RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 IGHV1-58A0A0C4DH39 117 aa5.02□□□□□ -1.61
VPS53-205ENST00000541903 SIVA1O15304 175 aa5.02□□□□□ -1.61
VPS53-205ENST00000541903 DLEU1O43261 78 aa5.02□□□□□ -1.61
VPS53-205ENST00000541903 DNAH10OSP0CZ25 163 aa5.02□□□□□ -1.61
VPS53-205ENST00000541903 XCL1P47992 114 aa5.02□□□□□ -1.61
VPS53-205ENST00000541903 PCP2Q8IVA1 136 aa5.02□□□□□ -1.61
VPS53-205ENST00000541903 BOD1L2Q8IYS8 172 aa5.02□□□□□ -1.61
VPS53-205ENST00000541903 CHCHD10Q8WYQ3 142 aaPredicted RBP5.02□□□□□ -1.61
VPS53-205ENST00000541903 UBE2WQ96B02 151 aa5.02□□□□□ -1.61
VPS53-205ENST00000541903 UPK3BQ9BT76 320 aa5.02□□□□□ -1.61
VPS53-205ENST00000541903 PRR34Q9NV39 138 aa5.02□□□□□ -1.61
VPS53-205ENST00000541903 APLNQ9ULZ1 77 aa5.02□□□□□ -1.61
VPS53-205ENST00000541903 TRAV8-3A0A0A6YYJ7 113 aa5.01□□□□□ -1.61
VPS53-205ENST00000541903 MYMXA0A1B0GTQ4 84 aa5.01□□□□□ -1.61
VPS53-205ENST00000541903 ZNF815PA8K554 130 aa5.01□□□□□ -1.61
VPS53-205ENST00000541903 SMIM1B2RUZ4 78 aa5.01□□□□□ -1.61
VPS53-205ENST00000541903 J3QQQ9 107 aa5.01□□□□□ -1.61
VPS53-205ENST00000541903 MIAQ16674 131 aa5.01□□□□□ -1.61
VPS53-205ENST00000541903 CD164L2Q6UWJ8 174 aa5.01□□□□□ -1.61
VPS53-205ENST00000541903 TP73-AS1Q9UF72 201 aa5.01□□□□□ -1.61
VPS53-205ENST00000541903 IGLV10-54A0A075B6I4 117 aa5□□□□□ -1.61
VPS53-205ENST00000541903 A0A087WZ39 114 aa5□□□□□ -1.61
VPS53-205ENST00000541903 TRAV8-4A0A0B4J246 113 aa5□□□□□ -1.61
VPS53-205ENST00000541903 IGHV3OR16-9A0A0B4J2B5 98 aa5□□□□□ -1.61
VPS53-205ENST00000541903 COX7A2LO14548 114 aa5□□□□□ -1.61
VPS53-205ENST00000541903 TSPEAR-AS2P59090 65 aa5□□□□□ -1.61
VPS53-205ENST00000541903 ZFAND6Q6FIF0 208 aa5□□□□□ -1.61
VPS53-205ENST00000541903 ENHOQ6UWT2 76 aa5□□□□□ -1.61
VPS53-205ENST00000541903 C5orf38Q86SI9 138 aa5□□□□□ -1.61
VPS53-205ENST00000541903 C10orf126Q8N4M7 172 aa5□□□□□ -1.61
VPS53-205ENST00000541903 TTTY13Q9BZ97 58 aa5□□□□□ -1.61
VPS53-205ENST00000541903 IGLV5-39A0A0G2JS06 123 aa4.99□□□□□ -1.61
VPS53-205ENST00000541903 GAGE12HA6NDE8 117 aa4.99□□□□□ -1.61
VPS53-205ENST00000541903 MALP21145 153 aa4.99□□□□□ -1.61
VPS53-205ENST00000541903 SCGB1D4Q6XE38 83 aa4.99□□□□□ -1.61
VPS53-205ENST00000541903 LINC01561Q8N1V8 128 aa4.99□□□□□ -1.61
VPS53-205ENST00000541903 MAPKAPK5-AS1Q8N8E1 139 aa4.99□□□□□ -1.61
VPS53-205ENST00000541903 MUC7Q8TAX7 377 aa4.99□□□□□ -1.61
VPS53-205ENST00000541903 Q9H8V8 135 aa4.99□□□□□ -1.61
VPS53-205ENST00000541903 DNAH9Q9NYC9 4486 aa4.99□□□□□ -1.61
VPS53-205ENST00000541903 STAB2Q8WWQ8 2551 aa4.98□□□□□ -1.61
VPS53-205ENST00000541903 LINC00587B1AMM8 73 aa4.98□□□□□ -1.61
VPS53-205ENST00000541903 K7EP13 123 aa4.98□□□□□ -1.61
VPS53-205ENST00000541903 APOMO95445 188 aa4.98□□□□□ -1.61
VPS53-205ENST00000541903 PRSS2P07478 247 aa4.98□□□□□ -1.61
VPS53-205ENST00000541903 CTAG1AP78358 180 aa4.98□□□□□ -1.61
VPS53-205ENST00000541903 FOXI1Q12951 378 aa4.98□□□□□ -1.61
VPS53-205ENST00000541903 C2orf91Q6ZV80 131 aa4.98□□□□□ -1.61
VPS53-205ENST00000541903 COX7B2Q8TF08 81 aa4.98□□□□□ -1.61
VPS53-205ENST00000541903 RMI2Q96E14 147 aa4.98□□□□□ -1.61
VPS53-205ENST00000541903 WWC2-AS2Q96NR7 200 aa4.98□□□□□ -1.61
VPS53-205ENST00000541903 C1orf43Q9BWL3 253 aa4.98□□□□□ -1.61
VPS53-205ENST00000541903 TOMM7Q9P0U1 55 aa4.98□□□□□ -1.61
VPS53-205ENST00000541903 HIGD1BQ9P298 99 aa4.98□□□□□ -1.61
VPS53-205ENST00000541903 NDUFA12Q9UI09 145 aa4.98□□□□□ -1.61
VPS53-205ENST00000541903 IGKV2D-24A0A075B6R9 120 aa4.97□□□□□ -1.61
VPS53-205ENST00000541903 IBA57-AS1B1ANH7 110 aa4.97□□□□□ -1.61
VPS53-205ENST00000541903 NDUFA1O15239 70 aa4.97□□□□□ -1.61
VPS53-205ENST00000541903 HSD52Q0P140 79 aa4.97□□□□□ -1.61
VPS53-205ENST00000541903 ORAOV1Q8WV07 137 aa4.97□□□□□ -1.61
VPS53-205ENST00000541903 Q9HAA7 133 aa4.97□□□□□ -1.61
VPS53-205ENST00000541903 MEGF8Q7Z7M0 2845 aa4.97□□□□□ -1.61
VPS53-205ENST00000541903 M0R143 59 aa4.96□□□□□ -1.62
VPS53-205ENST00000541903 TTC32Q5I0X7 151 aa4.96□□□□□ -1.62
VPS53-205ENST00000541903 CFAP161Q6P656 301 aa4.96□□□□□ -1.62
VPS53-205ENST00000541903 SFTA2Q6UW10 78 aa4.96□□□□□ -1.62
VPS53-205ENST00000541903 A0A0J9YXY3 114 aa4.95□□□□□ -1.62
VPS53-205ENST00000541903 TMEM238C9JI98 176 aa4.95□□□□□ -1.62
VPS53-205ENST00000541903 CXCL5P42830 114 aa4.95□□□□□ -1.62
VPS53-205ENST00000541903 HERV-K104P63124 156 aa4.95□□□□□ -1.62
VPS53-205ENST00000541903 SPAG11BQ08648 103 aa4.95□□□□□ -1.62
VPS53-205ENST00000541903 BATFQ16520 125 aa4.95□□□□□ -1.62
VPS53-205ENST00000541903 TAL2Q16559 108 aa4.95□□□□□ -1.62
VPS53-205ENST00000541903 C6orf226Q5I0X4 101 aa4.95□□□□□ -1.62
VPS53-205ENST00000541903 MEIG1Q5JSS6 88 aa4.95□□□□□ -1.62
VPS53-205ENST00000541903 Q8IZM0 81 aa4.95□□□□□ -1.62
VPS53-205ENST00000541903 HIST1H4GQ99525 98 aa4.95□□□□□ -1.62
VPS53-205ENST00000541903 HINT1P49773 126 aaPredicted RBP4.94□□□□□ -1.62
VPS53-205ENST00000541903 CKS1BP61024 79 aa4.94□□□□□ -1.62
VPS53-205ENST00000541903 SRSF9Q13242 221 aaKnown RBP eCLIP4.94□□□□□ -1.62
VPS53-205ENST00000541903 CIRBPQ14011 172 aaKnown RBP4.94□□□□□ -1.62
VPS53-205ENST00000541903 KRTAP26-1Q6PEX3 210 aa4.94□□□□□ -1.62
VPS53-205ENST00000541903 ZNF625Q96I27 306 aaPredicted RBP4.94□□□□□ -1.62
VPS53-205ENST00000541903 TM2D2Q9BX73 214 aa4.94□□□□□ -1.62
VPS53-205ENST00000541903 SPANXB1Q9NS25 103 aaPredicted RBP4.94□□□□□ -1.62
VPS53-205ENST00000541903 COX11Q9Y6N1 276 aa4.94□□□□□ -1.62
VPS53-205ENST00000541903 NBDYA0A0U1RRE5 68 aa4.93□□□□□ -1.62
VPS53-205ENST00000541903 C3orf84H3BNL1 204 aa4.93□□□□□ -1.62
VPS53-205ENST00000541903 EREGO14944 169 aa4.93□□□□□ -1.62
VPS53-205ENST00000541903 TIMM17BO60830 172 aa4.93□□□□□ -1.62
VPS53-205ENST00000541903 GCSHP23434 173 aa4.93□□□□□ -1.62
VPS53-205ENST00000541903 BVES-AS1Q5T3Y7 98 aa4.93□□□□□ -1.62
VPS53-205ENST00000541903 PRKDCP78527 4128 aaKnown RBP4.92□□□□□ -1.62
VPS53-205ENST00000541903 ZNF561-AS1K7EIQ3 104 aa4.92□□□□□ -1.62
VPS53-205ENST00000541903 PTTG1IPP53801 180 aa4.92□□□□□ -1.62
VPS53-205ENST00000541903 KIAA0087Q14695 138 aa4.92□□□□□ -1.62
VPS53-205ENST00000541903 CEND1Q8N111 149 aa4.92□□□□□ -1.62
VPS53-205ENST00000541903 SNHG12Q9BXW3 62 aa4.92□□□□□ -1.62
VPS53-205ENST00000541903 KRTAP1-5Q9BYS1 174 aa4.92□□□□□ -1.62
VPS53-205ENST00000541903 PSCAO43653 123 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms