RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 PXDNQ92626 1479 aa-0.02□□□□□ -2.41
PTPN4-212ENST00000488896 SCAPERQ9BY12 1400 aa-0.02□□□□□ -2.41
PTPN4-212ENST00000488896 UNC79Q9P2D8 2635 aa-0.02□□□□□ -2.41
PTPN4-212ENST00000488896 hADV29S1A0JD25 119 aa-0.02□□□□□ -2.41
PTPN4-212ENST00000488896 GNGT2O14610 69 aa-0.02□□□□□ -2.41
PTPN4-212ENST00000488896 SPINK4O60575 86 aa-0.02□□□□□ -2.41
PTPN4-212ENST00000488896 HSD52Q0P140 79 aa-0.02□□□□□ -2.41
PTPN4-212ENST00000488896 LINC01600Q96MT4 127 aa-0.02□□□□□ -2.41
PTPN4-212ENST00000488896 AP4S1Q9Y587 144 aa-0.02□□□□□ -2.41
PTPN4-212ENST00000488896 HIVEP3Q5T1R4 2406 aa-0.02□□□□□ -2.41
PTPN4-212ENST00000488896 LRRC37A2A6NM11 1700 aa-0.02□□□□□ -2.41
PTPN4-212ENST00000488896 BIVM-ERCC5R4GMW8 1640 aa-0.02□□□□□ -2.41
PTPN4-212ENST00000488896 SSPOA2VEC9 5147 aa-0.03□□□□□ -2.41
PTPN4-212ENST00000488896 TRBV7-4A0A0J9YYF1 115 aa-0.03□□□□□ -2.41
PTPN4-212ENST00000488896 DEFB105AQ8NG35 78 aa-0.03□□□□□ -2.41
PTPN4-212ENST00000488896 FAM167A-AS1Q96KT0 104 aa-0.03□□□□□ -2.41
PTPN4-212ENST00000488896 SPRR4Q96PI1 79 aa-0.03□□□□□ -2.41
PTPN4-212ENST00000488896 APLNQ9ULZ1 77 aa-0.03□□□□□ -2.41
PTPN4-212ENST00000488896 PPRC1Q5VV67 1664 aaKnown RBP-0.03□□□□□ -2.41
PTPN4-212ENST00000488896 ROBO1Q9Y6N7 1651 aa-0.03□□□□□ -2.41
PTPN4-212ENST00000488896 LRP1Q07954 4544 aaKnown RBP-0.04□□□□□ -2.42
PTPN4-212ENST00000488896 A0A0G2JND7 137 aa-0.04□□□□□ -2.42
PTPN4-212ENST00000488896 C7orf77A4D0Y5 90 aa-0.04□□□□□ -2.42
PTPN4-212ENST00000488896 TMEM262E9PQX1 116 aa-0.04□□□□□ -2.42
PTPN4-212ENST00000488896 CRIPTQ9P021 101 aa-0.04□□□□□ -2.42
PTPN4-212ENST00000488896 ANK2Q01484 3957 aa-0.04□□□□□ -2.42
PTPN4-212ENST00000488896 A2ML1A8K2U0 1454 aa-0.04□□□□□ -2.42
PTPN4-212ENST00000488896 WDR7Q9Y4E6 1490 aa-0.04□□□□□ -2.42
PTPN4-212ENST00000488896 A0A1B0GU69 56 aa-0.05□□□□□ -2.42
PTPN4-212ENST00000488896 LINC00959A0A1B0GUT2 108 aa-0.05□□□□□ -2.42
PTPN4-212ENST00000488896 CPSF4LA6NMK7 179 aaKnown RBP-0.05□□□□□ -2.42
PTPN4-212ENST00000488896 PRM1P04553 51 aa-0.05□□□□□ -2.42
PTPN4-212ENST00000488896 SAA2P0DJI9 122 aaPredicted RBP-0.05□□□□□ -2.42
PTPN4-212ENST00000488896 COX8AP10176 69 aa-0.05□□□□□ -2.42
PTPN4-212ENST00000488896 ASIPP42127 132 aa-0.05□□□□□ -2.42
PTPN4-212ENST00000488896 S100A10P60903 97 aa-0.05□□□□□ -2.42
PTPN4-212ENST00000488896 GNGT1P63211 74 aa-0.05□□□□□ -2.42
PTPN4-212ENST00000488896 USMG5Q96IX5 58 aa-0.05□□□□□ -2.42
PTPN4-212ENST00000488896 CGREF1Q99674 301 aa-0.05□□□□□ -2.42
PTPN4-212ENST00000488896 ARHGEF12Q9NZN5 1544 aa-0.05□□□□□ -2.42
PTPN4-212ENST00000488896 URB1O60287 2271 aaKnown RBP-0.05□□□□□ -2.42
PTPN4-212ENST00000488896 MYOM2P54296 1465 aa-0.05□□□□□ -2.42
PTPN4-212ENST00000488896 COL7A1Q02388 2944 aa-0.05□□□□□ -2.42
PTPN4-212ENST00000488896 SMG6Q86US8 1419 aaKnown RBP-0.05□□□□□ -2.42
PTPN4-212ENST00000488896 NSD3Q9BZ95 1437 aa-0.05□□□□□ -2.42
PTPN4-212ENST00000488896 A0A087WVE0 104 aa-0.06□□□□□ -2.42
PTPN4-212ENST00000488896 H3BQ15 152 aa-0.06□□□□□ -2.42
PTPN4-212ENST00000488896 S100PP25815 95 aa-0.06□□□□□ -2.42
PTPN4-212ENST00000488896 UBE2D3P61077 147 aa-0.06□□□□□ -2.42
PTPN4-212ENST00000488896 UBE2D2P62837 147 aa-0.06□□□□□ -2.42
PTPN4-212ENST00000488896 DEFB107AQ8IZN7 70 aa-0.06□□□□□ -2.42
PTPN4-212ENST00000488896 RIMS1Q86UR5 1692 aaKnown RBP-0.06□□□□□ -2.42
PTPN4-212ENST00000488896 PTPN13Q12923 2485 aa-0.06□□□□□ -2.42
PTPN4-212ENST00000488896 LAMC1P11047 1609 aa-0.06□□□□□ -2.42
PTPN4-212ENST00000488896 TSC2P49815 1807 aa-0.06□□□□□ -2.42
PTPN4-212ENST00000488896 NSD1Q96L73 2696 aaPredicted RBP-0.07□□□□□ -2.42
PTPN4-212ENST00000488896 MAP1BP46821 2468 aaKnown RBP-0.07□□□□□ -2.42
PTPN4-212ENST00000488896 WNK1Q9H4A3 2382 aa-0.07□□□□□ -2.42
PTPN4-212ENST00000488896 TMEM218A2RU14 115 aa-0.07□□□□□ -2.42
PTPN4-212ENST00000488896 ATP6V1G2-DDX39BF2Z307 99 aa-0.07□□□□□ -2.42
PTPN4-212ENST00000488896 PMCHL1Q16048 86 aa-0.07□□□□□ -2.42
PTPN4-212ENST00000488896 COL5A1-AS1Q5SY13 56 aa-0.07□□□□□ -2.42
PTPN4-212ENST00000488896 PMCHL2Q9BQD1 86 aa-0.07□□□□□ -2.42
PTPN4-212ENST00000488896 CACFD1Q9UGQ2 172 aa-0.07□□□□□ -2.42
PTPN4-212ENST00000488896 PAPPAQ13219 1627 aa-0.07□□□□□ -2.42
PTPN4-212ENST00000488896 NALCNQ8IZF0 1738 aa-0.07□□□□□ -2.42
PTPN4-212ENST00000488896 ZNF292O60281 2723 aa-0.07□□□□□ -2.42
PTPN4-212ENST00000488896 RAPGEF6Q8TEU7 1601 aa-0.08□□□□□ -2.42
PTPN4-212ENST00000488896 H3BQF6 201 aa-0.08□□□□□ -2.42
PTPN4-212ENST00000488896 I3L3M4 83 aa-0.08□□□□□ -2.42
PTPN4-212ENST00000488896 FAUP35544 74 aaKnown RBP-0.08□□□□□ -2.42
PTPN4-212ENST00000488896 PSMG4Q5JS54 123 aa-0.08□□□□□ -2.42
PTPN4-212ENST00000488896 DEFB123Q8N688 67 aa-0.08□□□□□ -2.42
PTPN4-212ENST00000488896 CELSR1Q9NYQ6 3014 aa-0.08□□□□□ -2.42
PTPN4-212ENST00000488896 HMGXB3Q12766 1538 aa-0.08□□□□□ -2.42
PTPN4-212ENST00000488896 DNAJC13O75165 2243 aa-0.09□□□□□ -2.42
PTPN4-212ENST00000488896 PZPP20742 1482 aa-0.09□□□□□ -2.42
PTPN4-212ENST00000488896 BCL9LQ86UU0 1499 aa-0.09□□□□□ -2.42
PTPN4-212ENST00000488896 SETBP1Q9Y6X0 1596 aa-0.09□□□□□ -2.42
PTPN4-212ENST00000488896 C6orf201Q7Z4U5 140 aa-0.09□□□□□ -2.42
PTPN4-212ENST00000488896 TRGV9Q99603 122 aa-0.09□□□□□ -2.42
PTPN4-212ENST00000488896 TCEAL7Q9BRU2 100 aa-0.09□□□□□ -2.42
PTPN4-212ENST00000488896 LINC00846Q9NV44 126 aa-0.09□□□□□ -2.42
PTPN4-212ENST00000488896 GAPVD1Q14C86 1478 aa-0.1□□□□□ -2.42
PTPN4-212ENST00000488896 C1orf167Q5SNV9 1468 aa-0.1□□□□□ -2.42
PTPN4-212ENST00000488896 APC2O95996 2303 aa-0.1□□□□□ -2.43
PTPN4-212ENST00000488896 TET3O43151 1660 aa-0.1□□□□□ -2.43
PTPN4-212ENST00000488896 CUL7Q14999 1698 aa-0.1□□□□□ -2.43
PTPN4-212ENST00000488896 NDUFC1O43677 76 aa-0.1□□□□□ -2.43
PTPN4-212ENST00000488896 UQCRHP07919 91 aa-0.1□□□□□ -2.43
PTPN4-212ENST00000488896 ARMS2P0C7Q2 107 aa-0.1□□□□□ -2.43
PTPN4-212ENST00000488896 SPRR2DP22532 72 aa-0.1□□□□□ -2.43
PTPN4-212ENST00000488896 HEPN1Q6WQI6 88 aa-0.1□□□□□ -2.43
PTPN4-212ENST00000488896 PDCD11Q14690 1871 aaKnown RBP-0.1□□□□□ -2.43
PTPN4-212ENST00000488896 ADGRL2O95490 1459 aa-0.1□□□□□ -2.43
PTPN4-212ENST00000488896 MAGI1Q96QZ7 1491 aaPredicted RBP-0.1□□□□□ -2.43
PTPN4-212ENST00000488896 QRICH2Q9H0J4 1663 aa-0.11□□□□□ -2.43
PTPN4-212ENST00000488896 ARHGAP5Q13017 1502 aa-0.11□□□□□ -2.43
PTPN4-212ENST00000488896 TRBV25-1A0A075B6N4 114 aa-0.11□□□□□ -2.43
PTPN4-212ENST00000488896 TRAV30A0A087WSZ9 112 aa-0.11□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms