.6□□□□□ -1.19
CKAP4-202ENST00000552828 SDIM1Q6ZPB5 146 aa7.6□□□□□ -1.19
CKAP4-202ENST00000552828 Q8N8P6 123 aa7.6□□□□□ -1.19
CKAP4-202ENST00000552828 TIMM21Q9BVV7 248 aa7.6□□□□□ -1.19
CKAP4-202ENST00000552828 CDC42SE2Q9NRR3 84 aa7.6□□□□□ -1.19
CKAP4-202ENST00000552828 UBE2D4Q9Y2X8 147 aa7.6□□□□□ -1.19
CKAP4-202ENST00000552828 K7EMI3 77 aa7.59□□□□□ -1.19
CKAP4-202ENST00000552828 LINC00614P0C842 121 aa7.59□□□□□ -1.19
CKAP4-202ENST00000552828 NXT2Q9NPJ8 142 aaKnown RBP7.59□□□□□ -1.19
CKAP4-202ENST00000552828 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.59□□□□□ -1.19
CKAP4-202ENST00000552828 PANO1I0J062 215 aa7.58□□□□□ -1.2
CKAP4-202ENST00000552828 RPL39P62891 51 aaKnown RBP7.58□□□□□ -1.2
CKAP4-202ENST00000552828 CIRBPQ14011 172 aaKnown RBP7.58□□□□□ -1.2
CKAP4-202ENST00000552828 PET117Q6UWS5 81 aa7.58□□□□□ -1.2
CKAP4-202ENST00000552828 CHCHD10Q8WYQ3 142 aaPredicted RBP7.58□□□□□ -1.2
CKAP4-202ENST00000552828 SPANXA1Q9NS26 97 aa7.58□□□□□ -1.2
CKAP4-202ENST00000552828 TNXBP22105 4242 aa7.57□□□□□ -1.2
CKAP4-202ENST00000552828 GAGE12HA6NDE8 117 aa7.57□□□□□ -1.2
CKAP4-202ENST00000552828 LEPROTL1O95214 131 aa7.57□□□□□ -1.2
CKAP4-202ENST00000552828 IFI27P40305 119 aaPredicted RBP7.57□□□□□ -1.2
CKAP4-202ENST00000552828 CNBPP62633 177 aaKnown RBP7.57□□□□□ -1.2
CKAP4-202ENST00000552828 SS18Q15532 418 aa7.57□□□□□ -1.2
CKAP4-202ENST00000552828 ORMDL2Q53FV1 153 aa7.57□□□□□ -1.2
CKAP4-202ENST00000552828 COL5A1-AS1Q5SY13 56 aa7.57□□□□□ -1.2
CKAP4-202ENST00000552828 Q6ZRU5 148 aa7.57□□□□□ -1.2
CKAP4-202ENST00000552828 PRSS3P2Q8NHM4 247 aa7.57□□□□□ -1.2
CKAP4-202ENST00000552828 HSPB8Q9UJY1 196 aa7.57□□□□□ -1.2
CKAP4-202ENST00000552828 RNF213Q63HN8 5207 aa7.56□□□□□ -1.2
CKAP4-202ENST00000552828 LINC00959A0A1B0GUT2 108 aa7.56□□□□□ -1.2
CKAP4-202ENST00000552828 SYS1-DBNDD2H3BUS1 97 aa7.56□□□□□ -1.2
CKAP4-202ENST00000552828 CCL25O15444 150 aa7.56□□□□□ -1.2
CKAP4-202ENST00000552828 G0S2P27469 103 aa7.56□□□□□ -1.2
CKAP4-202ENST00000552828 LRP2P98164 4655 aa7.55□□□□□ -1.2
CKAP4-202ENST00000552828 XCL1P47992 114 aa7.55□□□□□ -1.2
CKAP4-202ENST00000552828 MRPS36P82909 103 aaKnown RBP7.55□□□□□ -1.2
CKAP4-202ENST00000552828 RNASE13Q5GAN3 156 aaKnown RBP7.55□□□□□ -1.2
CKAP4-202ENST00000552828 CFAP161Q6P656 301 aa7.55□□□□□ -1.2
CKAP4-202ENST00000552828 Q6ZUT4 128 aa7.55□□□□□ -1.2
CKAP4-202ENST00000552828 MAP1LC3CQ9BXW4 147 aa7.55□□□□□ -1.2
CKAP4-202ENST00000552828 CYSLTR1Q9Y271 337 aa7.55□□□□□ -1.2
CKAP4-202ENST00000552828 PYGO1Q9Y3Y4 419 aa7.55□□□□□ -1.2
CKAP4-202ENST00000552828 C2orf66Q6UXQ4 117 aa7.54□□□□□ -1.2
CKAP4-202ENST00000552828 Q6ZN92 141 aa7.54□□□□□ -1.2
CKAP4-202ENST00000552828 AP5S1Q9NUS5 200 aa7.54□□□□□ -1.2
CKAP4-202ENST00000552828 TRAV13-1A0A0B4J241 112 aa7.53□□□□□ -1.2
CKAP4-202ENST00000552828 A6NJY4 79 aa7.53□□□□□ -1.2
CKAP4-202ENST00000552828 FOXI1Q12951 378 aa7.53□□□□□ -1.2
CKAP4-202ENST00000552828 LINC01545Q5VT33 79 aa7.53□□□□□ -1.2
CKAP4-202ENST00000552828 CD164L2Q6UWJ8 174 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms