RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.83□□□□□ -1.48
PDLIM5-221ENST00000542407 A0A0B4J2C4 111 aa5.83□□□□□ -1.48
PDLIM5-221ENST00000542407 TIMM17BO60830 172 aa5.83□□□□□ -1.48
PDLIM5-221ENST00000542407 COX6CP09669 75 aa5.83□□□□□ -1.48
PDLIM5-221ENST00000542407 COPS9Q8WXC6 57 aa5.83□□□□□ -1.48
PDLIM5-221ENST00000542407 RHPN1-AS1Q9BWJ2 59 aa5.83□□□□□ -1.48
PDLIM5-221ENST00000542407 CREBBPQ92793 2442 aa5.83□□□□□ -1.48
PDLIM5-221ENST00000542407 C8orf87E5RJ46 101 aa5.83□□□□□ -1.48
PDLIM5-221ENST00000542407 F5H697 171 aa5.83□□□□□ -1.48
PDLIM5-221ENST00000542407 C11orf68Q9H3H3 251 aaKnown RBP5.83□□□□□ -1.48
PDLIM5-221ENST00000542407 ICOSQ9Y6W8 199 aa5.83□□□□□ -1.48
PDLIM5-221ENST00000542407 TRAV12-3A0A0B4J271 114 aa5.82□□□□□ -1.48
PDLIM5-221ENST00000542407 AMELXQ99217 191 aa5.82□□□□□ -1.48
PDLIM5-221ENST00000542407 IGHV4OR15-8A0A075B7B6 117 aa5.82□□□□□ -1.48
PDLIM5-221ENST00000542407 A0A087WW49 117 aa5.82□□□□□ -1.48
PDLIM5-221ENST00000542407 C6orf223Q8N319 242 aa5.82□□□□□ -1.48
PDLIM5-221ENST00000542407 TM2D3Q9BRN9 247 aa5.82□□□□□ -1.48
PDLIM5-221ENST00000542407 ESM1Q9NQ30 184 aa5.82□□□□□ -1.48
PDLIM5-221ENST00000542407 UNC79Q9P2D8 2635 aa5.82□□□□□ -1.48
PDLIM5-221ENST00000542407 DNAJC9-AS1A6NH13 148 aa5.82□□□□□ -1.48
PDLIM5-221ENST00000542407 PRR9Q5T870 116 aa5.82□□□□□ -1.48
PDLIM5-221ENST00000542407 C18orf65Q6ZTR6 163 aa5.82□□□□□ -1.48
PDLIM5-221ENST00000542407 SMCR5Q8TEV8 140 aa5.82□□□□□ -1.48
PDLIM5-221ENST00000542407 TRBV30A0A0K0K1B3 111 aa5.81□□□□□ -1.48
PDLIM5-221ENST00000542407 MRPS36P82909 103 aaKnown RBP5.81□□□□□ -1.48
PDLIM5-221ENST00000542407 IGIPA6NJ69 53 aa5.81□□□□□ -1.48
PDLIM5-221ENST00000542407 DEFB1P60022 68 aa5.81□□□□□ -1.48
PDLIM5-221ENST00000542407 GCN1Q92616 2671 aaKnown RBP5.81□□□□□ -1.48
PDLIM5-221ENST00000542407 IGHV4-4A0A075B6R2 117 aa5.8□□□□□ -1.48
PDLIM5-221ENST00000542407 GNRH2O43555 120 aa5.8□□□□□ -1.48
PDLIM5-221ENST00000542407 FLNAP21333 2647 aaKnown RBP5.8□□□□□ -1.48
PDLIM5-221ENST00000542407 TMEM223A0PJW6 202 aa5.8□□□□□ -1.48
PDLIM5-221ENST00000542407 BEAN1Q3B7T3 259 aa5.8□□□□□ -1.48
PDLIM5-221ENST00000542407 LENEPQ9Y5L5 61 aa5.8□□□□□ -1.48
PDLIM5-221ENST00000542407 ITPR2Q14571 2701 aa5.8□□□□□ -1.48
PDLIM5-221ENST00000542407 LEPROTO15243 131 aa5.79□□□□□ -1.48
PDLIM5-221ENST00000542407 RBM3P98179 157 aaKnown RBP5.79□□□□□ -1.48
PDLIM5-221ENST00000542407 ZNF876PQ49A33 203 aa5.79□□□□□ -1.48
PDLIM5-221ENST00000542407 ZFAND2AQ8N6M9 145 aa5.79□□□□□ -1.48
PDLIM5-221ENST00000542407 SPATA3Q8NHX4 192 aa5.79□□□□□ -1.48
PDLIM5-221ENST00000542407 A0A0J9YXV3 536 aa5.79□□□□□ -1.48
PDLIM5-221ENST00000542407 A0A0J9YXY3 114 aa5.79□□□□□ -1.48
PDLIM5-221ENST00000542407 RNASE4P34096 147 aaKnown RBP5.79□□□□□ -1.48
PDLIM5-221ENST00000542407 FAM74A4Q5TZK3 123 aa5.79□□□□□ -1.48
PDLIM5-221ENST00000542407 TMEM141Q96I45 108 aa5.79□□□□□ -1.48
PDLIM5-221ENST00000542407 IGHV1-58A0A0C4DH39 117 aa5.79□□□□□ -1.48
PDLIM5-221ENST00000542407 F6UB75 175 aa5.79□□□□□ -1.48
PDLIM5-221ENST00000542407 I3L3M4 83 aa5.79□□□□□ -1.48
PDLIM5-221ENST00000542407 CCKP06307 115 aa5.79□□□□□ -1.48
PDLIM5-221ENST00000542407 SDIM1Q6ZPB5 146 aa5.79□□□□□ -1.48
PDLIM5-221ENST00000542407 KTN1-AS1Q86SY8 53 aa5.79□□□□□ -1.48
PDLIM5-221ENST00000542407 C4orf3Q8WVX3 66 aa5.79□□□□□ -1.48
PDLIM5-221ENST00000542407 DAD1P61803 113 aa5.78□□□□□ -1.48
PDLIM5-221ENST00000542407 RHOHQ15669 191 aa5.78□□□□□ -1.48
PDLIM5-221ENST00000542407 DEFB136Q30KP8 78 aa5.78□□□□□ -1.48
PDLIM5-221ENST00000542407 IGKV3-7A0A075B6H7 116 aa5.78□□□□□ -1.48
PDLIM5-221ENST00000542407 SDHAF1A6NFY7 115 aa5.78□□□□□ -1.48
PDLIM5-221ENST00000542407 VCYO14598 125 aa5.78□□□□□ -1.48
PDLIM5-221ENST00000542407 PPP1R17O96001 155 aa5.78□□□□□ -1.48
PDLIM5-221ENST00000542407 LYPD5Q6UWN5 251 aa5.78□□□□□ -1.48
PDLIM5-221ENST00000542407 LST1O00453 97 aa5.77□□□□□ -1.49
PDLIM5-221ENST00000542407 INAFM2P0DMQ5 153 aa5.77□□□□□ -1.49
PDLIM5-221ENST00000542407 SLURP1P55000 103 aa5.77□□□□□ -1.49
PDLIM5-221ENST00000542407 ADAMTSL4-AS1Q5T5F5 129 aa5.77□□□□□ -1.49
PDLIM5-221ENST00000542407 DAND5Q8N907 189 aa5.77□□□□□ -1.49
PDLIM5-221ENST00000542407 K7EQG2 157 aa5.77□□□□□ -1.49
PDLIM5-221ENST00000542407 TIMM17AQ99595 171 aa5.77□□□□□ -1.49
PDLIM5-221ENST00000542407 TRAV21A0A0B4J279 112 aa5.76□□□□□ -1.49
PDLIM5-221ENST00000542407 RNASE1P07998 156 aaKnown RBP5.76□□□□□ -1.49
PDLIM5-221ENST00000542407 SUMO4Q6EEV6 95 aa5.76□□□□□ -1.49
PDLIM5-221ENST00000542407 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.76□□□□□ -1.49
PDLIM5-221ENST00000542407 A0A0A0MQY5 61 aa5.76□□□□□ -1.49
PDLIM5-221ENST00000542407 S100A7L2Q5SY68 101 aa5.76□□□□□ -1.49
PDLIM5-221ENST00000542407 SMR3AQ99954 134 aa5.76□□□□□ -1.49
PDLIM5-221ENST00000542407 KLLNB2CW77 178 aa5.76□□□□□ -1.49
PDLIM5-221ENST00000542407 IGHV3-30-3P0DP02 117 aa5.76□□□□□ -1.49
PDLIM5-221ENST00000542407 RNASE13Q5GAN3 156 aaKnown RBP5.76□□□□□ -1.49
PDLIM5-221ENST00000542407 TIMM21Q9BVV7 248 aa5.76□□□□□ -1.49
PDLIM5-221ENST00000542407 CCDC168Q8NDH2 2452 aa5.75□□□□□ -1.49
PDLIM5-221ENST00000542407 H7BZZ5 65 aa5.75□□□□□ -1.49
PDLIM5-221ENST00000542407 MPLKIPQ8TAP9 179 aa5.75□□□□□ -1.49
PDLIM5-221ENST00000542407 POLR2KP53803 58 aaKnown RBP5.75□□□□□ -1.49
PDLIM5-221ENST00000542407 NDUFA12Q9UI09 145 aa5.75□□□□□ -1.49
PDLIM5-221ENST00000542407 OTOGQ6ZRI0 2925 aa5.74□□□□□ -1.49
PDLIM5-221ENST00000542407 A0A0J9YX75 114 aa5.74□□□□□ -1.49
PDLIM5-221ENST00000542407 GYPEP15421 78 aa5.74□□□□□ -1.49
PDLIM5-221ENST00000542407 M0R378 163 aa5.74□□□□□ -1.49
PDLIM5-221ENST00000542407 RNASE3P12724 160 aaKnown RBP5.74□□□□□ -1.49
PDLIM5-221ENST00000542407 XCL1P47992 114 aa5.74□□□□□ -1.49
PDLIM5-221ENST00000542407 LINC01006Q8NI28 216 aa5.74□□□□□ -1.49
PDLIM5-221ENST00000542407 XCL2Q9UBD3 114 aa5.74□□□□□ -1.49
PDLIM5-221ENST00000542407 FASNP49327 2511 aaKnown RBP5.73□□□□□ -1.49
PDLIM5-221ENST00000542407 TLN2Q9Y4G6 2542 aa5.73□□□□□ -1.49
PDLIM5-221ENST00000542407 CD28P10747 220 aa5.73□□□□□ -1.49
PDLIM5-221ENST00000542407 C20orf197Q8N268 126 aa5.73□□□□□ -1.49
PDLIM5-221ENST00000542407 IGKV3D-7A0A0C4DH55 119 aa5.73□□□□□ -1.49
PDLIM5-221ENST00000542407 LITAFQ99732 161 aa5.73□□□□□ -1.49
PDLIM5-221ENST00000542407 LY6G6DO95868 133 aa5.73□□□□□ -1.49
PDLIM5-221ENST00000542407 TMEM61Q8N0U2 210 aa5.73□□□□□ -1.49
PDLIM5-221ENST00000542407 SONP18583 2426 aaKnown RBP5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms