RNA–Protein interactions for RNA: ENST00000512711.1

PDGFC-208, Transcript of platelet derived growth factor C, humanhuman

TSL 3

Gene PDGFC, Length 522 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-208ENST00000512711 SBF2Q86WG5 1849 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 ZMYM4Q5VZL5 1548 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 UBR1Q8IWV7 1749 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 BORCS7-ASMTA0A0B4J1R7 106 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 TRAV2A0A0B4J234 112 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 TRAV12-3A0A0B4J271 114 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 LINC01546A6NGU7 62 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 F8WEM9 126 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 BCE1O60756 84 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 FAM107AO95990 144 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 SMIM6P0DI80 62 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 NEFHP12036 1026 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 EDDM3BP56851 147 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 DCDP81605 110 aaKnown RBP-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 TFAMQ00059 246 aaKnown RBP-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 THEM6Q8WUY1 208 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 AMELXQ99217 191 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 HOPXQ9BPY8 73 aaPredicted RBP-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 FXYD6Q9H0Q3 95 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 GID8Q9NWU2 228 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 SCN3BQ9NY72 215 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 CALML5Q9NZT1 146 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 CRIPTQ9P021 101 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 APLNQ9ULZ1 77 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 NCOA2Q15596 1464 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 PIK3C2BO00750 1634 aa-0.57□□□□□ -2.5
PDGFC-208ENST00000512711 PARP4Q9UKK3 1724 aaKnown RBP-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 KIAA0586Q9BVV6 1533 aa-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 BTAF1O14981 1849 aa-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 PARP14Q460N5 1801 aa-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 E7EQ34 232 aa-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 M0QZ58 72 aa-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 M0R2P5 195 aa-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 TNP1P09430 55 aa-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 RPL7P18124 248 aaKnown RBP-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 POLR2HP52434 150 aaKnown RBP-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 MRPS15P82914 257 aaKnown RBP-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 ALX1Q15699 326 aa-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 CFAP126Q5VTH2 177 aa-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 ATP6V0E2Q8NHE4 81 aa-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 LEAP2Q969E1 77 aa-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 CHMP6Q96FZ7 201 aa-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 UBE2D4Q9Y2X8 147 aa-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 ZCCHC11Q5TAX3 1644 aaKnown RBP-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 RNF17Q9BXT8 1623 aaKnown RBP-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 BAZ1AQ9NRL2 1556 aaPredicted RBP-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 POLR1AO95602 1720 aaPredicted RBP-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 C4AP0C0L4 1744 aa-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 C4BP0C0L5 1744 aa-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 PKD1L3Q7Z443 1732 aa-0.58□□□□□ -2.5
PDGFC-208ENST00000512711 GRIN2AQ12879 1464 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 SHROOM2Q13796 1616 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 RGPD3A6NKT7 1758 aaPredicted RBP-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 MYH7P12883 1935 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 A0A1W2PRE2 83 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 CCDC179H3BU77 68 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 CCL22O00626 93 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 RBP4P02753 201 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 S100A3P33764 101 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 UBE2D1P51668 147 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 CLLU1Q5K131 121 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 TRIQKQ629K1 86 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 C9orf62Q8N4C0 152 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 DEFB123Q8N688 67 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 CCDC115Q96NT0 180 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 WFDC6Q9BQY6 131 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 PRG4Q92954 1404 aaPredicted RBP-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 MED23Q9ULK4 1368 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 TRPM2O94759 1503 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 CLASP1Q7Z460 1538 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 DUOX2Q9NRD8 1548 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 PLCH1Q4KWH8 1693 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 LMO7Q8WWI1 1683 aa-0.59□□□□□ -2.5
PDGFC-208ENST00000512711 A0A1B0GUL6 1792 aa-0.6□□□□□ -2.5
PDGFC-208ENST00000512711 KDM3BQ7LBC6 1761 aa-0.6□□□□□ -2.5
PDGFC-208ENST00000512711 KIAA0556O60303 1618 aa-0.6□□□□□ -2.5
PDGFC-208ENST00000512711 USP32Q8NFA0 1604 aa-0.6□□□□□ -2.5
PDGFC-208ENST00000512711 MRC1P22897 1456 aa-0.6□□□□□ -2.5
PDGFC-208ENST00000512711 ERCC6Q03468 1493 aa-0.6□□□□□ -2.5
PDGFC-208ENST00000512711 ARAP1Q96P48 1450 aa-0.6□□□□□ -2.5
PDGFC-208ENST00000512711 MRC2Q9UBG0 1479 aa-0.6□□□□□ -2.5
PDGFC-208ENST00000512711 ERCC6L2Q5T890 1561 aa-0.6□□□□□ -2.51
PDGFC-208ENST00000512711 EEA1Q15075 1411 aa-0.6□□□□□ -2.51
PDGFC-208ENST00000512711 TRBV6-1A0A0K0K1D8 114 aa-0.6□□□□□ -2.51
PDGFC-208ENST00000512711 J3KT08 172 aa-0.6□□□□□ -2.51
PDGFC-208ENST00000512711 J3QLW9 94 aa-0.6□□□□□ -2.51
PDGFC-208ENST00000512711 SPINK4O60575 86 aa-0.6□□□□□ -2.51
PDGFC-208ENST00000512711 SMIM24O75264 130 aa-0.6□□□□□ -2.51
PDGFC-208ENST00000512711 MT-ND4LP03901 98 aa-0.6□□□□□ -2.51
PDGFC-208ENST00000512711 MT-ATP8P03928 68 aa-0.6□□□□□ -2.51
PDGFC-208ENST00000512711 PAEPP09466 180 aa-0.6□□□□□ -2.51
PDGFC-208ENST00000512711 SPART-AS1P0CW21 52 aa-0.6□□□□□ -2.51
PDGFC-208ENST00000512711 TMEM78Q5T7P6 136 aa-0.6□□□□□ -2.51
PDGFC-208ENST00000512711 RPL7L1Q6DKI1 246 aaKnown RBP-0.6□□□□□ -2.51
PDGFC-208ENST00000512711 TMEM91Q6ZNR0 172 aa-0.6□□□□□ -2.51
PDGFC-208ENST00000512711 ATP11AUNQ6ZP68 121 aa-0.6□□□□□ -2.51
PDGFC-208ENST00000512711 BAGE3Q86Y29 109 aa-0.6□□□□□ -2.51
PDGFC-208ENST00000512711 MAFIPQ8WZ33 124 aa-0.6□□□□□ -2.51
PDGFC-208ENST00000512711 SPRR4Q96PI1 79 aa-0.6□□□□□ -2.51
PDGFC-208ENST00000512711 BOLA2Q9H3K6 86 aa-0.6□□□□□ -2.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms