RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 FAM231CP0DMU5 169 aa6.95□□□□□ -1.3
CLIP1-212ENST00000540304 C9orf66Q5T8R8 295 aa6.95□□□□□ -1.3
CLIP1-212ENST00000540304 LINC01561Q8N1V8 128 aa6.95□□□□□ -1.3
CLIP1-212ENST00000540304 TRAV8-4A0A0B4J246 113 aa6.94□□□□□ -1.3
CLIP1-212ENST00000540304 TCL1BO95988 128 aa6.94□□□□□ -1.3
CLIP1-212ENST00000540304 SPATA3Q8NHX4 192 aa6.94□□□□□ -1.3
CLIP1-212ENST00000540304 TMEM141Q96I45 108 aa6.94□□□□□ -1.3
CLIP1-212ENST00000540304 Q9UF83 564 aa6.94□□□□□ -1.3
CLIP1-212ENST00000540304 TRGV1A0A0A0MS02 117 aa6.94□□□□□ -1.3
CLIP1-212ENST00000540304 IGHV3-53P01767 116 aa6.94□□□□□ -1.3
CLIP1-212ENST00000540304 SCGB1C2P0DMR2 95 aa6.94□□□□□ -1.3
CLIP1-212ENST00000540304 CRYGAP11844 174 aa6.94□□□□□ -1.3
CLIP1-212ENST00000540304 RPL39P62891 51 aaKnown RBP6.94□□□□□ -1.3
CLIP1-212ENST00000540304 Q6ZSN1 163 aa6.94□□□□□ -1.3
CLIP1-212ENST00000540304 GTSCR1Q86UQ5 136 aa6.94□□□□□ -1.3
CLIP1-212ENST00000540304 CSNK1G2-AS1Q8NCQ2 148 aa6.94□□□□□ -1.3
CLIP1-212ENST00000540304 C16orf74Q96GX8 76 aa6.94□□□□□ -1.3
CLIP1-212ENST00000540304 TIMM17AQ99595 171 aa6.94□□□□□ -1.3
CLIP1-212ENST00000540304 SPANXCQ9NY87 97 aa6.94□□□□□ -1.3
CLIP1-212ENST00000540304 TRBV7-7A0A0K0K1E9 115 aa6.93□□□□□ -1.3
CLIP1-212ENST00000540304 TRACP01848 142 aa6.93□□□□□ -1.3
CLIP1-212ENST00000540304 COX7CP15954 63 aa6.93□□□□□ -1.3
CLIP1-212ENST00000540304 TMEM258P61165 79 aa6.92□□□□□ -1.3
CLIP1-212ENST00000540304 DAZ2Q13117 558 aaKnown RBP6.92□□□□□ -1.3
CLIP1-212ENST00000540304 C20orf203Q8NBC4 194 aa6.92□□□□□ -1.3
CLIP1-212ENST00000540304 Q6ZTI0 123 aa6.92□□□□□ -1.3
CLIP1-212ENST00000540304 NTN5Q8WTR8 489 aaPredicted RBP6.92□□□□□ -1.3
CLIP1-212ENST00000540304 HIST1H4GQ99525 98 aa6.92□□□□□ -1.3
CLIP1-212ENST00000540304 TRAV13-1A0A0B4J241 112 aa6.91□□□□□ -1.3
CLIP1-212ENST00000540304 PLAC8L1A1L4L8 177 aa6.91□□□□□ -1.3
CLIP1-212ENST00000540304 UBE2D3P61077 147 aa6.91□□□□□ -1.3
CLIP1-212ENST00000540304 UBE2D2P62837 147 aa6.91□□□□□ -1.3
CLIP1-212ENST00000540304 NOP10Q9NPE3 64 aaKnown RBP6.91□□□□□ -1.3
CLIP1-212ENST00000540304 SLC25A20O43772 301 aa6.91□□□□□ -1.3
CLIP1-212ENST00000540304 MYMXA0A1B0GTQ4 84 aa6.9□□□□□ -1.3
CLIP1-212ENST00000540304 A8MZ25 164 aa6.9□□□□□ -1.31
CLIP1-212ENST00000540304 PAPPA-AS1Q5QFB9 102 aa6.9□□□□□ -1.31
CLIP1-212ENST00000540304 OVOL2Q9BRP0 275 aa6.9□□□□□ -1.31
CLIP1-212ENST00000540304 TEX49A0A1B0GTD5 131 aa6.89□□□□□ -1.31
CLIP1-212ENST00000540304 IGLV4-69A0A075B6H9 119 aa6.89□□□□□ -1.31
CLIP1-212ENST00000540304 TRBV7-3A0A075B6L6 115 aa6.89□□□□□ -1.31
CLIP1-212ENST00000540304 MAPKAPK5-AS1Q8N8E1 139 aa6.89□□□□□ -1.31
CLIP1-212ENST00000540304 OPRPNQ99935 248 aaPredicted RBP6.89□□□□□ -1.31
CLIP1-212ENST00000540304 TRBV10-1A0A0K0K1A3 114 aa6.88□□□□□ -1.31
CLIP1-212ENST00000540304 K7EQD1 137 aa6.88□□□□□ -1.31
CLIP1-212ENST00000540304 BRK1Q8WUW1 75 aa6.88□□□□□ -1.31
CLIP1-212ENST00000540304 IGLV4-3A0A075B6K6 122 aa6.87□□□□□ -1.31
CLIP1-212ENST00000540304 TRGV2A0A075B6R0 118 aa6.87□□□□□ -1.31
CLIP1-212ENST00000540304 C11orf86A6NJI1 115 aa6.87□□□□□ -1.31
CLIP1-212ENST00000540304 HERVK_113P61574 105 aa6.87□□□□□ -1.31
CLIP1-212ENST00000540304 WFDC9Q8NEX5 89 aa6.87□□□□□ -1.31
CLIP1-212ENST00000540304 CHCHD7Q9BUK0 85 aa6.87□□□□□ -1.31
CLIP1-212ENST00000540304 IGHV3-38A0A0C4DH36 116 aa6.87□□□□□ -1.31
CLIP1-212ENST00000540304 RPL36AP83881 106 aaKnown RBP6.87□□□□□ -1.31
CLIP1-212ENST00000540304 RPL36ALQ969Q0 106 aaKnown RBP6.87□□□□□ -1.31
CLIP1-212ENST00000540304 PLEKHB2Q96CS7 222 aa6.87□□□□□ -1.31
CLIP1-212ENST00000540304 STAB1Q9NY15 2570 aa6.87□□□□□ -1.31
CLIP1-212ENST00000540304 SLC25A29Q8N8R3 303 aa6.86□□□□□ -1.31
CLIP1-212ENST00000540304 RNASE13Q5GAN3 156 aaKnown RBP6.85□□□□□ -1.31
CLIP1-212ENST00000540304 PRIMA1Q86XR5 153 aa6.85□□□□□ -1.31
CLIP1-212ENST00000540304 LINC01620Q4KN68 170 aa6.85□□□□□ -1.31
CLIP1-212ENST00000540304 DAZ4Q86SG3 579 aaKnown RBP6.85□□□□□ -1.31
CLIP1-212ENST00000540304 DAZ3Q9NR90 486 aaKnown RBP6.85□□□□□ -1.31
CLIP1-212ENST00000540304 UBE2D4Q9Y2X8 147 aa6.85□□□□□ -1.31
CLIP1-212ENST00000540304 MAST4O15021 2626 aa6.84□□□□□ -1.31
CLIP1-212ENST00000540304 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.84□□□□□ -1.31
CLIP1-212ENST00000540304 TRBV6-4A0A1B0GX49 114 aa6.84□□□□□ -1.31
CLIP1-212ENST00000540304 IGKV2-29A2NJV5 120 aaPredicted RBP6.84□□□□□ -1.31
CLIP1-212ENST00000540304 APOC4P55056 127 aa6.84□□□□□ -1.31
CLIP1-212ENST00000540304 FAM104AQ969W3 186 aa6.84□□□□□ -1.31
CLIP1-212ENST00000540304 AMELXQ99217 191 aa6.84□□□□□ -1.31
CLIP1-212ENST00000540304 X6R8D5 127 aa6.84□□□□□ -1.31
CLIP1-212ENST00000540304 PKD1L1Q8TDX9 2849 aa6.84□□□□□ -1.31
CLIP1-212ENST00000540304 TRGV4A0A0C4DH28 118 aa6.84□□□□□ -1.31
CLIP1-212ENST00000540304 ZNF22P17026 224 aaPredicted RBP6.84□□□□□ -1.31
CLIP1-212ENST00000540304 KRTAP24-1Q3LI83 254 aa6.84□□□□□ -1.31
CLIP1-212ENST00000540304 TMEM170BQ5T4T1 132 aa6.84□□□□□ -1.31
CLIP1-212ENST00000540304 FBN1P35555 2871 aaKnown RBP6.83□□□□□ -1.32
CLIP1-212ENST00000540304 LINC00612Q8N6U2 182 aa6.83□□□□□ -1.32
CLIP1-212ENST00000540304 IMUPQ9GZP8 106 aa6.83□□□□□ -1.32
CLIP1-212ENST00000540304 RPL13AP40429 203 aaKnown RBP6.82□□□□□ -1.32
CLIP1-212ENST00000540304 PMAIP1Q13794 54 aa6.82□□□□□ -1.32
CLIP1-212ENST00000540304 TIMM21Q9BVV7 248 aa6.82□□□□□ -1.32
CLIP1-212ENST00000540304 BAHCC1Q9P281 2608 aa6.82□□□□□ -1.32
CLIP1-212ENST00000540304 A0A0J9YXV3 536 aa6.82□□□□□ -1.32
CLIP1-212ENST00000540304 ATP5G1P05496 136 aa6.82□□□□□ -1.32
CLIP1-212ENST00000540304 UBE2D1P51668 147 aa6.82□□□□□ -1.32
CLIP1-212ENST00000540304 FHL2Q14192 279 aa6.82□□□□□ -1.32
CLIP1-212ENST00000540304 UBE2WQ96B02 151 aa6.82□□□□□ -1.32
CLIP1-212ENST00000540304 ZNF815PA8K554 130 aa6.81□□□□□ -1.32
CLIP1-212ENST00000540304 DEFB130BP0DP73 79 aa6.81□□□□□ -1.32
CLIP1-212ENST00000540304 DEFB130AP0DP74 79 aa6.81□□□□□ -1.32
CLIP1-212ENST00000540304 MRPS36P82909 103 aaKnown RBP6.81□□□□□ -1.32
CLIP1-212ENST00000540304 DEFB135Q30KP9 77 aa6.81□□□□□ -1.32
CLIP1-212ENST00000540304 IGHV3-64A0A075B6Q5 118 aa6.81□□□□□ -1.32
CLIP1-212ENST00000540304 TMEM223A0PJW6 202 aa6.81□□□□□ -1.32
CLIP1-212ENST00000540304 NTM-AS1Q6ZSK4 140 aa6.81□□□□□ -1.32
CLIP1-212ENST00000540304 UPK3BQ9BT76 320 aa6.81□□□□□ -1.32
CLIP1-212ENST00000540304 LOC100131303A0A0U1RQF7 123 aa6.8□□□□□ -1.32
CLIP1-212ENST00000540304 DGAT2L7PQ6IED9 249 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms