RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 IFITM1P13164 125 aa7.52□□□□□ -1.21
USP4-214ENST00000491791 COX6A2Q02221 97 aa7.52□□□□□ -1.21
USP4-214ENST00000491791 RNASE13Q5GAN3 156 aaKnown RBP7.52□□□□□ -1.21
USP4-214ENST00000491791 LYRM7Q5U5X0 104 aa7.52□□□□□ -1.21
USP4-214ENST00000491791 MRAPQ8TCY5 172 aa7.52□□□□□ -1.21
USP4-214ENST00000491791 LOC100131303A0A0U1RQF7 123 aa7.51□□□□□ -1.21
USP4-214ENST00000491791 SMIM1B2RUZ4 78 aa7.51□□□□□ -1.21
USP4-214ENST00000491791 F8W1H4 67 aa7.51□□□□□ -1.21
USP4-214ENST00000491791 UBE2L6O14933 153 aa7.51□□□□□ -1.21
USP4-214ENST00000491791 TRAV26-1A0A087WT03 109 aa7.5□□□□□ -1.21
USP4-214ENST00000491791 TSPAN13O95857 204 aa7.5□□□□□ -1.21
USP4-214ENST00000491791 SPINK8P0C7L1 97 aa7.5□□□□□ -1.21
USP4-214ENST00000491791 MIAQ16674 131 aa7.5□□□□□ -1.21
USP4-214ENST00000491791 MUSTN1Q8IVN3 82 aa7.5□□□□□ -1.21
USP4-214ENST00000491791 Q8NAQ8 132 aa7.5□□□□□ -1.21
USP4-214ENST00000491791 ZNF625Q96I27 306 aaPredicted RBP7.5□□□□□ -1.21
USP4-214ENST00000491791 NAA38Q9BRA0 125 aaKnown RBP7.5□□□□□ -1.21
USP4-214ENST00000491791 PGPEP1Q9NXJ5 209 aa7.5□□□□□ -1.21
USP4-214ENST00000491791 PRO1854Q9UHT4 67 aa7.5□□□□□ -1.21
USP4-214ENST00000491791 NBEAL2Q6ZNJ1 2754 aa7.49□□□□□ -1.21
USP4-214ENST00000491791 TRBV20-1A0A075B6N2 111 aa7.49□□□□□ -1.21
USP4-214ENST00000491791 IGHV3-64A0A075B6Q5 118 aa7.49□□□□□ -1.21
USP4-214ENST00000491791 A4D1N5 150 aa7.49□□□□□ -1.21
USP4-214ENST00000491791 PRB2P02812 416 aaPredicted RBP7.49□□□□□ -1.21
USP4-214ENST00000491791 HERV-K104P63124 156 aa7.49□□□□□ -1.21
USP4-214ENST00000491791 OCIAD2Q56VL3 154 aa7.49□□□□□ -1.21
USP4-214ENST00000491791 FAM222AQ5U5X8 452 aa7.49□□□□□ -1.21
USP4-214ENST00000491791 LINC01561Q8N1V8 128 aa7.49□□□□□ -1.21
USP4-214ENST00000491791 ATP6V0E2Q8NHE4 81 aa7.49□□□□□ -1.21
USP4-214ENST00000491791 TEX48A0A1B0GUV7 120 aa7.48□□□□□ -1.21
USP4-214ENST00000491791 IGHV3-33P01772 117 aa7.48□□□□□ -1.21
USP4-214ENST00000491791 DEFB130BP0DP73 79 aa7.48□□□□□ -1.21
USP4-214ENST00000491791 DEFB130AP0DP74 79 aa7.48□□□□□ -1.21
USP4-214ENST00000491791 EGFEM1PQ0D2K5 195 aa7.48□□□□□ -1.21
USP4-214ENST00000491791 ADAMTSL4-AS1Q5T5F5 129 aa7.48□□□□□ -1.21
USP4-214ENST00000491791 COPS9Q8WXC6 57 aa7.48□□□□□ -1.21
USP4-214ENST00000491791 PRO0461Q9UI25 63 aa7.48□□□□□ -1.21
USP4-214ENST00000491791 IGHV3OR16-9A0A0B4J2B5 98 aa7.47□□□□□ -1.21
USP4-214ENST00000491791 IGHV4-28A0A0C4DH34 117 aa7.47□□□□□ -1.21
USP4-214ENST00000491791 K7ERU9 68 aa7.47□□□□□ -1.21
USP4-214ENST00000491791 EIF4EBP3O60516 100 aaPredicted RBP7.47□□□□□ -1.21
USP4-214ENST00000491791 GYPEP15421 78 aa7.47□□□□□ -1.21
USP4-214ENST00000491791 CIRBPQ14011 172 aaKnown RBP7.47□□□□□ -1.21
USP4-214ENST00000491791 OXLD1Q5BKU9 147 aa7.47□□□□□ -1.21
USP4-214ENST00000491791 SH2D6Q7Z4S9 175 aa7.47□□□□□ -1.21
USP4-214ENST00000491791 LINC01600Q96MT4 127 aa7.47□□□□□ -1.21
USP4-214ENST00000491791 TRAV13-1A0A0B4J241 112 aa7.46□□□□□ -1.22
USP4-214ENST00000491791 M0QXV9 152 aa7.46□□□□□ -1.22
USP4-214ENST00000491791 APOMO95445 188 aa7.46□□□□□ -1.22
USP4-214ENST00000491791 IGHV4-30-4P0DP06 118 aa7.46□□□□□ -1.22
USP4-214ENST00000491791 RBX1P62877 108 aa7.46□□□□□ -1.22
USP4-214ENST00000491791 GAGE6Q13070 117 aa7.46□□□□□ -1.22
USP4-214ENST00000491791 DEFB135Q30KP9 77 aa7.46□□□□□ -1.22
USP4-214ENST00000491791 SFTA2Q6UW10 78 aa7.46□□□□□ -1.22
USP4-214ENST00000491791 IGLV4-60A0A075B6I1 120 aa7.45□□□□□ -1.22
USP4-214ENST00000491791 A0A087WZ39 114 aa7.45□□□□□ -1.22
USP4-214ENST00000491791 PAX4O43316 350 aa7.45□□□□□ -1.22
USP4-214ENST00000491791 SPART-AS1P0CW21 52 aa7.45□□□□□ -1.22
USP4-214ENST00000491791 CHCHD5Q9BSY4 110 aa7.45□□□□□ -1.22
USP4-214ENST00000491791 ERG28Q9UKR5 140 aa7.45□□□□□ -1.22
USP4-214ENST00000491791 TRBV30A0A0K0K1B3 111 aa7.44□□□□□ -1.22
USP4-214ENST00000491791 ATP5G1P05496 136 aa7.44□□□□□ -1.22
USP4-214ENST00000491791 DAD1P61803 113 aa7.44□□□□□ -1.22
USP4-214ENST00000491791 Q9H8V8 135 aa7.44□□□□□ -1.22
USP4-214ENST00000491791 LINC00959A0A1B0GUT2 108 aa7.43□□□□□ -1.22
USP4-214ENST00000491791 H3BMG7 143 aa7.43□□□□□ -1.22
USP4-214ENST00000491791 H3BNG1 76 aa7.43□□□□□ -1.22
USP4-214ENST00000491791 TENM3Q9P273 2699 aa7.42□□□□□ -1.22
USP4-214ENST00000491791 MRPL23Q16540 153 aaKnown RBP7.42□□□□□ -1.22
USP4-214ENST00000491791 DEFB121Q5J5C9 76 aa7.42□□□□□ -1.22
USP4-214ENST00000491791 LINC00308Q8TCZ7 52 aa7.42□□□□□ -1.22
USP4-214ENST00000491791 CBY1Q9Y3M2 126 aa7.42□□□□□ -1.22
USP4-214ENST00000491791 PRSS2P07478 247 aa7.41□□□□□ -1.22
USP4-214ENST00000491791 COX7B2Q8TF08 81 aa7.41□□□□□ -1.22
USP4-214ENST00000491791 TCL1BO95988 128 aa7.4□□□□□ -1.22
USP4-214ENST00000491791 KRTAP10-11P60412 298 aa7.4□□□□□ -1.22
USP4-214ENST00000491791 WFDC2Q14508 124 aa7.4□□□□□ -1.22
USP4-214ENST00000491791 SS18Q15532 418 aa7.4□□□□□ -1.22
USP4-214ENST00000491791 C11orf68Q9H3H3 251 aaKnown RBP7.4□□□□□ -1.22
USP4-214ENST00000491791 CELA1Q9UNI1 258 aa7.4□□□□□ -1.22
USP4-214ENST00000491791 LOC107984156A0A0G2JMH3 177 aa7.39□□□□□ -1.23
USP4-214ENST00000491791 IBA57-AS1B1ANH7 110 aa7.39□□□□□ -1.23
USP4-214ENST00000491791 SMCPP49901 116 aaPredicted RBP7.39□□□□□ -1.23
USP4-214ENST00000491791 LELP1Q5T871 98 aa7.39□□□□□ -1.23
USP4-214ENST00000491791 ARL17AQ8IVW1 177 aa7.39□□□□□ -1.23
USP4-214ENST00000491791 K7EIL1 84 aa7.38□□□□□ -1.23
USP4-214ENST00000491791 CD164L2Q6UWJ8 174 aa7.38□□□□□ -1.23
USP4-214ENST00000491791 Q8IZM0 81 aa7.38□□□□□ -1.23
USP4-214ENST00000491791 WWC2-AS2Q96NR7 200 aa7.38□□□□□ -1.23
USP4-214ENST00000491791 ICOSQ9Y6W8 199 aa7.38□□□□□ -1.23
USP4-214ENST00000491791 COL7A1Q02388 2944 aa7.37□□□□□ -1.23
USP4-214ENST00000491791 J3QR89 54 aa7.37□□□□□ -1.23
USP4-214ENST00000491791 PSMB2P49721 201 aa7.37□□□□□ -1.23
USP4-214ENST00000491791 ATXN8Q156A1 80 aa7.37□□□□□ -1.23
USP4-214ENST00000491791 SOSTDC1Q6X4U4 206 aa7.37□□□□□ -1.23
USP4-214ENST00000491791 KMT2CQ8NEZ4 4911 aaKnown RBP7.36□□□□□ -1.23
USP4-214ENST00000491791 A0A096LPF7 62 aa7.36□□□□□ -1.23
USP4-214ENST00000491791 TMEM262E9PQX1 116 aa7.36□□□□□ -1.23
USP4-214ENST00000491791 DEFB4AO15263 64 aa7.36□□□□□ -1.23
USP4-214ENST00000491791 COX6CP09669 75 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms