RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 K7EP13 123 aa9.66□□□□□ -0.86
TRIM3-212ENST00000533064 DLEU1O43261 78 aa9.66□□□□□ -0.86
TRIM3-212ENST00000533064 CRPP02741 224 aa9.66□□□□□ -0.86
TRIM3-212ENST00000533064 BOD1L2Q8IYS8 172 aa9.66□□□□□ -0.86
TRIM3-212ENST00000533064 LINC00269Q8N2A0 174 aa9.66□□□□□ -0.86
TRIM3-212ENST00000533064 IGKV3OR2-268A0A0C4DH90 116 aa9.65□□□□□ -0.86
TRIM3-212ENST00000533064 HERVK_113P61574 105 aa9.65□□□□□ -0.86
TRIM3-212ENST00000533064 TINCRA0A1B0GVN0 87 aa9.64□□□□□ -0.87
TRIM3-212ENST00000533064 E9PLD3 99 aa9.64□□□□□ -0.87
TRIM3-212ENST00000533064 UBE2D1P51668 147 aa9.64□□□□□ -0.87
TRIM3-212ENST00000533064 REG3AQ06141 175 aa9.64□□□□□ -0.87
TRIM3-212ENST00000533064 TMEM170BQ5T4T1 132 aa9.64□□□□□ -0.87
TRIM3-212ENST00000533064 CLPSL2Q6UWE3 100 aa9.64□□□□□ -0.87
TRIM3-212ENST00000533064 PCP2Q8IVA1 136 aa9.64□□□□□ -0.87
TRIM3-212ENST00000533064 TP73-AS1Q9UF72 201 aa9.64□□□□□ -0.87
TRIM3-212ENST00000533064 TRAV13-1A0A0B4J241 112 aa9.63□□□□□ -0.87
TRIM3-212ENST00000533064 LY6G6CO95867 125 aa9.63□□□□□ -0.87
TRIM3-212ENST00000533064 ZNF22P17026 224 aaPredicted RBP9.63□□□□□ -0.87
TRIM3-212ENST00000533064 UBE2WQ96B02 151 aa9.63□□□□□ -0.87
TRIM3-212ENST00000533064 VPS13DQ5THJ4 4388 aa9.62□□□□□ -0.87
TRIM3-212ENST00000533064 CCL25O15444 150 aa9.62□□□□□ -0.87
TRIM3-212ENST00000533064 SS18Q15532 418 aa9.62□□□□□ -0.87
TRIM3-212ENST00000533064 TTC32Q5I0X7 151 aa9.62□□□□□ -0.87
TRIM3-212ENST00000533064 FAM19A3Q7Z5A8 133 aa9.62□□□□□ -0.87
TRIM3-212ENST00000533064 SVIPQ8NHG7 77 aa9.62□□□□□ -0.87
TRIM3-212ENST00000533064 LINC00476Q8WZB0 136 aa9.62□□□□□ -0.87
TRIM3-212ENST00000533064 TMEM223A0PJW6 202 aa9.61□□□□□ -0.87
TRIM3-212ENST00000533064 SEC11AP67812 179 aa9.61□□□□□ -0.87
TRIM3-212ENST00000533064 MIAQ16674 131 aa9.61□□□□□ -0.87
TRIM3-212ENST00000533064 PRR34Q9NV39 138 aa9.61□□□□□ -0.87
TRIM3-212ENST00000533064 LINC00959A0A1B0GUT2 108 aa9.61□□□□□ -0.87
TRIM3-212ENST00000533064 M0R143 59 aa9.61□□□□□ -0.87
TRIM3-212ENST00000533064 C2orf91Q6ZV80 131 aa9.61□□□□□ -0.87
TRIM3-212ENST00000533064 GEMIN7Q9H840 131 aaKnown RBP9.61□□□□□ -0.87
TRIM3-212ENST00000533064 TRAV8-3A0A0A6YYJ7 113 aa9.6□□□□□ -0.87
TRIM3-212ENST00000533064 TRAV8-4A0A0B4J246 113 aa9.6□□□□□ -0.87
TRIM3-212ENST00000533064 IBA57-AS1B1ANH7 110 aa9.6□□□□□ -0.87
TRIM3-212ENST00000533064 HERVK_113P63121 156 aa9.6□□□□□ -0.87
TRIM3-212ENST00000533064 TTTY13Q9BZ97 58 aa9.6□□□□□ -0.87
TRIM3-212ENST00000533064 IGLV5-45A0A087WSX0 123 aa9.59□□□□□ -0.87
TRIM3-212ENST00000533064 NBDYA0A0U1RRE5 68 aa9.59□□□□□ -0.87
TRIM3-212ENST00000533064 LINC00242Q5T6M2 205 aa9.59□□□□□ -0.87
TRIM3-212ENST00000533064 ENHOQ6UWT2 76 aa9.59□□□□□ -0.87
TRIM3-212ENST00000533064 SNHG12Q9BXW3 62 aa9.59□□□□□ -0.87
TRIM3-212ENST00000533064 DNAH1Q9P2D7 4330 aa9.58□□□□□ -0.88
TRIM3-212ENST00000533064 MAPKAPK5-AS1Q8N8E1 139 aa9.58□□□□□ -0.88
TRIM3-212ENST00000533064 Q9HAA7 133 aa9.58□□□□□ -0.88
TRIM3-212ENST00000533064 ALMS1Q8TCU4 4167 aa9.58□□□□□ -0.88
TRIM3-212ENST00000533064 IGLV10-54A0A075B6I4 117 aa9.58□□□□□ -0.88
TRIM3-212ENST00000533064 MYMXA0A1B0GTQ4 84 aa9.58□□□□□ -0.88
TRIM3-212ENST00000533064 LEPROTO15243 131 aa9.58□□□□□ -0.88
TRIM3-212ENST00000533064 RMI2Q96E14 147 aa9.58□□□□□ -0.88
TRIM3-212ENST00000533064 C1orf43Q9BWL3 253 aa9.58□□□□□ -0.88
TRIM3-212ENST00000533064 HIGD1BQ9P298 99 aa9.58□□□□□ -0.88
TRIM3-212ENST00000533064 H3BRM9 83 aa9.57□□□□□ -0.88
TRIM3-212ENST00000533064 EREGO14944 169 aa9.57□□□□□ -0.88
TRIM3-212ENST00000533064 CHCHD10Q8WYQ3 142 aaPredicted RBP9.57□□□□□ -0.88
TRIM3-212ENST00000533064 PLEKHB2Q96CS7 222 aa9.57□□□□□ -0.88
TRIM3-212ENST00000533064 IGKV2D-24A0A075B6R9 120 aa9.56□□□□□ -0.88
TRIM3-212ENST00000533064 J3QQQ9 107 aa9.56□□□□□ -0.88
TRIM3-212ENST00000533064 XCL1P47992 114 aa9.56□□□□□ -0.88
TRIM3-212ENST00000533064 COX6A2Q02221 97 aa9.56□□□□□ -0.88
TRIM3-212ENST00000533064 CDKN2A-AS1Q9UH64 79 aa9.56□□□□□ -0.88
TRIM3-212ENST00000533064 ZNF815PA8K554 130 aa9.55□□□□□ -0.88
TRIM3-212ENST00000533064 IGHV1-58A0A0C4DH39 117 aa9.55□□□□□ -0.88
TRIM3-212ENST00000533064 M0R2N4 97 aa9.55□□□□□ -0.88
TRIM3-212ENST00000533064 LGALS3P17931 250 aaKnown RBP9.55□□□□□ -0.88
TRIM3-212ENST00000533064 TSPEAR-AS2P59090 65 aa9.55□□□□□ -0.88
TRIM3-212ENST00000533064 C21orf62-AS1Q17RA5 79 aa9.55□□□□□ -0.88
TRIM3-212ENST00000533064 CD164L2Q6UWJ8 174 aa9.55□□□□□ -0.88
TRIM3-212ENST00000533064 KRTAP1-5Q9BYS1 174 aa9.55□□□□□ -0.88
TRIM3-212ENST00000533064 COX11Q9Y6N1 276 aa9.55□□□□□ -0.88
TRIM3-212ENST00000533064 HINT1P49773 126 aaPredicted RBP9.54□□□□□ -0.88
TRIM3-212ENST00000533064 KMT2AQ03164 3969 aa9.53□□□□□ -0.88
TRIM3-212ENST00000533064 IGHV3-64A0A075B6Q5 118 aa9.53□□□□□ -0.88
TRIM3-212ENST00000533064 SPINK8P0C7L1 97 aa9.53□□□□□ -0.88
TRIM3-212ENST00000533064 HSD52Q0P140 79 aa9.53□□□□□ -0.88
TRIM3-212ENST00000533064 BATFQ16520 125 aa9.53□□□□□ -0.88
TRIM3-212ENST00000533064 TM2D2Q9BX73 214 aa9.53□□□□□ -0.88
TRIM3-212ENST00000533064 DNAH6Q9C0G6 4158 aa9.53□□□□□ -0.88
TRIM3-212ENST00000533064 GAGE12HA6NDE8 117 aa9.52□□□□□ -0.89
TRIM3-212ENST00000533064 IGHV3OR16-9A0A0B4J2B5 98 aa9.51□□□□□ -0.89
TRIM3-212ENST00000533064 COX7A2LO14548 114 aa9.51□□□□□ -0.89
TRIM3-212ENST00000533064 BVES-AS1Q5T3Y7 98 aa9.51□□□□□ -0.89
TRIM3-212ENST00000533064 IGLV5-39A0A0G2JS06 123 aa9.51□□□□□ -0.89
TRIM3-212ENST00000533064 PSCAO43653 123 aa9.51□□□□□ -0.89
TRIM3-212ENST00000533064 MALP21145 153 aa9.51□□□□□ -0.89
TRIM3-212ENST00000533064 SCGB1D4Q6XE38 83 aa9.51□□□□□ -0.89
TRIM3-212ENST00000533064 C5orf38Q86SI9 138 aa9.51□□□□□ -0.89
TRIM3-212ENST00000533064 TMEM238LA0A1B0GVL6 79 aa9.5□□□□□ -0.89
TRIM3-212ENST00000533064 SMIM1B2RUZ4 78 aa9.5□□□□□ -0.89
TRIM3-212ENST00000533064 FOXI1Q12951 378 aa9.5□□□□□ -0.89
TRIM3-212ENST00000533064 Q6ZR54 194 aa9.5□□□□□ -0.89
TRIM3-212ENST00000533064 A0A087WZ39 114 aa9.49□□□□□ -0.89
TRIM3-212ENST00000533064 LCE6AA0A183 80 aa9.49□□□□□ -0.89
TRIM3-212ENST00000533064 TAL2Q16559 108 aa9.49□□□□□ -0.89
TRIM3-212ENST00000533064 COL5A1-AS1Q5SY13 56 aa9.49□□□□□ -0.89
TRIM3-212ENST00000533064 APOMO95445 188 aa9.48□□□□□ -0.89
TRIM3-212ENST00000533064 LINC01561Q8N1V8 128 aa9.48□□□□□ -0.89
TRIM3-212ENST00000533064 C6orf223Q8N319 242 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms