RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 LINC00467Q9BRT7 94 aa9.64□□□□□ -0.87
TCOF1-213ENST00000514442 CDK2AP2O75956 126 aa9.64□□□□□ -0.87
TCOF1-213ENST00000514442 SERP1Q9Y6X1 66 aa9.64□□□□□ -0.87
TCOF1-213ENST00000514442 CRYGAP11844 174 aa9.63□□□□□ -0.87
TCOF1-213ENST00000514442 CRYGDP07320 174 aa9.63□□□□□ -0.87
TCOF1-213ENST00000514442 MPLKIPQ8TAP9 179 aa9.63□□□□□ -0.87
TCOF1-213ENST00000514442 ABCA12Q86UK0 2595 aa9.62□□□□□ -0.87
TCOF1-213ENST00000514442 ADAMTS20P59510 1910 aa9.62□□□□□ -0.87
TCOF1-213ENST00000514442 ATP5EP56381 51 aaPredicted RBP9.62□□□□□ -0.87
TCOF1-213ENST00000514442 SMIM26A0A096LP01 95 aa9.62□□□□□ -0.87
TCOF1-213ENST00000514442 SPAG11BQ08648 103 aa9.62□□□□□ -0.87
TCOF1-213ENST00000514442 TET2Q6N021 2002 aaPredicted RBP9.61□□□□□ -0.87
TCOF1-213ENST00000514442 HILS1P60008 231 aa9.61□□□□□ -0.87
TCOF1-213ENST00000514442 MRPS36P82909 103 aaKnown RBP9.61□□□□□ -0.87
TCOF1-213ENST00000514442 PIK3CD-AS1Q5SR53 167 aa9.61□□□□□ -0.87
TCOF1-213ENST00000514442 C11orf45Q8TAV5 145 aa9.61□□□□□ -0.87
TCOF1-213ENST00000514442 USP9YO00507 2555 aaPredicted RBP9.61□□□□□ -0.87
TCOF1-213ENST00000514442 DCANP1Q8TF63 244 aa9.61□□□□□ -0.87
TCOF1-213ENST00000514442 BBC3Q96PG8 261 aaPredicted RBP9.6□□□□□ -0.87
TCOF1-213ENST00000514442 LINC00269Q8N2A0 174 aa9.6□□□□□ -0.87
TCOF1-213ENST00000514442 AGRNO00468 2067 aa9.6□□□□□ -0.87
TCOF1-213ENST00000514442 SETD2Q9BYW2 2564 aaPredicted RBP9.6□□□□□ -0.87
TCOF1-213ENST00000514442 POM121L12Q8N7R1 296 aa9.6□□□□□ -0.87
TCOF1-213ENST00000514442 A0A087WVE0 104 aa9.59□□□□□ -0.87
TCOF1-213ENST00000514442 NDUFC1O43677 76 aa9.59□□□□□ -0.87
TCOF1-213ENST00000514442 SLPIP03973 132 aa9.59□□□□□ -0.87
TCOF1-213ENST00000514442 H3BQ85 93 aa9.59□□□□□ -0.87
TCOF1-213ENST00000514442 ADAMTSL4-AS1Q5T5F5 129 aa9.59□□□□□ -0.87
TCOF1-213ENST00000514442 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.59□□□□□ -0.87
TCOF1-213ENST00000514442 HIGD2BQ4VC39 106 aa9.58□□□□□ -0.88
TCOF1-213ENST00000514442 ZFYVE26Q68DK2 2539 aa9.58□□□□□ -0.88
TCOF1-213ENST00000514442 PRO0628Q9UI54 55 aa9.57□□□□□ -0.88
TCOF1-213ENST00000514442 KLLNB2CW77 178 aa9.57□□□□□ -0.88
TCOF1-213ENST00000514442 SNURFQ9Y675 71 aa9.57□□□□□ -0.88
TCOF1-213ENST00000514442 ZNF462Q96JM2 2506 aa9.57□□□□□ -0.88
TCOF1-213ENST00000514442 PDE6GP18545 87 aa9.57□□□□□ -0.88
TCOF1-213ENST00000514442 ETDCA0A1B0GVM5 59 aa9.57□□□□□ -0.88
TCOF1-213ENST00000514442 C5orf42Q9H799 3197 aa9.56□□□□□ -0.88
TCOF1-213ENST00000514442 LYRM9A8MSI8 78 aa9.56□□□□□ -0.88
TCOF1-213ENST00000514442 REG3AQ06141 175 aa9.56□□□□□ -0.88
TCOF1-213ENST00000514442 C4orf26Q17RF5 130 aa9.56□□□□□ -0.88
TCOF1-213ENST00000514442 MRGPRG-AS1Q2M3A8 158 aa9.56□□□□□ -0.88
TCOF1-213ENST00000514442 LOC100131303A0A0U1RQF7 123 aa9.55□□□□□ -0.88
TCOF1-213ENST00000514442 WFDC9Q8NEX5 89 aa9.55□□□□□ -0.88
TCOF1-213ENST00000514442 ZNF580Q9UK33 172 aa9.55□□□□□ -0.88
TCOF1-213ENST00000514442 DEFB131BA0A096LNP1 70 aa9.54□□□□□ -0.88
TCOF1-213ENST00000514442 UBE2D4Q9Y2X8 147 aa9.54□□□□□ -0.88
TCOF1-213ENST00000514442 CHD7Q9P2D1 2997 aa9.54□□□□□ -0.88
TCOF1-213ENST00000514442 IGHV4-28A0A0C4DH34 117 aa9.54□□□□□ -0.88
TCOF1-213ENST00000514442 FUSP35637 526 aaKnown RBP eCLIP9.54□□□□□ -0.88
TCOF1-213ENST00000514442 PRB2P02812 416 aaPredicted RBP9.54□□□□□ -0.88
TCOF1-213ENST00000514442 KIR2DL5BQ8NHK3 375 aa9.53□□□□□ -0.88
TCOF1-213ENST00000514442 CCKP06307 115 aa9.53□□□□□ -0.88
TCOF1-213ENST00000514442 C9orf85Q96MD7 179 aa9.53□□□□□ -0.88
TCOF1-213ENST00000514442 SMIM11BQ8TCY0 68 aa9.53□□□□□ -0.88
TCOF1-213ENST00000514442 CHCHD10Q8WYQ3 142 aaPredicted RBP9.53□□□□□ -0.88
TCOF1-213ENST00000514442 TRAV7A0A075B6U4 112 aa9.52□□□□□ -0.88
TCOF1-213ENST00000514442 TRBV6-8A0A0A6YYG3 113 aa9.52□□□□□ -0.89
TCOF1-213ENST00000514442 ODF3L2Q3SX64 289 aa9.52□□□□□ -0.89
TCOF1-213ENST00000514442 OXLD1Q5BKU9 147 aa9.52□□□□□ -0.89
TCOF1-213ENST00000514442 NREPQ16612 68 aa9.51□□□□□ -0.89
TCOF1-213ENST00000514442 HTTP42858 3142 aa9.51□□□□□ -0.89
TCOF1-213ENST00000514442 MIFP14174 115 aa9.51□□□□□ -0.89
TCOF1-213ENST00000514442 LRRK2Q5S007 2527 aa9.51□□□□□ -0.89
TCOF1-213ENST00000514442 TRBV6-4A0A1B0GX49 114 aa9.51□□□□□ -0.89
TCOF1-213ENST00000514442 RPL28P46779 137 aaKnown RBP9.51□□□□□ -0.89
TCOF1-213ENST00000514442 PRRC2CQ9Y520 2896 aaKnown RBP9.5□□□□□ -0.89
TCOF1-213ENST00000514442 IBA57-AS1B1ANH7 110 aa9.5□□□□□ -0.89
TCOF1-213ENST00000514442 AMELXQ99217 191 aa9.5□□□□□ -0.89
TCOF1-213ENST00000514442 FN1P02751 2386 aaKnown RBP9.5□□□□□ -0.89
TCOF1-213ENST00000514442 POLQO75417 2590 aa9.5□□□□□ -0.89
TCOF1-213ENST00000514442 MRPL55Q7Z7F7 128 aaKnown RBP9.49□□□□□ -0.89
TCOF1-213ENST00000514442 IGKV2-24A0A0C4DH68 120 aa9.49□□□□□ -0.89
TCOF1-213ENST00000514442 LINC00846Q9NV44 126 aa9.48□□□□□ -0.89
TCOF1-213ENST00000514442 PCSK5Q92824 1860 aa9.47□□□□□ -0.89
TCOF1-213ENST00000514442 A0A087WYN8 130 aa9.47□□□□□ -0.89
TCOF1-213ENST00000514442 SCXQ7RTU7 201 aa9.46□□□□□ -0.9
TCOF1-213ENST00000514442 DIRC1Q969H9 104 aa9.46□□□□□ -0.9
TCOF1-213ENST00000514442 RANBP2P49792 3224 aaKnown RBP9.45□□□□□ -0.9
TCOF1-213ENST00000514442 IGHV4-30-4P0DP06 118 aa9.44□□□□□ -0.9
TCOF1-213ENST00000514442 UBE2AP49459 152 aa9.44□□□□□ -0.9
TCOF1-213ENST00000514442 SEC61GP60059 68 aa9.44□□□□□ -0.9
TCOF1-213ENST00000514442 KIF25-AS1Q9Y6Z4 181 aa9.44□□□□□ -0.9
TCOF1-213ENST00000514442 MTORP42345 2549 aa9.44□□□□□ -0.9
TCOF1-213ENST00000514442 XAGE1AQ9HD64 81 aa9.43□□□□□ -0.9
TCOF1-213ENST00000514442 PKD1L2Q7Z442 2459 aa9.43□□□□□ -0.9
TCOF1-213ENST00000514442 KPRPQ5T749 579 aaPredicted RBP9.43□□□□□ -0.9
TCOF1-213ENST00000514442 FASNP49327 2511 aaKnown RBP9.42□□□□□ -0.9
TCOF1-213ENST00000514442 SMCR5Q8TEV8 140 aa9.42□□□□□ -0.9
TCOF1-213ENST00000514442 IGLV1-51P01701 117 aa9.42□□□□□ -0.9
TCOF1-213ENST00000514442 RETNQ9HD89 108 aa9.42□□□□□ -0.9
TCOF1-213ENST00000514442 LINC00242Q5T6M2 205 aa9.42□□□□□ -0.9
TCOF1-213ENST00000514442 CHCHD7Q9BUK0 85 aa9.42□□□□□ -0.9
TCOF1-213ENST00000514442 SMIM1B2RUZ4 78 aa9.42□□□□□ -0.9
TCOF1-213ENST00000514442 MKI67P46013 3256 aaKnown RBP9.41□□□□□ -0.9
TCOF1-213ENST00000514442 FAM19A1Q7Z5A9 133 aa9.41□□□□□ -0.9
TCOF1-213ENST00000514442 MP68P56378 58 aa9.4□□□□□ -0.9
TCOF1-213ENST00000514442 NANOS2P60321 138 aaKnown RBP9.4□□□□□ -0.9
TCOF1-213ENST00000514442 COX6A2Q02221 97 aa9.4□□□□□ -0.9
TCOF1-213ENST00000514442 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms