RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 C9orf153Q5TBE3 101 aa3.23□□□□□ -1.89
PCF11-202ENST00000528336 ATP11AUNQ6ZP68 121 aa3.23□□□□□ -1.89
PCF11-202ENST00000528336 SVBPQ8N300 66 aa3.23□□□□□ -1.89
PCF11-202ENST00000528336 OR4X2Q8NGF9 303 aa3.23□□□□□ -1.89
PCF11-202ENST00000528336 OR8B3Q8NGG8 313 aa3.23□□□□□ -1.89
PCF11-202ENST00000528336 CLEC2BQ92478 149 aa3.23□□□□□ -1.89
PCF11-202ENST00000528336 LSM10Q969L4 123 aaKnown RBP3.23□□□□□ -1.89
PCF11-202ENST00000528336 GAFA1Q96PS6 74 aa3.23□□□□□ -1.89
PCF11-202ENST00000528336 OR8B2Q96RD0 313 aa3.23□□□□□ -1.89
PCF11-202ENST00000528336 S100A13Q99584 98 aa3.23□□□□□ -1.89
PCF11-202ENST00000528336 RETNLBQ9BQ08 111 aa3.23□□□□□ -1.89
PCF11-202ENST00000528336 HIVEP2P31629 2446 aa3.23□□□□□ -1.89
PCF11-202ENST00000528336 ABCA1O95477 2261 aa3.23□□□□□ -1.89
PCF11-202ENST00000528336 NSD1Q96L73 2696 aaPredicted RBP3.23□□□□□ -1.89
PCF11-202ENST00000528336 VPS13CQ709C8 3753 aa3.23□□□□□ -1.89
PCF11-202ENST00000528336 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.22□□□□□ -1.894e-7■■■■□ 23.1
PCF11-202ENST00000528336 SONP18583 2426 aaKnown RBP3.22□□□□□ -1.89
PCF11-202ENST00000528336 GNRH2O43555 120 aa3.22□□□□□ -1.89
PCF11-202ENST00000528336 TFF1P04155 84 aa3.22□□□□□ -1.89
PCF11-202ENST00000528336 CAV3P56539 151 aa3.22□□□□□ -1.89
PCF11-202ENST00000528336 KRTAP10-10P60014 251 aa3.22□□□□□ -1.89
PCF11-202ENST00000528336 KRTAP10-1P60331 282 aa3.22□□□□□ -1.89
PCF11-202ENST00000528336 ROMO1P60602 79 aa3.22□□□□□ -1.89
PCF11-202ENST00000528336 MPV17LQ2QL34 196 aa3.22□□□□□ -1.89
PCF11-202ENST00000528336 MIC13Q5XKP0 118 aa3.22□□□□□ -1.89
PCF11-202ENST00000528336 Q6ZQT0 140 aa3.22□□□□□ -1.89
PCF11-202ENST00000528336 FP248Q71RG6 208 aaPredicted RBP3.22□□□□□ -1.89
PCF11-202ENST00000528336 AQP10Q96PS8 301 aa3.22□□□□□ -1.89
PCF11-202ENST00000528336 CST11Q9H112 138 aa3.22□□□□□ -1.89
PCF11-202ENST00000528336 TIMM9Q9Y5J7 89 aa3.22□□□□□ -1.89
PCF11-202ENST00000528336 S4R3C0 116 aa3.22□□□□□ -1.89
PCF11-202ENST00000528336 ZNF469Q96JG9 3925 aaPredicted RBP3.22□□□□□ -1.89
PCF11-202ENST00000528336 ABCA2Q9BZC7 2435 aa3.22□□□□□ -1.89
PCF11-202ENST00000528336 CHD3Q12873 2000 aaKnown RBP3.22□□□□□ -1.89
PCF11-202ENST00000528336 NAV3Q8IVL0 2385 aa3.21□□□□□ -1.9
PCF11-202ENST00000528336 IGHV3OR16-8A0A075B7F1 116 aa3.21□□□□□ -1.9
PCF11-202ENST00000528336 TMEM14DPA8MWL7 114 aa3.21□□□□□ -1.9
PCF11-202ENST00000528336 OOSP1A8MZH6 123 aa3.21□□□□□ -1.9
PCF11-202ENST00000528336 TRACP01848 142 aa3.21□□□□□ -1.9
PCF11-202ENST00000528336 UBA52P62987 128 aaKnown RBP3.21□□□□□ -1.9
PCF11-202ENST00000528336 PIGYQ3MUY2 71 aa3.21□□□□□ -1.9
PCF11-202ENST00000528336 Q8N814 137 aa3.21□□□□□ -1.9
PCF11-202ENST00000528336 HYLS1Q96M11 299 aa3.21□□□□□ -1.9
PCF11-202ENST00000528336 SMR3AQ99954 134 aa3.21□□□□□ -1.9
PCF11-202ENST00000528336 CR1P17927 2039 aa3.2□□□□□ -1.9
PCF11-202ENST00000528336 SETD2Q9BYW2 2564 aaPredicted RBP3.2□□□□□ -1.9
PCF11-202ENST00000528336 C11orf86A6NJI1 115 aa3.2□□□□□ -1.9
PCF11-202ENST00000528336 ZNF736B4DX44 427 aaPredicted RBP3.2□□□□□ -1.9
PCF11-202ENST00000528336 C17orf112F2Z3M2 114 aa3.2□□□□□ -1.9
PCF11-202ENST00000528336 M0R1W7 72 aa3.2□□□□□ -1.9
PCF11-202ENST00000528336 IL4P05112 153 aa3.2□□□□□ -1.9
PCF11-202ENST00000528336 CIRBPQ14011 172 aaKnown RBP3.2□□□□□ -1.9
PCF11-202ENST00000528336 ESRGQ1W209 222 aa3.2□□□□□ -1.9
PCF11-202ENST00000528336 LGALSLQ3ZCW2 172 aaPredicted RBP3.2□□□□□ -1.9
PCF11-202ENST00000528336 RAB37Q96AX2 223 aa3.2□□□□□ -1.9
PCF11-202ENST00000528336 SLC50A1Q9BRV3 221 aa3.2□□□□□ -1.9
PCF11-202ENST00000528336 FN1P02751 2386 aaKnown RBP3.2□□□□□ -1.9
PCF11-202ENST00000528336 NF1P21359 2839 aa3.2□□□□□ -1.9
PCF11-202ENST00000528336 NIPBLQ6KC79 2804 aaeCLIP3.2□□□□□ -1.9
PCF11-202ENST00000528336 JMJD1CQ15652 2540 aa3.19□□□□□ -1.9
PCF11-202ENST00000528336 TMEM30CPA0ZSE6 113 aa3.19□□□□□ -1.9
PCF11-202ENST00000528336 DEFA4P12838 97 aa3.19□□□□□ -1.9
PCF11-202ENST00000528336 CKS2P33552 79 aa3.19□□□□□ -1.9
PCF11-202ENST00000528336 ETV6P41212 452 aa3.19□□□□□ -1.9
PCF11-202ENST00000528336 EDDM3BP56851 147 aa3.19□□□□□ -1.9
PCF11-202ENST00000528336 KPRPQ5T749 579 aaPredicted RBP3.19□□□□□ -1.9
PCF11-202ENST00000528336 IGFL1Q6UW32 110 aa3.19□□□□□ -1.9
PCF11-202ENST00000528336 ATP6V0E2Q8NHE4 81 aa3.19□□□□□ -1.9
PCF11-202ENST00000528336 ABRACLQ9P1F3 81 aa3.19□□□□□ -1.9
PCF11-202ENST00000528336 LINC00312Q9Y6C7 94 aa3.19□□□□□ -1.9
PCF11-202ENST00000528336 LY96Q9Y6Y9 160 aa3.19□□□□□ -1.9
PCF11-202ENST00000528336 WNK2Q9Y3S1 2297 aa3.19□□□□□ -1.9
PCF11-202ENST00000528336 ANK3Q12955 4377 aaKnown RBP3.19□□□□□ -1.9
PCF11-202ENST00000528336 MXRA5Q9NR99 2828 aa3.18□□□□□ -1.9
PCF11-202ENST00000528336 SMIM31A0A1B0GVY4 71 aa3.18□□□□□ -1.9
PCF11-202ENST00000528336 hDV103S1A0JD37 113 aa3.18□□□□□ -1.9
PCF11-202ENST00000528336 COLCA2A8K830 154 aa3.18□□□□□ -1.9
PCF11-202ENST00000528336 IGLC1P0CG04 106 aa3.18□□□□□ -1.9
PCF11-202ENST00000528336 CCL3L1P16619 93 aa3.18□□□□□ -1.9
PCF11-202ENST00000528336 ZNF846Q147U1 533 aa3.18□□□□□ -1.9
PCF11-202ENST00000528336 HEPN1Q6WQI6 88 aa3.18□□□□□ -1.9
PCF11-202ENST00000528336 C6orf201Q7Z4U5 140 aa3.18□□□□□ -1.9
PCF11-202ENST00000528336 VMO1Q7Z5L0 202 aa3.18□□□□□ -1.9
PCF11-202ENST00000528336 ARHGAP5-AS1Q96IT6 56 aa3.18□□□□□ -1.9
PCF11-202ENST00000528336 ATG5Q9H1Y0 275 aa3.18□□□□□ -1.9
PCF11-202ENST00000528336 HHLA3Q9XRX5 114 aa3.18□□□□□ -1.9
PCF11-202ENST00000528336 IGKV2D-26A0A0A0MRZ7 120 aa3.17□□□□□ -1.9
PCF11-202ENST00000528336 TRAV40A0A0B4J280 105 aa3.17□□□□□ -1.9
PCF11-202ENST00000528336 HCP5Q6MZN7 132 aa3.17□□□□□ -1.9
PCF11-202ENST00000528336 OR2T35Q8NGX2 323 aa3.17□□□□□ -1.9
PCF11-202ENST00000528336 VSTM2AQ8TAG5 236 aa3.17□□□□□ -1.9
PCF11-202ENST00000528336 S100A16Q96FQ6 103 aaKnown RBP3.17□□□□□ -1.9
PCF11-202ENST00000528336 PRO1933Q9H354 126 aa3.17□□□□□ -1.9
PCF11-202ENST00000528336 MINOS1-NBL1R4GNA1 71 aa3.17□□□□□ -1.9
PCF11-202ENST00000528336 C2CD3Q4AC94 2353 aa3.17□□□□□ -1.9
PCF11-202ENST00000528336 ATRQ13535 2644 aa3.17□□□□□ -1.9
PCF11-202ENST00000528336 ARHGAP32A7KAX9 2087 aa3.16□□□□□ -1.9
PCF11-202ENST00000528336 SVEP1Q4LDE5 3571 aa3.16□□□□□ -1.9
PCF11-202ENST00000528336 IGLV2-18A0A075B6J9 118 aa3.16□□□□□ -1.9
PCF11-202ENST00000528336 MUC21A0A0G2JKD1 596 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 133.8 ms