RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 CELA1Q9UNI1 258 aa5.89□□□□□ -1.47
USP54-215ENST00000497106 NBEAQ8NFP9 2946 aa5.89□□□□□ -1.47
USP54-215ENST00000497106 SCGB1C2P0DMR2 95 aa5.89□□□□□ -1.47
USP54-215ENST00000497106 REG3AQ06141 175 aa5.89□□□□□ -1.47
USP54-215ENST00000497106 COX7B2Q8TF08 81 aa5.89□□□□□ -1.47
USP54-215ENST00000497106 UBE2WQ96B02 151 aa5.89□□□□□ -1.47
USP54-215ENST00000497106 AGRNO00468 2067 aa5.89□□□□□ -1.47
USP54-215ENST00000497106 CEMP1Q6PRD7 247 aaPredicted RBP5.89□□□□□ -1.47
USP54-215ENST00000497106 Q6ZTC4 211 aa5.89□□□□□ -1.47
USP54-215ENST00000497106 IGLL5B9A064 214 aa5.89□□□□□ -1.47
USP54-215ENST00000497106 ZNF561-AS1K7EIQ3 104 aa5.89□□□□□ -1.47
USP54-215ENST00000497106 XCL1P47992 114 aa5.89□□□□□ -1.47
USP54-215ENST00000497106 MIAQ16674 131 aa5.89□□□□□ -1.47
USP54-215ENST00000497106 PSMB2P49721 201 aa5.88□□□□□ -1.47
USP54-215ENST00000497106 SBSPONQ8IVN8 264 aa5.88□□□□□ -1.47
USP54-215ENST00000497106 SPANXB1Q9NS25 103 aaPredicted RBP5.88□□□□□ -1.47
USP54-215ENST00000497106 F8WDY8 70 aa5.88□□□□□ -1.47
USP54-215ENST00000497106 LINC00158P58513 81 aa5.88□□□□□ -1.47
USP54-215ENST00000497106 TM2D3Q9BRN9 247 aa5.88□□□□□ -1.47
USP54-215ENST00000497106 TRAV8-3A0A0A6YYJ7 113 aa5.88□□□□□ -1.47
USP54-215ENST00000497106 K7EIL1 84 aa5.88□□□□□ -1.47
USP54-215ENST00000497106 PRB2P02812 416 aaPredicted RBP5.88□□□□□ -1.47
USP54-215ENST00000497106 LAMA5O15230 3695 aa5.88□□□□□ -1.47
USP54-215ENST00000497106 ASPMQ8IZT6 3477 aa5.88□□□□□ -1.47
USP54-215ENST00000497106 PCP2Q8IVA1 136 aa5.87□□□□□ -1.47
USP54-215ENST00000497106 NOTCH3Q9UM47 2321 aa5.87□□□□□ -1.47
USP54-215ENST00000497106 IGHV3-30P01768 117 aa5.87□□□□□ -1.47
USP54-215ENST00000497106 IGHV3-33P01772 117 aa5.87□□□□□ -1.47
USP54-215ENST00000497106 IGHV3-30-3P0DP02 117 aa5.87□□□□□ -1.47
USP54-215ENST00000497106 IGHV3-30-5P0DP03 117 aa5.87□□□□□ -1.47
USP54-215ENST00000497106 CEND1Q8N111 149 aa5.87□□□□□ -1.47
USP54-215ENST00000497106 GCN1Q92616 2671 aaKnown RBP5.87□□□□□ -1.47
USP54-215ENST00000497106 TTC32Q5I0X7 151 aa5.87□□□□□ -1.47
USP54-215ENST00000497106 KLK12Q9UKR0 248 aa5.87□□□□□ -1.47
USP54-215ENST00000497106 IGLV4-69A0A075B6H9 119 aa5.87□□□□□ -1.47
USP54-215ENST00000497106 CD164L2Q6UWJ8 174 aa5.87□□□□□ -1.47
USP54-215ENST00000497106 LRBAP50851 2863 aa5.87□□□□□ -1.47
USP54-215ENST00000497106 PSCAO43653 123 aa5.86□□□□□ -1.47
USP54-215ENST00000497106 LINC00269Q8N2A0 174 aa5.86□□□□□ -1.47
USP54-215ENST00000497106 A0A0J9YXY3 114 aa5.86□□□□□ -1.47
USP54-215ENST00000497106 OR13C6PQ8NH95 151 aa5.86□□□□□ -1.47
USP54-215ENST00000497106 Q9H8V8 135 aa5.86□□□□□ -1.47
USP54-215ENST00000497106 LINC00959A0A1B0GUT2 108 aa5.86□□□□□ -1.47
USP54-215ENST00000497106 CHCHD10Q8WYQ3 142 aaPredicted RBP5.86□□□□□ -1.47
USP54-215ENST00000497106 NHP2Q9NX24 153 aaKnown RBP5.86□□□□□ -1.47
USP54-215ENST00000497106 IGKV2D-24A0A075B6R9 120 aa5.86□□□□□ -1.47
USP54-215ENST00000497106 TIMM17BO60830 172 aa5.86□□□□□ -1.47
USP54-215ENST00000497106 CLPSL2Q6UWE3 100 aa5.86□□□□□ -1.47
USP54-215ENST00000497106 MUC7Q8TAX7 377 aa5.86□□□□□ -1.47
USP54-215ENST00000497106 PPDPFQ9H3Y8 114 aa5.86□□□□□ -1.47
USP54-215ENST00000497106 LYPD5Q6UWN5 251 aa5.85□□□□□ -1.47
USP54-215ENST00000497106 C5orf38Q86SI9 138 aa5.85□□□□□ -1.47
USP54-215ENST00000497106 CDKN2A-AS1Q9UH64 79 aa5.85□□□□□ -1.47
USP54-215ENST00000497106 NDUFA1O15239 70 aa5.85□□□□□ -1.47
USP54-215ENST00000497106 NTM-AS1Q6ZSK4 140 aa5.85□□□□□ -1.47
USP54-215ENST00000497106 TEX15Q9BXT5 2789 aa5.85□□□□□ -1.47
USP54-215ENST00000497106 BAHCC1Q9P281 2608 aa5.85□□□□□ -1.47
USP54-215ENST00000497106 MDFIQ99750 246 aa5.84□□□□□ -1.47
USP54-215ENST00000497106 FBN2P35556 2912 aa5.84□□□□□ -1.47
USP54-215ENST00000497106 LINC00694P0DN24 101 aa5.84□□□□□ -1.47
USP54-215ENST00000497106 C14orf177Q52M58 125 aa5.84□□□□□ -1.47
USP54-215ENST00000497106 LINC00242Q5T6M2 205 aa5.84□□□□□ -1.47
USP54-215ENST00000497106 SETD2Q9BYW2 2564 aaPredicted RBP5.84□□□□□ -1.48
USP54-215ENST00000497106 FAM19A3Q7Z5A8 133 aa5.83□□□□□ -1.48
USP54-215ENST00000497106 SPANXCQ9NY87 97 aa5.83□□□□□ -1.48
USP54-215ENST00000497106 CYSRT1A8MQ03 144 aa5.83□□□□□ -1.48
USP54-215ENST00000497106 MT-ATP8P03928 68 aa5.83□□□□□ -1.48
USP54-215ENST00000497106 SPAG11BQ08648 103 aa5.83□□□□□ -1.48
USP54-215ENST00000497106 KRTAP21-3Q3LHN1 58 aa5.83□□□□□ -1.48
USP54-215ENST00000497106 IGLV5-45A0A087WSX0 123 aa5.83□□□□□ -1.48
USP54-215ENST00000497106 RPL13AP40429 203 aaKnown RBP5.83□□□□□ -1.48
USP54-215ENST00000497106 MUC4Q99102 2169 aa5.82□□□□□ -1.48
USP54-215ENST00000497106 A0A087WZ39 114 aa5.82□□□□□ -1.48
USP54-215ENST00000497106 TP73-AS1Q9UF72 201 aa5.82□□□□□ -1.48
USP54-215ENST00000497106 IGLV10-54A0A075B6I4 117 aa5.82□□□□□ -1.48
USP54-215ENST00000497106 TRAV13-2A0A0B4J235 113 aa5.82□□□□□ -1.48
USP54-215ENST00000497106 IBA57-AS1B1ANH7 110 aa5.82□□□□□ -1.48
USP54-215ENST00000497106 LINC01556Q5JQF7 62 aa5.82□□□□□ -1.48
USP54-215ENST00000497106 Q8IZM0 81 aa5.82□□□□□ -1.48
USP54-215ENST00000497106 NAA38Q9BRA0 125 aaKnown RBP5.82□□□□□ -1.48
USP54-215ENST00000497106 ITPR2Q14571 2701 aa5.81□□□□□ -1.48
USP54-215ENST00000497106 IGLV4-60A0A075B6I1 120 aa5.81□□□□□ -1.48
USP54-215ENST00000497106 IGKV2D-26A0A0A0MRZ7 120 aa5.81□□□□□ -1.48
USP54-215ENST00000497106 LOC107984156A0A0G2JMH3 177 aa5.81□□□□□ -1.48
USP54-215ENST00000497106 ARL17AQ8IVW1 177 aa5.81□□□□□ -1.48
USP54-215ENST00000497106 PDZD2O15018 2839 aa5.81□□□□□ -1.48
USP54-215ENST00000497106 CCDC179H3BU77 68 aa5.81□□□□□ -1.48
USP54-215ENST00000497106 GHRHP01286 108 aa5.81□□□□□ -1.48
USP54-215ENST00000497106 CAMK2N2Q96S95 79 aa5.81□□□□□ -1.48
USP54-215ENST00000497106 NDUFV3P56181 108 aaKnown RBP5.8□□□□□ -1.48
USP54-215ENST00000497106 GAGE2BQ13066 116 aa5.8□□□□□ -1.48
USP54-215ENST00000497106 GAGE2EQ4V326 116 aa5.8□□□□□ -1.48
USP54-215ENST00000497106 SPANXDQ9BXN6 97 aa5.8□□□□□ -1.48
USP54-215ENST00000497106 GAGE2DQ9UEU5 116 aa5.8□□□□□ -1.48
USP54-215ENST00000497106 TENM4Q6N022 2769 aa5.8□□□□□ -1.48
USP54-215ENST00000497106 A0A1B0GWB2 263 aa5.8□□□□□ -1.48
USP54-215ENST00000497106 J3KT08 172 aa5.8□□□□□ -1.48
USP54-215ENST00000497106 Q9HAA7 133 aa5.8□□□□□ -1.48
USP54-215ENST00000497106 ETDBQ3ZM63 59 aa5.8□□□□□ -1.48
USP54-215ENST00000497106 SMIM1B2RUZ4 78 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms