RNA–Protein interactions for RNA: ENST00000529661.1

C11orf88-204, Transcript of chromosome 11 open reading frame 88, humanhuman

TSL 3

Gene C11orf88, Length 624 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf88-204ENST00000529661 K7EIL1 84 aa1.35□□□□□ -2.19
C11orf88-204ENST00000529661 NMBP08949 121 aa1.35□□□□□ -2.19
C11orf88-204ENST00000529661 SFTA2Q6UW10 78 aa1.35□□□□□ -2.19
C11orf88-204ENST00000529661 SMIM11BQ8TCY0 68 aa1.35□□□□□ -2.19
C11orf88-204ENST00000529661 SMIM4Q8WVI0 70 aa1.35□□□□□ -2.19
C11orf88-204ENST00000529661 S100A16Q96FQ6 103 aaKnown RBP1.35□□□□□ -2.19
C11orf88-204ENST00000529661 ARL2-SNX15V9GYD0 113 aa1.35□□□□□ -2.19
C11orf88-204ENST00000529661 SSC5DA1L4H1 1573 aa1.34□□□□□ -2.19
C11orf88-204ENST00000529661 F2Z2F3 143 aa1.34□□□□□ -2.19
C11orf88-204ENST00000529661 LY6G6CO95867 125 aa1.34□□□□□ -2.19
C11orf88-204ENST00000529661 ZNF137PP52743 207 aa1.34□□□□□ -2.19
C11orf88-204ENST00000529661 COX17Q14061 63 aa1.34□□□□□ -2.19
C11orf88-204ENST00000529661 PEA15Q15121 130 aa1.34□□□□□ -2.19
C11orf88-204ENST00000529661 FAM223AQ8IWN6 122 aa1.34□□□□□ -2.19
C11orf88-204ENST00000529661 NRXN1Q9ULB1 1477 aa1.34□□□□□ -2.19
C11orf88-204ENST00000529661 NAV3Q8IVL0 2385 aa1.34□□□□□ -2.2
C11orf88-204ENST00000529661 KDM3BQ7LBC6 1761 aa1.34□□□□□ -2.2
C11orf88-204ENST00000529661 CADP27708 2225 aa1.34□□□□□ -2.2
C11orf88-204ENST00000529661 EDC4Q6P2E9 1401 aaKnown RBP1.33□□□□□ -2.2
C11orf88-204ENST00000529661 SHPRHQ149N8 1683 aa1.33□□□□□ -2.2
C11orf88-204ENST00000529661 ERVK-7P63135 1459 aa1.33□□□□□ -2.2
C11orf88-204ENST00000529661 GVQW2A0A096LPI5 108 aaPredicted RBP1.33□□□□□ -2.2
C11orf88-204ENST00000529661 FAM223BA6NKX1 122 aa1.33□□□□□ -2.2
C11orf88-204ENST00000529661 RRBP1Q9P2E9 1410 aaKnown RBP1.32□□□□□ -2.2
C11orf88-204ENST00000529661 MAP3K1Q13233 1512 aa1.32□□□□□ -2.2
C11orf88-204ENST00000529661 MGPP08493 103 aa1.32□□□□□ -2.2
C11orf88-204ENST00000529661 TDRG1Q3Y452 100 aa1.32□□□□□ -2.2
C11orf88-204ENST00000529661 CFAP126Q5VTH2 177 aa1.32□□□□□ -2.2
C11orf88-204ENST00000529661 SPRR4Q96PI1 79 aa1.32□□□□□ -2.2
C11orf88-204ENST00000529661 HIGD1BQ9P298 99 aa1.32□□□□□ -2.2
C11orf88-204ENST00000529661 DIP2BQ9P265 1576 aa1.32□□□□□ -2.2
C11orf88-204ENST00000529661 ANKRD36A6QL64 1941 aa1.32□□□□□ -2.2
C11orf88-204ENST00000529661 LRRIQ1Q96JM4 1722 aa1.32□□□□□ -2.2
C11orf88-204ENST00000529661 CRYBG1Q9Y4K1 1723 aa1.32□□□□□ -2.2
C11orf88-204ENST00000529661 TENM1Q9UKZ4 2725 aa1.31□□□□□ -2.2
C11orf88-204ENST00000529661 KDM5DQ9BY66 1539 aa1.31□□□□□ -2.2
C11orf88-204ENST00000529661 DCAF1Q9Y4B6 1507 aa1.31□□□□□ -2.2
C11orf88-204ENST00000529661 DNAJC13O75165 2243 aa1.31□□□□□ -2.2
C11orf88-204ENST00000529661 KMT2BQ9UMN6 2715 aaPredicted RBP1.31□□□□□ -2.2
C11orf88-204ENST00000529661 H3BQF6 201 aa1.31□□□□□ -2.2
C11orf88-204ENST00000529661 SMIM11AP58511 58 aa1.31□□□□□ -2.2
C11orf88-204ENST00000529661 FXYD6P3P58550 94 aa1.31□□□□□ -2.2
C11orf88-204ENST00000529661 PSMG4Q5JS54 123 aa1.31□□□□□ -2.2
C11orf88-204ENST00000529661 Q6ZRX8 168 aa1.31□□□□□ -2.2
C11orf88-204ENST00000529661 LINC01600Q96MT4 127 aa1.31□□□□□ -2.2
C11orf88-204ENST00000529661 S100A13Q99584 98 aa1.31□□□□□ -2.2
C11orf88-204ENST00000529661 ZNF815PA8K554 130 aa1.3□□□□□ -2.2
C11orf88-204ENST00000529661 ZNF720Q7Z2F6 126 aa1.3□□□□□ -2.2
C11orf88-204ENST00000529661 LINC00472Q9H8W2 130 aa1.3□□□□□ -2.2
C11orf88-204ENST00000529661 A0A1B0GWA3 101 aa1.29□□□□□ -2.2
C11orf88-204ENST00000529661 HMGN3Q15651 99 aa1.29□□□□□ -2.2
C11orf88-204ENST00000529661 LINC00846Q9NV44 126 aa1.29□□□□□ -2.2
C11orf88-204ENST00000529661 TMEM131LA2VDJ0 1609 aa1.29□□□□□ -2.2
C11orf88-204ENST00000529661 G3V318 75 aa1.28□□□□□ -2.2
C11orf88-204ENST00000529661 PIN1P1O15428 100 aa1.28□□□□□ -2.2
C11orf88-204ENST00000529661 SPINT3P49223 89 aa1.28□□□□□ -2.2
C11orf88-204ENST00000529661 ETDBQ3ZM63 59 aa1.28□□□□□ -2.2
C11orf88-204ENST00000529661 PROK2Q9HC23 129 aa1.28□□□□□ -2.2
C11orf88-204ENST00000529661 CUX1P39880 1505 aa1.28□□□□□ -2.2
C11orf88-204ENST00000529661 KNDC1Q76NI1 1749 aa1.28□□□□□ -2.2
C11orf88-204ENST00000529661 RGPD8O14715 1765 aaPredicted RBP1.28□□□□□ -2.2
C11orf88-204ENST00000529661 RGPD5Q99666 1765 aa1.28□□□□□ -2.2
C11orf88-204ENST00000529661 PAPPA2Q9BXP8 1791 aa1.27□□□□□ -2.21
C11orf88-204ENST00000529661 C5P01031 1676 aa1.27□□□□□ -2.21
C11orf88-204ENST00000529661 PTPN23Q9H3S7 1636 aa1.27□□□□□ -2.21
C11orf88-204ENST00000529661 C7orf77A4D0Y5 90 aa1.27□□□□□ -2.21
C11orf88-204ENST00000529661 F8WEM9 126 aa1.27□□□□□ -2.21
C11orf88-204ENST00000529661 M0R3E3 92 aa1.27□□□□□ -2.21
C11orf88-204ENST00000529661 GCHFRP30047 84 aa1.27□□□□□ -2.21
C11orf88-204ENST00000529661 SNRPFP62306 86 aaKnown RBP1.27□□□□□ -2.21
C11orf88-204ENST00000529661 ST20Q9HBF5 79 aa1.27□□□□□ -2.21
C11orf88-204ENST00000529661 TARBP1Q13395 1621 aaKnown RBP1.26□□□□□ -2.21
C11orf88-204ENST00000529661 ALKQ9UM73 1620 aa1.26□□□□□ -2.21
C11orf88-204ENST00000529661 KCPQ6ZWJ8 1503 aa1.26□□□□□ -2.21
C11orf88-204ENST00000529661 AHCTF1Q8WYP5 2266 aa1.26□□□□□ -2.21
C11orf88-204ENST00000529661 ARMS2P0C7Q2 107 aa1.26□□□□□ -2.21
C11orf88-204ENST00000529661 NMSQ5H8A3 153 aa1.26□□□□□ -2.21
C11orf88-204ENST00000529661 TMEM263Q8WUH6 116 aaKnown RBP1.26□□□□□ -2.21
C11orf88-204ENST00000529661 PRR15LQ9BU68 103 aa1.26□□□□□ -2.21
C11orf88-204ENST00000529661 SPCS1Q9Y6A9 102 aa1.26□□□□□ -2.21
C11orf88-204ENST00000529661 ZFHX3Q15911 3703 aa1.26□□□□□ -2.21
C11orf88-204ENST00000529661 PPRC1Q5VV67 1664 aaKnown RBP1.26□□□□□ -2.21
C11orf88-204ENST00000529661 CFAP74Q9C0B2 1584 aa1.25□□□□□ -2.21
C11orf88-204ENST00000529661 HMGN2P05204 90 aaKnown RBP1.25□□□□□ -2.21
C11orf88-204ENST00000529661 ACYP1P07311 99 aa1.25□□□□□ -2.21
C11orf88-204ENST00000529661 ADIRFQ15847 76 aa1.25□□□□□ -2.21
C11orf88-204ENST00000529661 ALKAL2Q6UX46 152 aa1.25□□□□□ -2.21
C11orf88-204ENST00000529661 LTN1O94822 1766 aa1.25□□□□□ -2.21
C11orf88-204ENST00000529661 ASXL3Q9C0F0 2248 aa1.25□□□□□ -2.21
C11orf88-204ENST00000529661 PKD1L3Q7Z443 1732 aa1.25□□□□□ -2.21
C11orf88-204ENST00000529661 NEXMIFQ5QGS0 1516 aa1.25□□□□□ -2.21
C11orf88-204ENST00000529661 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP1.25□□□□□ -2.21
C11orf88-204ENST00000529661 LRRC9Q6ZRR7 1453 aa1.24□□□□□ -2.21
C11orf88-204ENST00000529661 RGPD2P0DJD1 1756 aa1.24□□□□□ -2.21
C11orf88-204ENST00000529661 XRN1Q8IZH2 1706 aaKnown RBP1.24□□□□□ -2.21
C11orf88-204ENST00000529661 KANTRA0A1W2PQU2 76 aa1.24□□□□□ -2.21
C11orf88-204ENST00000529661 LINC00643Q86TS7 51 aa1.24□□□□□ -2.21
C11orf88-204ENST00000529661 PSENENQ9NZ42 101 aa1.24□□□□□ -2.21
C11orf88-204ENST00000529661 JMJD1CQ15652 2540 aa1.24□□□□□ -2.21
C11orf88-204ENST00000529661 A0A087WVE0 104 aa1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms