RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 GNRH2O43555 120 aa6.8□□□□□ -1.32
CLIP1-214ENST00000540539 MED14OSP0DP75 135 aa6.8□□□□□ -1.32
CLIP1-214ENST00000540539 LY6G5BQ8NDX9 201 aa6.8□□□□□ -1.32
CLIP1-214ENST00000540539 IGHV3-66A0A0C4DH42 116 aa6.79□□□□□ -1.32
CLIP1-214ENST00000540539 TRBV7-4A0A0J9YYF1 115 aa6.79□□□□□ -1.32
CLIP1-214ENST00000540539 ZFAND2AQ8N6M9 145 aa6.79□□□□□ -1.32
CLIP1-214ENST00000540539 OVOL2Q9BRP0 275 aa6.79□□□□□ -1.32
CLIP1-214ENST00000540539 E7EQL1 145 aa6.79□□□□□ -1.32
CLIP1-214ENST00000540539 C11orf72Q8NBR9 251 aa6.79□□□□□ -1.32
CLIP1-214ENST00000540539 TM2D3Q9BRN9 247 aa6.79□□□□□ -1.32
CLIP1-214ENST00000540539 TACC2O95359 2948 aa6.79□□□□□ -1.32
CLIP1-214ENST00000540539 TRAV21A0A0B4J279 112 aa6.78□□□□□ -1.32
CLIP1-214ENST00000540539 IGLV3-9A0A075B6K5 115 aa6.78□□□□□ -1.32
CLIP1-214ENST00000540539 IGKV2-29A2NJV5 120 aaPredicted RBP6.78□□□□□ -1.32
CLIP1-214ENST00000540539 PTPN13Q12923 2485 aa6.78□□□□□ -1.32
CLIP1-214ENST00000540539 SPG11Q96JI7 2443 aa6.77□□□□□ -1.33
CLIP1-214ENST00000540539 IGLV11-55A0A075B6I3 123 aa6.77□□□□□ -1.33
CLIP1-214ENST00000540539 UBE2E2Q96LR5 201 aa6.77□□□□□ -1.33
CLIP1-214ENST00000540539 Q9H8V8 135 aa6.77□□□□□ -1.33
CLIP1-214ENST00000540539 CELSR2Q9HCU4 2923 aa6.77□□□□□ -1.33
CLIP1-214ENST00000540539 IGHV3OR16-13A0A075B7E8 117 aa6.77□□□□□ -1.33
CLIP1-214ENST00000540539 IGHV3-74A0A0B4J1X5 117 aa6.77□□□□□ -1.33
CLIP1-214ENST00000540539 MRPL53Q96EL3 112 aaKnown RBP6.77□□□□□ -1.33
CLIP1-214ENST00000540539 CSMD1Q96PZ7 3565 aa6.77□□□□□ -1.33
CLIP1-214ENST00000540539 A0A1W2PPR1 153 aa6.76□□□□□ -1.33
CLIP1-214ENST00000540539 LECT2O14960 151 aa6.76□□□□□ -1.33
CLIP1-214ENST00000540539 SLPIP03973 132 aa6.76□□□□□ -1.33
CLIP1-214ENST00000540539 UBL5Q9BZL1 73 aa6.76□□□□□ -1.33
CLIP1-214ENST00000540539 IGHV1-3A0A0C4DH29 117 aa6.76□□□□□ -1.33
CLIP1-214ENST00000540539 PRB3Q04118 309 aaPredicted RBP6.76□□□□□ -1.33
CLIP1-214ENST00000540539 FAM74A4Q5TZK3 123 aa6.76□□□□□ -1.33
CLIP1-214ENST00000540539 M0QY20 66 aa6.75□□□□□ -1.33
CLIP1-214ENST00000540539 APOC4P55056 127 aa6.75□□□□□ -1.33
CLIP1-214ENST00000540539 KTN1-AS1Q86SY8 53 aa6.75□□□□□ -1.33
CLIP1-214ENST00000540539 LENEPQ9Y5L5 61 aa6.75□□□□□ -1.33
CLIP1-214ENST00000540539 LINC00337Q8N6G1 96 aa6.75□□□□□ -1.33
CLIP1-214ENST00000540539 C11orf68Q9H3H3 251 aaKnown RBP6.75□□□□□ -1.33
CLIP1-214ENST00000540539 CDKN2A-AS1Q9UH64 79 aa6.75□□□□□ -1.33
CLIP1-214ENST00000540539 ABCA12Q86UK0 2595 aa6.74□□□□□ -1.33
CLIP1-214ENST00000540539 CRPP02741 224 aa6.74□□□□□ -1.33
CLIP1-214ENST00000540539 TMEM254Q8TBM7 123 aa6.74□□□□□ -1.33
CLIP1-214ENST00000540539 SMIM11BQ8TCY0 68 aa6.74□□□□□ -1.33
CLIP1-214ENST00000540539 KRTAP3-3Q9BYR6 98 aa6.74□□□□□ -1.33
CLIP1-214ENST00000540539 KRTAP3-2Q9BYR7 98 aa6.74□□□□□ -1.33
CLIP1-214ENST00000540539 IGHV3-49A0A0A0MS15 119 aa6.74□□□□□ -1.33
CLIP1-214ENST00000540539 Q6ZRP5 223 aa6.74□□□□□ -1.33
CLIP1-214ENST00000540539 IGHV1-46P01743 117 aa6.73□□□□□ -1.33
CLIP1-214ENST00000540539 ORMDL1Q9P0S3 153 aa6.73□□□□□ -1.33
CLIP1-214ENST00000540539 A8MU10 97 aa6.73□□□□□ -1.33
CLIP1-214ENST00000540539 F6UB75 175 aa6.73□□□□□ -1.33
CLIP1-214ENST00000540539 IGHV1-8P0DP01 117 aa6.73□□□□□ -1.33
CLIP1-214ENST00000540539 Q1T7F1 81 aa6.73□□□□□ -1.33
CLIP1-214ENST00000540539 KHDC1LQ5JSQ8 128 aa6.73□□□□□ -1.33
CLIP1-214ENST00000540539 CLEC19AQ6UXS0 136 aa6.73□□□□□ -1.33
CLIP1-214ENST00000540539 Q6ZTC4 211 aa6.73□□□□□ -1.33
CLIP1-214ENST00000540539 IGHV1OR15-1A0A075B7D0 117 aa6.72□□□□□ -1.33
CLIP1-214ENST00000540539 FUSP35637 526 aaKnown RBP eCLIP6.72□□□□□ -1.33
CLIP1-214ENST00000540539 DEFB1P60022 68 aa6.72□□□□□ -1.33
CLIP1-214ENST00000540539 Q6ZTI0 123 aa6.72□□□□□ -1.33
CLIP1-214ENST00000540539 POLQO75417 2590 aa6.72□□□□□ -1.33
CLIP1-214ENST00000540539 FBN2P35556 2912 aa6.72□□□□□ -1.33
CLIP1-214ENST00000540539 HECTD1Q9ULT8 2610 aa6.72□□□□□ -1.33
CLIP1-214ENST00000540539 H0YGX0 51 aa6.72□□□□□ -1.33
CLIP1-214ENST00000540539 H3BS24 57 aa6.72□□□□□ -1.33
CLIP1-214ENST00000540539 PSPHP1O15172 72 aa6.72□□□□□ -1.33
CLIP1-214ENST00000540539 NDUFB3O43676 98 aa6.72□□□□□ -1.33
CLIP1-214ENST00000540539 LINC01547P58512 204 aaPredicted RBP6.72□□□□□ -1.33
CLIP1-214ENST00000540539 C11orf71Q6IPW1 123 aa6.72□□□□□ -1.33
CLIP1-214ENST00000540539 IGKV2-28A0A075B6P5 120 aa6.71□□□□□ -1.33
CLIP1-214ENST00000540539 IGKV2D-28P01615 120 aa6.71□□□□□ -1.33
CLIP1-214ENST00000540539 LCE2DQ5TA82 110 aaPredicted RBP6.71□□□□□ -1.34
CLIP1-214ENST00000540539 Q8N3U1 123 aa6.71□□□□□ -1.34
CLIP1-214ENST00000540539 LINC00588Q9Y4M8 146 aa6.71□□□□□ -1.34
CLIP1-214ENST00000540539 APCP25054 2843 aa6.71□□□□□ -1.34
CLIP1-214ENST00000540539 ANKRD17O75179 2603 aaKnown RBP6.71□□□□□ -1.34
CLIP1-214ENST00000540539 LRCOL1A6NCL2 159 aa6.7□□□□□ -1.34
CLIP1-214ENST00000540539 IGLV1-47P01700 117 aa6.7□□□□□ -1.34
CLIP1-214ENST00000540539 RPL36AP83881 106 aaKnown RBP6.7□□□□□ -1.34
CLIP1-214ENST00000540539 RPL36ALQ969Q0 106 aaKnown RBP6.7□□□□□ -1.34
CLIP1-214ENST00000540539 MAP1AP78559 2803 aaPredicted RBP6.7□□□□□ -1.34
CLIP1-214ENST00000540539 IGLV5-39A0A0G2JS06 123 aa6.7□□□□□ -1.34
CLIP1-214ENST00000540539 JMJD7-PLA2G4BH0Y9G9 81 aa6.7□□□□□ -1.34
CLIP1-214ENST00000540539 M0R378 163 aa6.7□□□□□ -1.34
CLIP1-214ENST00000540539 NREPQ16612 68 aa6.7□□□□□ -1.34
CLIP1-214ENST00000540539 DYNLRB2Q8TF09 96 aa6.7□□□□□ -1.34
CLIP1-214ENST00000540539 SORL1Q92673 2214 aa6.7□□□□□ -1.34
CLIP1-214ENST00000540539 IGLV5-45A0A087WSX0 123 aa6.69□□□□□ -1.34
CLIP1-214ENST00000540539 IGHV3-38A0A0C4DH36 116 aa6.69□□□□□ -1.34
CLIP1-214ENST00000540539 PRYO14603 147 aa6.69□□□□□ -1.34
CLIP1-214ENST00000540539 KLK9Q9UKQ9 250 aa6.69□□□□□ -1.34
CLIP1-214ENST00000540539 UNC79Q9P2D8 2635 aa6.69□□□□□ -1.34
CLIP1-214ENST00000540539 hDV103S1A0JD37 113 aa6.69□□□□□ -1.34
CLIP1-214ENST00000540539 LYPD2Q6UXB3 125 aa6.69□□□□□ -1.34
CLIP1-214ENST00000540539 ITPR2Q14571 2701 aa6.69□□□□□ -1.34
CLIP1-214ENST00000540539 HAMPP81172 84 aa6.68□□□□□ -1.34
CLIP1-214ENST00000540539 Q8N6K4 173 aa6.68□□□□□ -1.34
CLIP1-214ENST00000540539 CCL17Q92583 94 aa6.68□□□□□ -1.34
CLIP1-214ENST00000540539 CCL19Q99731 98 aa6.68□□□□□ -1.34
CLIP1-214ENST00000540539 NAV2Q8IVL1 2488 aa6.68□□□□□ -1.34
CLIP1-214ENST00000540539 ASH1LQ9NR48 2969 aaKnown RBP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms