RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 IGLV4-3A0A075B6K6 122 aa8.07□□□□□ -1.12
VPS33A-207ENST00000542790 LINC01549A6NIU2 74 aa8.07□□□□□ -1.12
VPS33A-207ENST00000542790 IFITM10A6NMD0 228 aa8.07□□□□□ -1.12
VPS33A-207ENST00000542790 Q6ZN92 141 aa8.07□□□□□ -1.12
VPS33A-207ENST00000542790 FA2HQ7L5A8 372 aa8.07□□□□□ -1.12
VPS33A-207ENST00000542790 TMEM141Q96I45 108 aa8.07□□□□□ -1.12
VPS33A-207ENST00000542790 GVQW2A0A096LPI5 108 aaPredicted RBP8.06□□□□□ -1.12
VPS33A-207ENST00000542790 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.06□□□□□ -1.12
VPS33A-207ENST00000542790 IGHV1-58A0A0C4DH39 117 aa8.06□□□□□ -1.12
VPS33A-207ENST00000542790 IGIPA6NJ69 53 aa8.06□□□□□ -1.12
VPS33A-207ENST00000542790 COX7A2LO14548 114 aa8.06□□□□□ -1.12
VPS33A-207ENST00000542790 CNBPP62633 177 aaKnown RBP8.06□□□□□ -1.12
VPS33A-207ENST00000542790 PAPPA-AS1Q5QFB9 102 aa8.06□□□□□ -1.12
VPS33A-207ENST00000542790 TEX43Q6ZNM6 134 aa8.06□□□□□ -1.12
VPS33A-207ENST00000542790 C15orf56Q8N910 161 aa8.06□□□□□ -1.12
VPS33A-207ENST00000542790 TOMM6Q96B49 74 aa8.06□□□□□ -1.12
VPS33A-207ENST00000542790 VCX2Q9H322 139 aa8.06□□□□□ -1.12
VPS33A-207ENST00000542790 KRTAP9-7A8MTY7 169 aa8.05□□□□□ -1.12
VPS33A-207ENST00000542790 MALP21145 153 aa8.05□□□□□ -1.12
VPS33A-207ENST00000542790 LINC01620Q4KN68 170 aa8.05□□□□□ -1.12
VPS33A-207ENST00000542790 C9orf163Q8N9P6 203 aa8.05□□□□□ -1.12
VPS33A-207ENST00000542790 C18orf32Q8TCD1 76 aa8.05□□□□□ -1.12
VPS33A-207ENST00000542790 TIMM17AQ99595 171 aa8.05□□□□□ -1.12
VPS33A-207ENST00000542790 C2orf88Q9BSF0 95 aa8.05□□□□□ -1.12
VPS33A-207ENST00000542790 LRP1BQ9NZR2 4599 aa8.05□□□□□ -1.12
VPS33A-207ENST00000542790 LINC00614P0C842 121 aa8.04□□□□□ -1.12
VPS33A-207ENST00000542790 XGP55808 180 aa8.04□□□□□ -1.12
VPS33A-207ENST00000542790 RAB5BP61020 215 aa8.04□□□□□ -1.12
VPS33A-207ENST00000542790 HIGD2BQ4VC39 106 aa8.04□□□□□ -1.12
VPS33A-207ENST00000542790 ERASQ7Z444 233 aa8.04□□□□□ -1.12
VPS33A-207ENST00000542790 SCGB3A1Q96QR1 104 aa8.04□□□□□ -1.12
VPS33A-207ENST00000542790 ZNF561-AS1K7EIQ3 104 aa8.03□□□□□ -1.12
VPS33A-207ENST00000542790 C5orf38Q86SI9 138 aa8.03□□□□□ -1.12
VPS33A-207ENST00000542790 AMELXQ99217 191 aa8.03□□□□□ -1.12
VPS33A-207ENST00000542790 FAM30AQ9NZY2 134 aa8.03□□□□□ -1.12
VPS33A-207ENST00000542790 DNAH5Q8TE73 4624 aa8.02□□□□□ -1.12
VPS33A-207ENST00000542790 IGHV3OR16-9A0A0B4J2B5 98 aa8.02□□□□□ -1.13
VPS33A-207ENST00000542790 APOMO95445 188 aa8.02□□□□□ -1.13
VPS33A-207ENST00000542790 SLPIP03973 132 aa8.02□□□□□ -1.13
VPS33A-207ENST00000542790 LINC00242Q5T6M2 205 aa8.02□□□□□ -1.13
VPS33A-207ENST00000542790 Q6ZSA8 131 aa8.02□□□□□ -1.13
VPS33A-207ENST00000542790 IGHV3-64A0A075B6Q5 118 aa8.01□□□□□ -1.13
VPS33A-207ENST00000542790 UBE2D1P51668 147 aa8.01□□□□□ -1.13
VPS33A-207ENST00000542790 COLCA2A8K830 154 aa8□□□□□ -1.13
VPS33A-207ENST00000542790 SEC11AP67812 179 aa8□□□□□ -1.13
VPS33A-207ENST00000542790 ZC2HC1BQ5TFG8 222 aa8□□□□□ -1.13
VPS33A-207ENST00000542790 SDIM1Q6ZPB5 146 aa8□□□□□ -1.13
VPS33A-207ENST00000542790 LINC00173Q6ZV60 143 aa8□□□□□ -1.13
VPS33A-207ENST00000542790 URB1-AS1Q96HZ7 61 aa8□□□□□ -1.13
VPS33A-207ENST00000542790 KRTAP4-7Q9BYR0 210 aa8□□□□□ -1.13
VPS33A-207ENST00000542790 A0A087WZ39 114 aa7.99□□□□□ -1.13
VPS33A-207ENST00000542790 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.99□□□□□ -1.13
VPS33A-207ENST00000542790 TRGC2P03986 189 aa7.99□□□□□ -1.13
VPS33A-207ENST00000542790 FAM19A3Q7Z5A8 133 aa7.99□□□□□ -1.13
VPS33A-207ENST00000542790 Q8N1X5 172 aa7.99□□□□□ -1.13
VPS33A-207ENST00000542790 OR10D4PQ8NGN7 298 aa7.99□□□□□ -1.13
VPS33A-207ENST00000542790 HERC2O95714 4834 aa7.99□□□□□ -1.13
VPS33A-207ENST00000542790 IGLV4-69A0A075B6H9 119 aa7.98□□□□□ -1.13
VPS33A-207ENST00000542790 HBDP02042 147 aa7.98□□□□□ -1.13
VPS33A-207ENST00000542790 HERVK_113P63121 156 aa7.98□□□□□ -1.13
VPS33A-207ENST00000542790 COX6A2Q02221 97 aa7.98□□□□□ -1.13
VPS33A-207ENST00000542790 SYCNQ0VAF6 134 aa7.98□□□□□ -1.13
VPS33A-207ENST00000542790 CHCHD1Q96BP2 118 aaKnown RBP7.98□□□□□ -1.13
VPS33A-207ENST00000542790 LINC00526Q96FQ7 95 aa7.98□□□□□ -1.13
VPS33A-207ENST00000542790 CHAC1Q9BUX1 264 aa7.98□□□□□ -1.13
VPS33A-207ENST00000542790 RYR1P21817 5038 aa7.98□□□□□ -1.13
VPS33A-207ENST00000542790 A0A096LNJ9 63 aa7.97□□□□□ -1.13
VPS33A-207ENST00000542790 HAMPP81172 84 aa7.97□□□□□ -1.13
VPS33A-207ENST00000542790 SPAG11BQ08648 103 aa7.97□□□□□ -1.13
VPS33A-207ENST00000542790 LINC01561Q8N1V8 128 aa7.97□□□□□ -1.13
VPS33A-207ENST00000542790 ORAOV1Q8WV07 137 aa7.97□□□□□ -1.13
VPS33A-207ENST00000542790 C2orf48Q96LS8 159 aa7.97□□□□□ -1.13
VPS33A-207ENST00000542790 CARD19Q96LW7 228 aa7.97□□□□□ -1.13
VPS33A-207ENST00000542790 CST9LQ9H4G1 147 aa7.97□□□□□ -1.13
VPS33A-207ENST00000542790 GEMIN7Q9H840 131 aaKnown RBP7.97□□□□□ -1.13
VPS33A-207ENST00000542790 PKIGQ9Y2B9 76 aa7.97□□□□□ -1.13
VPS33A-207ENST00000542790 F8WDY8 70 aa7.96□□□□□ -1.14
VPS33A-207ENST00000542790 PMVKQ15126 192 aa7.96□□□□□ -1.14
VPS33A-207ENST00000542790 PMCHL1Q16048 86 aa7.96□□□□□ -1.14
VPS33A-207ENST00000542790 SCXQ7RTU7 201 aa7.96□□□□□ -1.14
VPS33A-207ENST00000542790 BAGE3Q86Y29 109 aa7.96□□□□□ -1.14
VPS33A-207ENST00000542790 CAMK2N2Q96S95 79 aa7.96□□□□□ -1.14
VPS33A-207ENST00000542790 APOBP04114 4563 aaKnown RBP7.95□□□□□ -1.14
VPS33A-207ENST00000542790 A0A0J9YXV3 536 aa7.95□□□□□ -1.14
VPS33A-207ENST00000542790 SCO1O75880 301 aa7.95□□□□□ -1.14
VPS33A-207ENST00000542790 ATP5LO75964 103 aa7.95□□□□□ -1.14
VPS33A-207ENST00000542790 SMR3BP02814 79 aaPredicted RBP7.95□□□□□ -1.14
VPS33A-207ENST00000542790 PDZD11Q5EBL8 140 aa7.95□□□□□ -1.14
VPS33A-207ENST00000542790 CIRBP-AS1Q8TBR5 109 aa7.95□□□□□ -1.14
VPS33A-207ENST00000542790 DPH3Q96FX2 82 aa7.95□□□□□ -1.14
VPS33A-207ENST00000542790 TINCRA0A1B0GVN0 87 aa7.94□□□□□ -1.14
VPS33A-207ENST00000542790 EPM2AB3EWF7 344 aa7.94□□□□□ -1.14
VPS33A-207ENST00000542790 HSBP1O75506 76 aa7.94□□□□□ -1.14
VPS33A-207ENST00000542790 PLA2G1BP04054 148 aaKnown RBP7.94□□□□□ -1.14
VPS33A-207ENST00000542790 CDKN2A-AS1Q9UH64 79 aa7.94□□□□□ -1.14
VPS33A-207ENST00000542790 NDUFA6P56556 154 aa7.93□□□□□ -1.14
VPS33A-207ENST00000542790 CIRBPQ14011 172 aaKnown RBP7.93□□□□□ -1.14
VPS33A-207ENST00000542790 Q6ZRU5 148 aa7.93□□□□□ -1.14
VPS33A-207ENST00000542790 PACRGQ96M98 296 aaPredicted RBP7.93□□□□□ -1.14
VPS33A-207ENST00000542790 KRTAP17-1Q9BYP8 105 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms