RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 TCL1AP56279 114 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 FXYD7P58549 80 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 TAS2R20P59543 309 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 RPS28P62857 69 aaKnown RBP1.5□□□□□ -2.17
SYNE1-232ENST00000535081 ERHP84090 104 aaKnown RBP1.5□□□□□ -2.17
SYNE1-232ENST00000535081 ESRGQ1W209 222 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 KLK9Q2XQG4 91 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 Q499Y3 187 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 MRPL54Q6P161 138 aaKnown RBP1.5□□□□□ -2.17
SYNE1-232ENST00000535081 TMEM91Q6ZNR0 172 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 Q6ZRU5 148 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 C6orf201Q7Z4U5 140 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 AMN1Q8IY45 258 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 TOMM5Q8N4H5 51 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 Q8N814 137 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 OR1L8Q8NGR8 309 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 OR4X1Q8NH49 305 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 SMIM19Q96E16 107 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 LINC01587Q99440 93 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 ZNF471Q9BX82 626 aaPredicted RBP1.5□□□□□ -2.17
SYNE1-232ENST00000535081 SMIM3Q9BZL3 60 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 SPANXB1Q9NS25 103 aaPredicted RBP1.5□□□□□ -2.17
SYNE1-232ENST00000535081 RPRMQ9NS64 109 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 TMEM242Q9NWH2 141 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 NDUFB11Q9NX14 153 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 KLK9Q9UKQ9 250 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 FUT9Q9Y231 359 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 CYSLTR1Q9Y271 337 aa1.5□□□□□ -2.17
SYNE1-232ENST00000535081 TIMM8BQ9Y5J9 83 aaPredicted RBP1.5□□□□□ -2.17
SYNE1-232ENST00000535081 RNF213Q63HN8 5207 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 TRGV2A0A075B6R0 118 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 TRBV6-7A0A0A0MS04 114 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 IRGMA1A4Y4 181 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 RBFOX3A6NFN3 312 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 UMAD1C9J7I0 102 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 GABARAPH6UMI1 98 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 J3KT08 172 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 M0R129 80 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 HYPMO75409 117 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 IGLC2P0DOY2 106 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 IGLC3P0DOY3 106 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 HIST1H1DP16402 221 aaKnown RBP1.49□□□□□ -2.17
SYNE1-232ENST00000535081 TSPOP30536 169 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 PSMB3P49720 205 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 HINT1P49773 126 aaPredicted RBP1.49□□□□□ -2.17
SYNE1-232ENST00000535081 PRCDQ00LT1 54 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 PMVKQ15126 192 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 AADACL3Q5VUY0 350 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 Q6ZRN7 208 aaPredicted RBP1.49□□□□□ -2.17
SYNE1-232ENST00000535081 SCXQ7RTU7 201 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 DCANP1Q8TF63 244 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 MBD3L1Q8WWY6 194 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 SLC25A21Q9BQT8 299 aaPredicted RBP1.49□□□□□ -2.17
SYNE1-232ENST00000535081 LINC00467Q9BRT7 94 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 WDR61Q9GZS3 305 aaKnown RBP1.49□□□□□ -2.17
SYNE1-232ENST00000535081 SLC35B3Q9H1N7 401 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 SH3BGRL3Q9H299 93 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 MAP1LC3AQ9H492 121 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 NPVFQ9HCQ7 196 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 COMMD9Q9P000 198 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 AK3Q9UIJ7 227 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 ANXA10Q9UJ72 324 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 PRNDQ9UKY0 176 aa1.49□□□□□ -2.17
SYNE1-232ENST00000535081 LSM2Q9Y333 95 aaKnown RBP1.49□□□□□ -2.17
SYNE1-232ENST00000535081 VPS13BQ7Z7G8 4022 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 A0A0B4J2C4 111 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 TEX50A0A1B0GTY4 177 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 TRDV1A0A1B0GX56 115 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 C7orf71A4D174 169 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 MEIS3P1A6NDR6 274 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 TMEM14DPA8MWL7 114 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 C9JAW5 83 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 H3BRM9 83 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 K7EIM0 57 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 K7EP34 96 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 UPK2O00526 184 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 ISLRO14498 428 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 SFT2D2O95562 160 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 SPINK8P0C7L1 97 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 LIMS3P0CW19 117 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 LIMS4P0CW20 117 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 RPL7P18124 248 aaKnown RBP1.48□□□□□ -2.17
SYNE1-232ENST00000535081 ORM2P19652 201 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 CRYBB3P26998 211 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 RPL12P30050 165 aaKnown RBP1.48□□□□□ -2.17
SYNE1-232ENST00000535081 G6PCP35575 357 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 DAPP51397 102 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 H2BFSP57053 126 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 YPEL3P61236 119 aaPredicted RBP1.48□□□□□ -2.17
SYNE1-232ENST00000535081 ADIRFQ15847 76 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 SPATA45Q537H7 98 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 OR10J3Q5JRS4 329 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 UBE2NLQ5JXB2 153 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 C12orf73Q69YU5 71 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 Q6Q795 121 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 FAM19A5Q7Z5A7 132 aaPredicted RBP1.48□□□□□ -2.17
SYNE1-232ENST00000535081 TMEM263Q8WUH6 116 aaKnown RBP1.48□□□□□ -2.17
SYNE1-232ENST00000535081 FXYD5Q96DB9 178 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 DPH3Q96FX2 82 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 PGLYRP3Q96LB9 341 aa1.48□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms