RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 DEFB104AQ8WTQ1 72 aa5.18□□□□□ -1.58
LIMCH1-222ENST00000515847 CHCHD10Q8WYQ3 142 aaPredicted RBP5.18□□□□□ -1.58
LIMCH1-222ENST00000515847 A0A087WTM6 91 aa5.17□□□□□ -1.58
LIMCH1-222ENST00000515847 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.17□□□□□ -1.58
LIMCH1-222ENST00000515847 TRAV13-1A0A0B4J241 112 aa5.17□□□□□ -1.58
LIMCH1-222ENST00000515847 LINC00959A0A1B0GUT2 108 aa5.17□□□□□ -1.58
LIMCH1-222ENST00000515847 COX7A2LO14548 114 aa5.17□□□□□ -1.58
LIMCH1-222ENST00000515847 IGLV10-54A0A075B6I4 117 aa5.16□□□□□ -1.58
LIMCH1-222ENST00000515847 IGLV4-3A0A075B6K6 122 aa5.16□□□□□ -1.58
LIMCH1-222ENST00000515847 IGHV1-58A0A0C4DH39 117 aa5.16□□□□□ -1.58
LIMCH1-222ENST00000515847 A0A1B0GVY2 172 aa5.16□□□□□ -1.58
LIMCH1-222ENST00000515847 GAGE12HA6NDE8 117 aa5.16□□□□□ -1.58
LIMCH1-222ENST00000515847 XCL1P47992 114 aa5.16□□□□□ -1.58
LIMCH1-222ENST00000515847 HERVK_113P63121 156 aa5.16□□□□□ -1.58
LIMCH1-222ENST00000515847 Q8N814 137 aa5.16□□□□□ -1.58
LIMCH1-222ENST00000515847 PACRGQ96M98 296 aaPredicted RBP5.16□□□□□ -1.58
LIMCH1-222ENST00000515847 GEMIN7Q9H840 131 aaKnown RBP5.16□□□□□ -1.58
LIMCH1-222ENST00000515847 HSPB8Q9UJY1 196 aa5.16□□□□□ -1.58
LIMCH1-222ENST00000515847 BIRC6Q9NR09 4857 aa5.15□□□□□ -1.58
LIMCH1-222ENST00000515847 IGLV5-52A0A0A0MRZ9 124 aa5.15□□□□□ -1.59
LIMCH1-222ENST00000515847 IGIPA6NJ69 53 aa5.15□□□□□ -1.59
LIMCH1-222ENST00000515847 SCO1O75880 301 aa5.15□□□□□ -1.59
LIMCH1-222ENST00000515847 PMVKQ15126 192 aa5.15□□□□□ -1.59
LIMCH1-222ENST00000515847 LINC01561Q8N1V8 128 aa5.15□□□□□ -1.59
LIMCH1-222ENST00000515847 DNAH5Q8TE73 4624 aa5.15□□□□□ -1.59
LIMCH1-222ENST00000515847 USP17L23D6RBM5 183 aa5.14□□□□□ -1.59
LIMCH1-222ENST00000515847 F8WDY8 70 aa5.14□□□□□ -1.59
LIMCH1-222ENST00000515847 H3BRM9 83 aa5.14□□□□□ -1.59
LIMCH1-222ENST00000515847 ZNF561-AS1K7EIQ3 104 aa5.14□□□□□ -1.59
LIMCH1-222ENST00000515847 LEPROTL1O95214 131 aa5.14□□□□□ -1.59
LIMCH1-222ENST00000515847 OR10D4PQ8NGN7 298 aa5.14□□□□□ -1.59
LIMCH1-222ENST00000515847 AMELXQ99217 191 aa5.14□□□□□ -1.59
LIMCH1-222ENST00000515847 LRP1BQ9NZR2 4599 aa5.13□□□□□ -1.59
LIMCH1-222ENST00000515847 hDV102S1A0JD36 115 aa5.13□□□□□ -1.59
LIMCH1-222ENST00000515847 LRCOL1A6NCL2 159 aa5.13□□□□□ -1.59
LIMCH1-222ENST00000515847 C16orf90A8MZG2 172 aa5.13□□□□□ -1.59
LIMCH1-222ENST00000515847 SERF1AO75920 110 aa5.13□□□□□ -1.59
LIMCH1-222ENST00000515847 UBE2D1P51668 147 aa5.13□□□□□ -1.59
LIMCH1-222ENST00000515847 AKR1D1P51857 326 aa5.13□□□□□ -1.59
LIMCH1-222ENST00000515847 FOXI1Q12951 378 aa5.13□□□□□ -1.59
LIMCH1-222ENST00000515847 RNASE13Q5GAN3 156 aaKnown RBP5.13□□□□□ -1.59
LIMCH1-222ENST00000515847 SPATA12Q7Z6I5 190 aa5.13□□□□□ -1.59
LIMCH1-222ENST00000515847 BAALCQ8WXS3 180 aa5.13□□□□□ -1.59
LIMCH1-222ENST00000515847 KRTAP4-11Q9BYQ6 195 aa5.13□□□□□ -1.59
LIMCH1-222ENST00000515847 GVQW2A0A096LPI5 108 aaPredicted RBP5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 TRAV12-1A0A0B4J245 112 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 TINCRA0A1B0GVN0 87 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 HIST1H2BKO60814 126 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 S100A6P06703 90 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 HIST1H2BJP06899 126 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 PRSS1P07477 247 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 PRSS2P07478 247 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 HIST1H2BOP23527 126 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 HIST1H2BBP33778 126 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 NDUFA6P56556 154 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 HIST1H2BDP58876 126 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 HIST1H2BCP62807 126 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 HIST2H2BEQ16778 126 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 PDZD11Q5EBL8 140 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 SFTA2Q6UW10 78 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 FAM19A3Q7Z5A8 133 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 HIST1H2BHQ93079 126 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 IFI27L1Q96BM0 104 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 HIST1H2BNQ99877 126 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 HIST1H2BMQ99879 126 aa5.12□□□□□ -1.59
LIMCH1-222ENST00000515847 A0A087WZ39 114 aa5.11□□□□□ -1.59
LIMCH1-222ENST00000515847 LECT2O14960 151 aa5.11□□□□□ -1.59
LIMCH1-222ENST00000515847 CXCL5P42830 114 aa5.11□□□□□ -1.59
LIMCH1-222ENST00000515847 CNBPP62633 177 aaKnown RBP5.11□□□□□ -1.59
LIMCH1-222ENST00000515847 SPAG11BQ08648 103 aa5.11□□□□□ -1.59
LIMCH1-222ENST00000515847 LINC00469Q8N7U9 141 aa5.11□□□□□ -1.59
LIMCH1-222ENST00000515847 MAP1LC3CQ9BXW4 147 aa5.11□□□□□ -1.59
LIMCH1-222ENST00000515847 CST9LQ9H4G1 147 aa5.11□□□□□ -1.59
LIMCH1-222ENST00000515847 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.1□□□□□ -1.59
LIMCH1-222ENST00000515847 IGHV3OR16-9A0A0B4J2B5 98 aa5.1□□□□□ -1.59
LIMCH1-222ENST00000515847 C20orf202A1L168 122 aa5.1□□□□□ -1.59
LIMCH1-222ENST00000515847 GCSHP23434 173 aa5.1□□□□□ -1.59
LIMCH1-222ENST00000515847 PLNP26678 52 aa5.1□□□□□ -1.59
LIMCH1-222ENST00000515847 PMCHL1Q16048 86 aa5.1□□□□□ -1.59
LIMCH1-222ENST00000515847 COA6Q5JTJ3 125 aaKnown RBP5.1□□□□□ -1.59
LIMCH1-222ENST00000515847 LINC00242Q5T6M2 205 aa5.1□□□□□ -1.59
LIMCH1-222ENST00000515847 KRTAP26-1Q6PEX3 210 aa5.1□□□□□ -1.59
LIMCH1-222ENST00000515847 ORAOV1Q8WV07 137 aa5.1□□□□□ -1.59
LIMCH1-222ENST00000515847 URB1-AS1Q96HZ7 61 aa5.1□□□□□ -1.59
LIMCH1-222ENST00000515847 C2orf48Q96LS8 159 aa5.1□□□□□ -1.59
LIMCH1-222ENST00000515847 CHAC1Q9BUX1 264 aa5.1□□□□□ -1.59
LIMCH1-222ENST00000515847 IGHV3-64A0A075B6Q5 118 aa5.09□□□□□ -1.59
LIMCH1-222ENST00000515847 A0A096LNJ9 63 aa5.09□□□□□ -1.59
LIMCH1-222ENST00000515847 F8VRH5 84 aa5.09□□□□□ -1.59
LIMCH1-222ENST00000515847 NDUFA1O15239 70 aa5.09□□□□□ -1.59
LIMCH1-222ENST00000515847 IGLC3P0DOY3 106 aa5.09□□□□□ -1.59
LIMCH1-222ENST00000515847 S100A2P29034 98 aa5.09□□□□□ -1.59
LIMCH1-222ENST00000515847 FUSP35637 526 aaKnown RBP eCLIP5.09□□□□□ -1.59
LIMCH1-222ENST00000515847 KRTAP10-2P60368 255 aa5.09□□□□□ -1.59
LIMCH1-222ENST00000515847 HERVK_113P61574 105 aa5.09□□□□□ -1.59
LIMCH1-222ENST00000515847 LINC00173Q6ZV60 143 aa5.09□□□□□ -1.59
LIMCH1-222ENST00000515847 C5orf38Q86SI9 138 aa5.09□□□□□ -1.59
LIMCH1-222ENST00000515847 CARD19Q96LW7 228 aa5.09□□□□□ -1.59
LIMCH1-222ENST00000515847 CAMK2N2Q96S95 79 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms