RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 PAX4O43316 350 aa5.85□□□□□ -1.47
CHD4-208ENST00000540960 TIRAPP58753 221 aa5.85□□□□□ -1.47
CHD4-208ENST00000540960 RPL39P62891 51 aaKnown RBP5.85□□□□□ -1.47
CHD4-208ENST00000540960 HERVK_113P63121 156 aa5.85□□□□□ -1.47
CHD4-208ENST00000540960 ANKRD39Q53RE8 183 aa5.85□□□□□ -1.47
CHD4-208ENST00000540960 TMEM170BQ5T4T1 132 aa5.85□□□□□ -1.47
CHD4-208ENST00000540960 FAM222AQ5U5X8 452 aa5.85□□□□□ -1.47
CHD4-208ENST00000540960 ATP6V0E2Q8NHE4 81 aa5.85□□□□□ -1.47
CHD4-208ENST00000540960 C11orf68Q9H3H3 251 aaKnown RBP5.85□□□□□ -1.47
CHD4-208ENST00000540960 UBE2D4Q9Y2X8 147 aa5.85□□□□□ -1.47
CHD4-208ENST00000540960 TRBV6-8A0A0A6YYG3 113 aa5.84□□□□□ -1.47
CHD4-208ENST00000540960 TMEM238LA0A1B0GVL6 79 aa5.84□□□□□ -1.47
CHD4-208ENST00000540960 LGALS3P17931 250 aaKnown RBP5.84□□□□□ -1.47
CHD4-208ENST00000540960 MRPL23Q16540 153 aaKnown RBP5.84□□□□□ -1.47
CHD4-208ENST00000540960 CHAC1Q9BUX1 264 aa5.84□□□□□ -1.47
CHD4-208ENST00000540960 DNAH5Q8TE73 4624 aa5.83□□□□□ -1.48
CHD4-208ENST00000540960 MYMXA0A1B0GTQ4 84 aa5.83□□□□□ -1.48
CHD4-208ENST00000540960 LEPROTO15243 131 aa5.83□□□□□ -1.48
CHD4-208ENST00000540960 FGF6P10767 208 aa5.83□□□□□ -1.48
CHD4-208ENST00000540960 GYPEP15421 78 aa5.83□□□□□ -1.48
CHD4-208ENST00000540960 SFTA2Q6UW10 78 aa5.83□□□□□ -1.48
CHD4-208ENST00000540960 FAM19A3Q7Z5A8 133 aa5.83□□□□□ -1.48
CHD4-208ENST00000540960 Q8NAQ8 132 aa5.83□□□□□ -1.48
CHD4-208ENST00000540960 COPS9Q8WXC6 57 aa5.83□□□□□ -1.48
CHD4-208ENST00000540960 SNHG12Q9BXW3 62 aa5.83□□□□□ -1.48
CHD4-208ENST00000540960 APLNQ9ULZ1 77 aa5.83□□□□□ -1.48
CHD4-208ENST00000540960 IGLV4-69A0A075B6H9 119 aa5.82□□□□□ -1.48
CHD4-208ENST00000540960 TRAV8-6A0A0B4J262 113 aa5.82□□□□□ -1.48
CHD4-208ENST00000540960 LINC00694P0DN24 101 aa5.82□□□□□ -1.48
CHD4-208ENST00000540960 SCGB1D4Q6XE38 83 aa5.82□□□□□ -1.48
CHD4-208ENST00000540960 CHCHD5Q9BSY4 110 aa5.82□□□□□ -1.48
CHD4-208ENST00000540960 ICOSQ9Y6W8 199 aa5.82□□□□□ -1.48
CHD4-208ENST00000540960 FAT1Q14517 4588 aa5.82□□□□□ -1.48
CHD4-208ENST00000540960 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.81□□□□□ -1.48
CHD4-208ENST00000540960 IGHV3-38A0A0C4DH36 116 aa5.81□□□□□ -1.48
CHD4-208ENST00000540960 A0A1B0GUV1 79 aa5.81□□□□□ -1.48
CHD4-208ENST00000540960 IGKV2-29A2NJV5 120 aaPredicted RBP5.81□□□□□ -1.48
CHD4-208ENST00000540960 ZNF815PA8K554 130 aa5.81□□□□□ -1.48
CHD4-208ENST00000540960 J3QQQ9 107 aa5.81□□□□□ -1.48
CHD4-208ENST00000540960 BATFQ16520 125 aa5.81□□□□□ -1.48
CHD4-208ENST00000540960 SERTAD4-AS1Q5TG53 156 aa5.81□□□□□ -1.48
CHD4-208ENST00000540960 Q6ZVH6 145 aa5.81□□□□□ -1.48
CHD4-208ENST00000540960 ORAOV1Q8WV07 137 aa5.81□□□□□ -1.48
CHD4-208ENST00000540960 PLA2G2DQ9UNK4 145 aa5.81□□□□□ -1.48
CHD4-208ENST00000540960 TMEM223A0PJW6 202 aa5.8□□□□□ -1.48
CHD4-208ENST00000540960 F5H768 121 aa5.8□□□□□ -1.48
CHD4-208ENST00000540960 HINT1P49773 126 aaPredicted RBP5.8□□□□□ -1.48
CHD4-208ENST00000540960 UBE2D1P51668 147 aa5.8□□□□□ -1.48
CHD4-208ENST00000540960 CIRBPQ14011 172 aaKnown RBP5.8□□□□□ -1.48
CHD4-208ENST00000540960 BVES-AS1Q5T3Y7 98 aa5.8□□□□□ -1.48
CHD4-208ENST00000540960 LINC00469Q8N7U9 141 aa5.8□□□□□ -1.48
CHD4-208ENST00000540960 CDC42SE2Q9NRR3 84 aa5.8□□□□□ -1.48
CHD4-208ENST00000540960 IGLV5-45A0A087WSX0 123 aa5.79□□□□□ -1.48
CHD4-208ENST00000540960 IGHV1-58A0A0C4DH39 117 aa5.79□□□□□ -1.48
CHD4-208ENST00000540960 A0A0J9YXV3 536 aa5.79□□□□□ -1.48
CHD4-208ENST00000540960 ZNF22P17026 224 aaPredicted RBP5.79□□□□□ -1.48
CHD4-208ENST00000540960 PTTG1IPP53801 180 aa5.79□□□□□ -1.48
CHD4-208ENST00000540960 SS18Q15532 418 aa5.79□□□□□ -1.48
CHD4-208ENST00000540960 MPV17L2Q567V2 206 aa5.79□□□□□ -1.48
CHD4-208ENST00000540960 NTM-AS1Q6ZSK4 140 aa5.79□□□□□ -1.48
CHD4-208ENST00000540960 C2orf91Q6ZV80 131 aa5.79□□□□□ -1.48
CHD4-208ENST00000540960 PCP2Q8IVA1 136 aa5.79□□□□□ -1.48
CHD4-208ENST00000540960 LINC01561Q8N1V8 128 aa5.79□□□□□ -1.48
CHD4-208ENST00000540960 HIST1H4GQ99525 98 aa5.79□□□□□ -1.48
CHD4-208ENST00000540960 TM2D2Q9BX73 214 aa5.79□□□□□ -1.48
CHD4-208ENST00000540960 TMEM238C9JI98 176 aa5.78□□□□□ -1.48
CHD4-208ENST00000540960 TMEM262E9PQX1 116 aa5.78□□□□□ -1.48
CHD4-208ENST00000540960 EREGO14944 169 aa5.78□□□□□ -1.48
CHD4-208ENST00000540960 SMIM13P0DJ93 91 aa5.78□□□□□ -1.48
CHD4-208ENST00000540960 NANOS2P60321 138 aaKnown RBP5.78□□□□□ -1.48
CHD4-208ENST00000540960 TNP2Q05952 138 aa5.78□□□□□ -1.48
CHD4-208ENST00000540960 SRSF9Q13242 221 aaKnown RBP eCLIP5.78□□□□□ -1.48
CHD4-208ENST00000540960 Q5VSD8 79 aa5.78□□□□□ -1.48
CHD4-208ENST00000540960 Q6ZUT4 128 aa5.78□□□□□ -1.48
CHD4-208ENST00000540960 VSIG2Q96IQ7 327 aa5.78□□□□□ -1.48
CHD4-208ENST00000540960 SPANXB1Q9NS25 103 aaPredicted RBP5.78□□□□□ -1.48
CHD4-208ENST00000540960 IGKV2D-26A0A0A0MRZ7 120 aa5.77□□□□□ -1.49
CHD4-208ENST00000540960 A0A0J9YXY3 114 aa5.77□□□□□ -1.49
CHD4-208ENST00000540960 TIMM17BO60830 172 aa5.77□□□□□ -1.49
CHD4-208ENST00000540960 HERV-K104P63124 156 aa5.77□□□□□ -1.49
CHD4-208ENST00000540960 LELP1Q5T871 98 aa5.77□□□□□ -1.49
CHD4-208ENST00000540960 CEND1Q8N111 149 aa5.77□□□□□ -1.49
CHD4-208ENST00000540960 OPRPNQ99935 248 aaPredicted RBP5.77□□□□□ -1.49
CHD4-208ENST00000540960 TP73-AS1Q9UF72 201 aa5.77□□□□□ -1.49
CHD4-208ENST00000540960 Q9UF83 564 aa5.77□□□□□ -1.49
CHD4-208ENST00000540960 VPS13BQ7Z7G8 4022 aa5.77□□□□□ -1.49
CHD4-208ENST00000540960 IGLL5B9A064 214 aa5.76□□□□□ -1.49
CHD4-208ENST00000540960 RPL24P83731 157 aaKnown RBP5.76□□□□□ -1.49
CHD4-208ENST00000540960 GAGE6Q13070 117 aa5.76□□□□□ -1.49
CHD4-208ENST00000540960 C11orf45Q8TAV5 145 aa5.76□□□□□ -1.49
CHD4-208ENST00000540960 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.75□□□□□ -1.49
CHD4-208ENST00000540960 TRAV13-1A0A0B4J241 112 aa5.75□□□□□ -1.49
CHD4-208ENST00000540960 LOC100131303A0A0U1RQF7 123 aa5.75□□□□□ -1.49
CHD4-208ENST00000540960 IGHV3-30-3P0DP02 117 aa5.75□□□□□ -1.49
CHD4-208ENST00000540960 IFITM1P13164 125 aa5.75□□□□□ -1.49
CHD4-208ENST00000540960 C12orf74Q32Q52 190 aa5.75□□□□□ -1.49
CHD4-208ENST00000540960 LINC00242Q5T6M2 205 aa5.75□□□□□ -1.49
CHD4-208ENST00000540960 LYRM7Q5U5X0 104 aa5.75□□□□□ -1.49
CHD4-208ENST00000540960 Q6ZR54 194 aa5.75□□□□□ -1.49
CHD4-208ENST00000540960 C15orf53Q8NAA6 179 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms