RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 TMEM101Q96IK0 257 aa5.7□□□□□ -1.5
SCN1A-207ENST00000507401 SGK494Q96LW2 274 aa5.7□□□□□ -1.5
SCN1A-207ENST00000507401 DNAH10Q8IVF4 4471 aa5.69□□□□□ -1.5
SCN1A-207ENST00000507401 TRBV10-2A0A0K0K1G8 114 aa5.69□□□□□ -1.5
SCN1A-207ENST00000507401 ORM1P02763 201 aa5.69□□□□□ -1.5
SCN1A-207ENST00000507401 COX6CP09669 75 aa5.69□□□□□ -1.5
SCN1A-207ENST00000507401 EMP1P54849 157 aa5.69□□□□□ -1.5
SCN1A-207ENST00000507401 MEIG1Q5JSS6 88 aa5.69□□□□□ -1.5
SCN1A-207ENST00000507401 IGFL4Q6B9Z1 124 aa5.69□□□□□ -1.5
SCN1A-207ENST00000507401 RNF182Q8N6D2 247 aa5.69□□□□□ -1.5
SCN1A-207ENST00000507401 MAPKAPK5-AS1Q8N8E1 139 aa5.69□□□□□ -1.5
SCN1A-207ENST00000507401 SLC25A29Q8N8R3 303 aa5.69□□□□□ -1.5
SCN1A-207ENST00000507401 NEXN-AS1Q8NBZ9 246 aa5.69□□□□□ -1.5
SCN1A-207ENST00000507401 SCGB3A1Q96QR1 104 aa5.69□□□□□ -1.5
SCN1A-207ENST00000507401 SMIM2Q9BVW6 85 aa5.69□□□□□ -1.5
SCN1A-207ENST00000507401 TCL1BO95988 128 aa5.68□□□□□ -1.5
SCN1A-207ENST00000507401 INSP01308 110 aa5.68□□□□□ -1.5
SCN1A-207ENST00000507401 SPINK13Q1W4C9 94 aa5.68□□□□□ -1.5
SCN1A-207ENST00000507401 FAM222AQ5U5X8 452 aa5.68□□□□□ -1.5
SCN1A-207ENST00000507401 POM121L12Q8N7R1 296 aa5.68□□□□□ -1.5
SCN1A-207ENST00000507401 PRADC1Q9BSG0 188 aa5.68□□□□□ -1.5
SCN1A-207ENST00000507401 FRAS1Q86XX4 4008 aa5.67□□□□□ -1.5
SCN1A-207ENST00000507401 TRBV30A0A0K0K1B3 111 aa5.67□□□□□ -1.5
SCN1A-207ENST00000507401 C11orf86A6NJI1 115 aa5.67□□□□□ -1.5
SCN1A-207ENST00000507401 LYRM9A8MSI8 78 aa5.67□□□□□ -1.5
SCN1A-207ENST00000507401 J3KT08 172 aa5.67□□□□□ -1.5
SCN1A-207ENST00000507401 M0R2P5 195 aa5.67□□□□□ -1.5
SCN1A-207ENST00000507401 UQCRQO14949 82 aa5.67□□□□□ -1.5
SCN1A-207ENST00000507401 CXCL5P42830 114 aa5.67□□□□□ -1.5
SCN1A-207ENST00000507401 ERCC8Q13216 396 aa5.67□□□□□ -1.5
SCN1A-207ENST00000507401 NRACQ8N912 160 aa5.67□□□□□ -1.5
SCN1A-207ENST00000507401 OR13C6PQ8NH95 151 aa5.67□□□□□ -1.5
SCN1A-207ENST00000507401 UBE2WQ96B02 151 aa5.67□□□□□ -1.5
SCN1A-207ENST00000507401 A0A0J9YY99 117 aa5.66□□□□□ -1.5
SCN1A-207ENST00000507401 SDHAF1A6NFY7 115 aa5.66□□□□□ -1.5
SCN1A-207ENST00000507401 IGHV3-30P01768 117 aa5.66□□□□□ -1.5
SCN1A-207ENST00000507401 CFC1BP0CG36 223 aa5.66□□□□□ -1.5
SCN1A-207ENST00000507401 CFC1P0CG37 223 aa5.66□□□□□ -1.5
SCN1A-207ENST00000507401 IGHV3-30-5P0DP03 117 aa5.66□□□□□ -1.5
SCN1A-207ENST00000507401 DAD1P61803 113 aa5.66□□□□□ -1.5
SCN1A-207ENST00000507401 SUMO2P61956 95 aaKnown RBP5.66□□□□□ -1.5
SCN1A-207ENST00000507401 C15orf53Q8NAA6 179 aa5.66□□□□□ -1.5
SCN1A-207ENST00000507401 COPS9Q8WXC6 57 aa5.66□□□□□ -1.5
SCN1A-207ENST00000507401 RASL10AQ92737 203 aa5.66□□□□□ -1.5
SCN1A-207ENST00000507401 LINC01587Q99440 93 aa5.66□□□□□ -1.5
SCN1A-207ENST00000507401 TIMM17AQ99595 171 aa5.66□□□□□ -1.5
SCN1A-207ENST00000507401 DNAH6Q9C0G6 4158 aa5.66□□□□□ -1.5
SCN1A-207ENST00000507401 TRAV12-2A0A075B6T6 113 aa5.65□□□□□ -1.5
SCN1A-207ENST00000507401 SMKR1H3BMG3 65 aa5.65□□□□□ -1.5
SCN1A-207ENST00000507401 LINC01620Q4KN68 170 aa5.65□□□□□ -1.5
SCN1A-207ENST00000507401 FAM159AQ6UWV7 190 aa5.65□□□□□ -1.5
SCN1A-207ENST00000507401 PLEKHB2Q96CS7 222 aa5.65□□□□□ -1.5
SCN1A-207ENST00000507401 C16orf74Q96GX8 76 aa5.65□□□□□ -1.5
SCN1A-207ENST00000507401 C8orf49Q96NF6 230 aa5.65□□□□□ -1.5
SCN1A-207ENST00000507401 ODF3Q96PU9 254 aa5.65□□□□□ -1.5
SCN1A-207ENST00000507401 TRAV4A0A0B4J268 109 aa5.64□□□□□ -1.51
SCN1A-207ENST00000507401 PLAC8L1A1L4L8 177 aa5.64□□□□□ -1.51
SCN1A-207ENST00000507401 C9JAW5 83 aa5.64□□□□□ -1.51
SCN1A-207ENST00000507401 PRAC2D3DTV9 90 aa5.64□□□□□ -1.51
SCN1A-207ENST00000507401 CCDC179H3BU77 68 aa5.64□□□□□ -1.51
SCN1A-207ENST00000507401 H3BVH4 76 aa5.64□□□□□ -1.51
SCN1A-207ENST00000507401 IGHV3-33P01772 117 aa5.64□□□□□ -1.51
SCN1A-207ENST00000507401 PRM2P04554 102 aa5.64□□□□□ -1.51
SCN1A-207ENST00000507401 PMVKQ15126 192 aa5.64□□□□□ -1.51
SCN1A-207ENST00000507401 LINC00336Q6ZUF6 198 aa5.64□□□□□ -1.51
SCN1A-207ENST00000507401 BAALCQ8WXS3 180 aa5.64□□□□□ -1.51
SCN1A-207ENST00000507401 LINC00526Q96FQ7 95 aa5.64□□□□□ -1.51
SCN1A-207ENST00000507401 TTTY13Q9BZ97 58 aa5.64□□□□□ -1.51
SCN1A-207ENST00000507401 DPH3P1Q9H4G8 78 aa5.64□□□□□ -1.51
SCN1A-207ENST00000507401 TMSB15BA0A087X1C1 80 aa5.63□□□□□ -1.51
SCN1A-207ENST00000507401 SPANXN1Q5VSR9 72 aa5.63□□□□□ -1.51
SCN1A-207ENST00000507401 ZFP2Q6ZN57 461 aa5.63□□□□□ -1.51
SCN1A-207ENST00000507401 LINC00643Q86TS7 51 aa5.63□□□□□ -1.51
SCN1A-207ENST00000507401 C3orf22Q8N5N4 141 aa5.63□□□□□ -1.51
SCN1A-207ENST00000507401 TMEM263Q8WUH6 116 aaKnown RBP5.63□□□□□ -1.51
SCN1A-207ENST00000507401 LINC00477Q96M19 166 aa5.63□□□□□ -1.51
SCN1A-207ENST00000507401 KRTAP3-1Q9BYR8 98 aa5.63□□□□□ -1.51
SCN1A-207ENST00000507401 DNAH2Q9P225 4427 aa5.63□□□□□ -1.51
SCN1A-207ENST00000507401 DNAH17Q9UFH2 4485 aa5.62□□□□□ -1.51
SCN1A-207ENST00000507401 A0A0J9YXY3 114 aa5.62□□□□□ -1.51
SCN1A-207ENST00000507401 H3BTX0 84 aa5.62□□□□□ -1.51
SCN1A-207ENST00000507401 M0R3E3 92 aa5.62□□□□□ -1.51
SCN1A-207ENST00000507401 LEPROTO15243 131 aa5.62□□□□□ -1.51
SCN1A-207ENST00000507401 DEFB130BP0DP73 79 aa5.62□□□□□ -1.51
SCN1A-207ENST00000507401 DEFB130AP0DP74 79 aa5.62□□□□□ -1.51
SCN1A-207ENST00000507401 HTN1P15515 57 aa5.62□□□□□ -1.51
SCN1A-207ENST00000507401 HTN3P15516 51 aa5.62□□□□□ -1.51
SCN1A-207ENST00000507401 LGALS3P17931 250 aaKnown RBP5.62□□□□□ -1.51
SCN1A-207ENST00000507401 C2orf66Q6UXQ4 117 aa5.62□□□□□ -1.51
SCN1A-207ENST00000507401 ZNRF2Q8NHG8 242 aa5.62□□□□□ -1.51
SCN1A-207ENST00000507401 NTN5Q8WTR8 489 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-207ENST00000507401 PPDPFQ9H3Y8 114 aa5.62□□□□□ -1.51
SCN1A-207ENST00000507401 J3QQQ9 107 aa5.61□□□□□ -1.51
SCN1A-207ENST00000507401 ATOX1O00244 68 aa5.61□□□□□ -1.51
SCN1A-207ENST00000507401 C2orf82Q6UX34 121 aa5.61□□□□□ -1.51
SCN1A-207ENST00000507401 Q6ZR54 194 aa5.61□□□□□ -1.51
SCN1A-207ENST00000507401 C9orf47Q6ZRZ4 202 aa5.61□□□□□ -1.51
SCN1A-207ENST00000507401 UBE2DNLQ8IWF7 75 aa5.61□□□□□ -1.51
SCN1A-207ENST00000507401 LINC00612Q8N6U2 182 aa5.61□□□□□ -1.51
SCN1A-207ENST00000507401 FAM19A4Q96LR4 140 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 151.7 ms