RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 Q1RN00 199 aa11.41□□□□□ -0.58
SQSTM1-213ENST00000510187 DGAT2L7PQ6IED9 249 aa11.41□□□□□ -0.58
SQSTM1-213ENST00000510187 DAZ4Q86SG3 579 aaKnown RBP11.41□□□□□ -0.58
SQSTM1-213ENST00000510187 RPL36ALQ969Q0 106 aaKnown RBP11.41□□□□□ -0.58
SQSTM1-213ENST00000510187 DAZ3Q9NR90 486 aaKnown RBP11.41□□□□□ -0.58
SQSTM1-213ENST00000510187 TRGV1A0A0A0MS02 117 aa11.4□□□□□ -0.58
SQSTM1-213ENST00000510187 GIG44P09565 113 aaPredicted RBP11.4□□□□□ -0.58
SQSTM1-213ENST00000510187 CARD19Q96LW7 228 aa11.4□□□□□ -0.58
SQSTM1-213ENST00000510187 SLC25A20O43772 301 aa11.4□□□□□ -0.58
SQSTM1-213ENST00000510187 CDKN2A-AS1Q9UH64 79 aa11.4□□□□□ -0.58
SQSTM1-213ENST00000510187 MGAM2Q2M2H8 2515 aa11.39□□□□□ -0.59
SQSTM1-213ENST00000510187 IGLV5-39A0A0G2JS06 123 aa11.39□□□□□ -0.59
SQSTM1-213ENST00000510187 ADAMTSL4-AS1Q5T5F5 129 aa11.39□□□□□ -0.59
SQSTM1-213ENST00000510187 ANKRD29Q8N6D5 301 aa11.39□□□□□ -0.59
SQSTM1-213ENST00000510187 IGHV3OR16-12A0A075B7B8 117 aa11.38□□□□□ -0.59
SQSTM1-213ENST00000510187 CIDEAO60543 219 aa11.38□□□□□ -0.59
SQSTM1-213ENST00000510187 PRSS2P07478 247 aa11.38□□□□□ -0.59
SQSTM1-213ENST00000510187 CDIP1Q9H305 208 aa11.38□□□□□ -0.59
SQSTM1-213ENST00000510187 C9JAW5 83 aa11.38□□□□□ -0.59
SQSTM1-213ENST00000510187 H7C2G1 150 aa11.38□□□□□ -0.59
SQSTM1-213ENST00000510187 TMEM101Q96IK0 257 aa11.38□□□□□ -0.59
SQSTM1-213ENST00000510187 TRIAP1O43715 76 aa11.37□□□□□ -0.59
SQSTM1-213ENST00000510187 APOC4P55056 127 aa11.37□□□□□ -0.59
SQSTM1-213ENST00000510187 CIRBPQ14011 172 aaKnown RBP11.37□□□□□ -0.59
SQSTM1-213ENST00000510187 LINC01620Q4KN68 170 aa11.37□□□□□ -0.59
SQSTM1-213ENST00000510187 KPRPQ5T749 579 aaPredicted RBP11.37□□□□□ -0.59
SQSTM1-213ENST00000510187 KIR2DL5BQ8NHK3 375 aa11.37□□□□□ -0.59
SQSTM1-213ENST00000510187 ICOSQ9Y6W8 199 aa11.37□□□□□ -0.59
SQSTM1-213ENST00000510187 PRB2P02812 416 aaPredicted RBP11.36□□□□□ -0.59
SQSTM1-213ENST00000510187 LINC00242Q5T6M2 205 aa11.36□□□□□ -0.59
SQSTM1-213ENST00000510187 Q6ZTI0 123 aa11.36□□□□□ -0.59
SQSTM1-213ENST00000510187 COPS9Q8WXC6 57 aa11.36□□□□□ -0.59
SQSTM1-213ENST00000510187 C16orf74Q96GX8 76 aa11.36□□□□□ -0.59
SQSTM1-213ENST00000510187 NOTCH1P46531 2555 aa11.36□□□□□ -0.59
SQSTM1-213ENST00000510187 A8MZ25 164 aa11.35□□□□□ -0.59
SQSTM1-213ENST00000510187 TMEM262E9PQX1 116 aa11.35□□□□□ -0.59
SQSTM1-213ENST00000510187 COX6CP09669 75 aa11.35□□□□□ -0.59
SQSTM1-213ENST00000510187 CSNK1G2-AS1Q8NCQ2 148 aa11.35□□□□□ -0.59
SQSTM1-213ENST00000510187 DNHD1Q96M86 4753 aa11.34□□□□□ -0.59
SQSTM1-213ENST00000510187 TRBV10-2A0A0K0K1G8 114 aa11.34□□□□□ -0.59
SQSTM1-213ENST00000510187 COX6A2Q02221 97 aa11.34□□□□□ -0.59
SQSTM1-213ENST00000510187 H7C423 109 aa11.33□□□□□ -0.6
SQSTM1-213ENST00000510187 LINC00694P0DN24 101 aa11.33□□□□□ -0.6
SQSTM1-213ENST00000510187 NTM-AS1Q6ZSK4 140 aa11.33□□□□□ -0.6
SQSTM1-213ENST00000510187 PPDPFQ9H3Y8 114 aa11.33□□□□□ -0.6
SQSTM1-213ENST00000510187 SMIM1B2RUZ4 78 aa11.32□□□□□ -0.6
SQSTM1-213ENST00000510187 RPL13AP40429 203 aaKnown RBP11.32□□□□□ -0.6
SQSTM1-213ENST00000510187 CDC42SE2Q9NRR3 84 aa11.32□□□□□ -0.6
SQSTM1-213ENST00000510187 NBEAL1Q6ZS30 2694 aa11.32□□□□□ -0.6
SQSTM1-213ENST00000510187 TMEM243Q9BU79 118 aa11.32□□□□□ -0.6
SQSTM1-213ENST00000510187 DNAH3Q8TD57 4116 aa11.32□□□□□ -0.6
SQSTM1-213ENST00000510187 PLAC8L1A1L4L8 177 aa11.31□□□□□ -0.6
SQSTM1-213ENST00000510187 HERV-K104P63124 156 aa11.31□□□□□ -0.6
SQSTM1-213ENST00000510187 DEFB135Q30KP9 77 aa11.31□□□□□ -0.6
SQSTM1-213ENST00000510187 OVOL2Q9BRP0 275 aa11.31□□□□□ -0.6
SQSTM1-213ENST00000510187 Q9H8V8 135 aa11.31□□□□□ -0.6
SQSTM1-213ENST00000510187 NOP10Q9NPE3 64 aaKnown RBP11.31□□□□□ -0.6
SQSTM1-213ENST00000510187 TRBV6-4A0A1B0GX49 114 aa11.3□□□□□ -0.6
SQSTM1-213ENST00000510187 GAGE12JA6NER3 117 aa11.3□□□□□ -0.6
SQSTM1-213ENST00000510187 H3BT86 120 aa11.3□□□□□ -0.6
SQSTM1-213ENST00000510187 K7EIL1 84 aa11.3□□□□□ -0.6
SQSTM1-213ENST00000510187 GAGE4Q13068 117 aa11.3□□□□□ -0.6
SQSTM1-213ENST00000510187 GAGE5Q13069 117 aa11.3□□□□□ -0.6
SQSTM1-213ENST00000510187 LINC00308Q8TCZ7 52 aa11.29□□□□□ -0.6
SQSTM1-213ENST00000510187 F5H768 121 aa11.29□□□□□ -0.6
SQSTM1-213ENST00000510187 UBE2L6O14933 153 aa11.29□□□□□ -0.6
SQSTM1-213ENST00000510187 ZNF625Q96I27 306 aaPredicted RBP11.29□□□□□ -0.6
SQSTM1-213ENST00000510187 TRAV13-1A0A0B4J241 112 aa11.28□□□□□ -0.6
SQSTM1-213ENST00000510187 A0A1B0GV72 72 aa11.28□□□□□ -0.6
SQSTM1-213ENST00000510187 LST1O00453 97 aa11.28□□□□□ -0.6
SQSTM1-213ENST00000510187 DEFB121Q5J5C9 76 aa11.28□□□□□ -0.6
SQSTM1-213ENST00000510187 TRGV2A0A075B6R0 118 aa11.27□□□□□ -0.61
SQSTM1-213ENST00000510187 XGP55808 180 aa11.27□□□□□ -0.61
SQSTM1-213ENST00000510187 NPC2P61916 151 aa11.27□□□□□ -0.61
SQSTM1-213ENST00000510187 NTN5Q8WTR8 489 aaPredicted RBP11.27□□□□□ -0.61
SQSTM1-213ENST00000510187 GAGE7O76087 117 aa11.26□□□□□ -0.61
SQSTM1-213ENST00000510187 MT-ATP8P03928 68 aa11.26□□□□□ -0.61
SQSTM1-213ENST00000510187 GAGE12FP0CL80 117 aa11.26□□□□□ -0.61
SQSTM1-213ENST00000510187 GAGE12GP0CL81 117 aa11.26□□□□□ -0.61
SQSTM1-213ENST00000510187 GAGE12IP0CL82 117 aa11.26□□□□□ -0.61
SQSTM1-213ENST00000510187 C2orf82Q6UX34 121 aa11.26□□□□□ -0.61
SQSTM1-213ENST00000510187 UBE2WQ96B02 151 aa11.26□□□□□ -0.61
SQSTM1-213ENST00000510187 DAND5Q8N907 189 aa11.25□□□□□ -0.61
SQSTM1-213ENST00000510187 X6R8D5 127 aa11.25□□□□□ -0.61
SQSTM1-213ENST00000510187 SMIM9A6NGZ8 99 aa11.24□□□□□ -0.61
SQSTM1-213ENST00000510187 TRGV4A0A0C4DH28 118 aa11.23□□□□□ -0.61
SQSTM1-213ENST00000510187 MEIG1Q5JSS6 88 aa11.23□□□□□ -0.61
SQSTM1-213ENST00000510187 MRAPQ8TCY5 172 aa11.22□□□□□ -0.61
SQSTM1-213ENST00000510187 CLEC2BQ92478 149 aa11.22□□□□□ -0.61
SQSTM1-213ENST00000510187 NBEAL2Q6ZNJ1 2754 aa11.22□□□□□ -0.61
SQSTM1-213ENST00000510187 RETNQ9HD89 108 aa11.21□□□□□ -0.61
SQSTM1-213ENST00000510187 COX7A2LO14548 114 aa11.21□□□□□ -0.62
SQSTM1-213ENST00000510187 FHL2Q14192 279 aa11.21□□□□□ -0.62
SQSTM1-213ENST00000510187 SOSTDC1Q6X4U4 206 aa11.21□□□□□ -0.62
SQSTM1-213ENST00000510187 TRBV6-8A0A0A6YYG3 113 aa11.2□□□□□ -0.62
SQSTM1-213ENST00000510187 TRAV8-4A0A0B4J246 113 aa11.2□□□□□ -0.62
SQSTM1-213ENST00000510187 TEX49A0A1B0GTD5 131 aa11.2□□□□□ -0.62
SQSTM1-213ENST00000510187 MIFP14174 115 aa11.2□□□□□ -0.62
SQSTM1-213ENST00000510187 CKS1BP61024 79 aa11.2□□□□□ -0.62
SQSTM1-213ENST00000510187 IGHV4-28A0A0C4DH34 117 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms