RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 LINC00959A0A1B0GUT2 108 aa10.52□□□□□ -0.73
HDAC6-220ENST00000477528 MRAPQ8TCY5 172 aa10.51□□□□□ -0.73
HDAC6-220ENST00000477528 CITED1Q99966 193 aa10.51□□□□□ -0.73
HDAC6-220ENST00000477528 C11orf72Q8NBR9 251 aa10.51□□□□□ -0.73
HDAC6-220ENST00000477528 LST1O00453 97 aa10.51□□□□□ -0.73
HDAC6-220ENST00000477528 SMIM1B2RUZ4 78 aa10.51□□□□□ -0.73
HDAC6-220ENST00000477528 LINC00694P0DN24 101 aa10.51□□□□□ -0.73
HDAC6-220ENST00000477528 MT-ATP8P03928 68 aa10.5□□□□□ -0.73
HDAC6-220ENST00000477528 CCL18P55774 89 aa10.5□□□□□ -0.73
HDAC6-220ENST00000477528 SMR3AQ99954 134 aa10.5□□□□□ -0.73
HDAC6-220ENST00000477528 H3BQ85 93 aa10.5□□□□□ -0.73
HDAC6-220ENST00000477528 FSHBP01225 129 aa10.5□□□□□ -0.73
HDAC6-220ENST00000477528 COX6A2Q02221 97 aa10.49□□□□□ -0.73
HDAC6-220ENST00000477528 CD164L2Q6UWJ8 174 aa10.49□□□□□ -0.73
HDAC6-220ENST00000477528 SPATA25Q9BR10 227 aa10.49□□□□□ -0.73
HDAC6-220ENST00000477528 TMEM256-PLSCR3K7ERE1 68 aa10.48□□□□□ -0.73
HDAC6-220ENST00000477528 AGRNO00468 2067 aa10.48□□□□□ -0.73
HDAC6-220ENST00000477528 RPL18AQ02543 176 aaKnown RBP10.47□□□□□ -0.73
HDAC6-220ENST00000477528 DIRC1Q969H9 104 aa10.47□□□□□ -0.73
HDAC6-220ENST00000477528 FHL2Q14192 279 aa10.47□□□□□ -0.73
HDAC6-220ENST00000477528 ADAMTSL4-AS1Q5T5F5 129 aa10.47□□□□□ -0.73
HDAC6-220ENST00000477528 ZNF292O60281 2723 aa10.46□□□□□ -0.73
HDAC6-220ENST00000477528 LINC00643Q86TS7 51 aa10.46□□□□□ -0.73
HDAC6-220ENST00000477528 XIRP2A4UGR9 3374 aa10.46□□□□□ -0.73
HDAC6-220ENST00000477528 C11orf45Q8TAV5 145 aa10.46□□□□□ -0.74
HDAC6-220ENST00000477528 C14orf132Q9NPU4 83 aa10.45□□□□□ -0.74
HDAC6-220ENST00000477528 FAM236AA0A1B0GUQ0 79 aa10.45□□□□□ -0.74
HDAC6-220ENST00000477528 FAM236BA0A1B0GV22 79 aa10.45□□□□□ -0.74
HDAC6-220ENST00000477528 FN1P02751 2386 aaKnown RBP10.45□□□□□ -0.74
HDAC6-220ENST00000477528 FHL3Q13643 280 aa10.45□□□□□ -0.74
HDAC6-220ENST00000477528 MTORP42345 2549 aa10.45□□□□□ -0.74
HDAC6-220ENST00000477528 LELP1Q5T871 98 aa10.44□□□□□ -0.74
HDAC6-220ENST00000477528 B5MCH6 92 aa10.44□□□□□ -0.74
HDAC6-220ENST00000477528 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.44□□□□□ -0.74
HDAC6-220ENST00000477528 IGKV3D-7A0A0C4DH55 119 aa10.44□□□□□ -0.74
HDAC6-220ENST00000477528 Q8IZM0 81 aa10.44□□□□□ -0.74
HDAC6-220ENST00000477528 HIGD2BQ4VC39 106 aa10.43□□□□□ -0.74
HDAC6-220ENST00000477528 CFAP54Q96N23 3096 aa10.43□□□□□ -0.74
HDAC6-220ENST00000477528 IGLV4-60A0A075B6I1 120 aa10.42□□□□□ -0.74
HDAC6-220ENST00000477528 A0A087WZ39 114 aa10.42□□□□□ -0.74
HDAC6-220ENST00000477528 RBM3P98179 157 aaKnown RBP10.42□□□□□ -0.74
HDAC6-220ENST00000477528 DNAH14Q0VDD8 3507 aa10.42□□□□□ -0.74
HDAC6-220ENST00000477528 ETDCA0A1B0GVM5 59 aa10.42□□□□□ -0.74
HDAC6-220ENST00000477528 RNF183Q96D59 192 aa10.42□□□□□ -0.74
HDAC6-220ENST00000477528 LAMA1P25391 3075 aa10.42□□□□□ -0.74
HDAC6-220ENST00000477528 JMJD1CQ15652 2540 aa10.41□□□□□ -0.74
HDAC6-220ENST00000477528 DEFB131BA0A096LNP1 70 aa10.41□□□□□ -0.74
HDAC6-220ENST00000477528 SHISA2Q6UWI4 295 aa10.41□□□□□ -0.74
HDAC6-220ENST00000477528 hADV29S1A0JD25 119 aa10.4□□□□□ -0.74
HDAC6-220ENST00000477528 ATOX1O00244 68 aa10.4□□□□□ -0.74
HDAC6-220ENST00000477528 COX7BP24311 80 aa10.4□□□□□ -0.74
HDAC6-220ENST00000477528 DEFB105AQ8NG35 78 aa10.4□□□□□ -0.74
HDAC6-220ENST00000477528 SMIM11BQ8TCY0 68 aa10.4□□□□□ -0.74
HDAC6-220ENST00000477528 EPG5Q9HCE0 2579 aa10.4□□□□□ -0.75
HDAC6-220ENST00000477528 COX17Q14061 63 aa10.39□□□□□ -0.75
HDAC6-220ENST00000477528 MGAQ8IWI9 3026 aa10.39□□□□□ -0.75
HDAC6-220ENST00000477528 IGHV4-30-4P0DP06 118 aa10.39□□□□□ -0.75
HDAC6-220ENST00000477528 A0A096LNT2 108 aa10.39□□□□□ -0.75
HDAC6-220ENST00000477528 SLPIP03973 132 aa10.38□□□□□ -0.75
HDAC6-220ENST00000477528 PDE6GP18545 87 aa10.38□□□□□ -0.75
HDAC6-220ENST00000477528 XGP55808 180 aa10.38□□□□□ -0.75
HDAC6-220ENST00000477528 NDUFV3P56181 108 aaKnown RBP10.38□□□□□ -0.75
HDAC6-220ENST00000477528 WDFY4Q6ZS81 3184 aa10.37□□□□□ -0.75
HDAC6-220ENST00000477528 C6orf99Q4VX62 202 aa10.37□□□□□ -0.75
HDAC6-220ENST00000477528 KPRPQ5T749 579 aaPredicted RBP10.37□□□□□ -0.75
HDAC6-220ENST00000477528 IGLV5-39A0A0G2JS06 123 aa10.37□□□□□ -0.75
HDAC6-220ENST00000477528 UBE2BP63146 152 aa10.36□□□□□ -0.75
HDAC6-220ENST00000477528 Q9UF83 564 aa10.36□□□□□ -0.75
HDAC6-220ENST00000477528 MUC7Q8TAX7 377 aa10.36□□□□□ -0.75
HDAC6-220ENST00000477528 A0A1B0GUV1 79 aa10.36□□□□□ -0.75
HDAC6-220ENST00000477528 NTM-AS1Q6ZSK4 140 aa10.36□□□□□ -0.75
HDAC6-220ENST00000477528 XAGE1AQ9HD64 81 aa10.36□□□□□ -0.75
HDAC6-220ENST00000477528 A0A1B0GX51 115 aa10.35□□□□□ -0.75
HDAC6-220ENST00000477528 RPL28P46779 137 aaKnown RBP10.35□□□□□ -0.75
HDAC6-220ENST00000477528 VPS13AQ96RL7 3174 aa10.35□□□□□ -0.75
HDAC6-220ENST00000477528 VCANP13611 3396 aa10.35□□□□□ -0.75
HDAC6-220ENST00000477528 FUSP35637 526 aaKnown RBP eCLIP10.35□□□□□ -0.75
HDAC6-220ENST00000477528 ACANP16112 2415 aa10.35□□□□□ -0.75
HDAC6-220ENST00000477528 IGLV5-45A0A087WSX0 123 aa10.34□□□□□ -0.75
HDAC6-220ENST00000477528 SS18L2Q9UHA2 77 aa10.34□□□□□ -0.75
HDAC6-220ENST00000477528 LINC00526Q96FQ7 95 aa10.34□□□□□ -0.75
HDAC6-220ENST00000477528 A8MTW9 85 aa10.33□□□□□ -0.76
HDAC6-220ENST00000477528 M0QXV9 152 aa10.33□□□□□ -0.76
HDAC6-220ENST00000477528 PKIGQ9Y2B9 76 aa10.33□□□□□ -0.76
HDAC6-220ENST00000477528 OXLD1Q5BKU9 147 aa10.32□□□□□ -0.76
HDAC6-220ENST00000477528 FAM240AA0A1B0GVK7 77 aa10.32□□□□□ -0.76
HDAC6-220ENST00000477528 CYSRT1A8MQ03 144 aa10.3□□□□□ -0.76
HDAC6-220ENST00000477528 SYCNQ0VAF6 134 aa10.3□□□□□ -0.76
HDAC6-220ENST00000477528 TRAV23DV6A0A075B6W5 121 aa10.3□□□□□ -0.76
HDAC6-220ENST00000477528 NREPQ16612 68 aa10.3□□□□□ -0.76
HDAC6-220ENST00000477528 IMUPQ9GZP8 106 aa10.3□□□□□ -0.76
HDAC6-220ENST00000477528 LINC01561Q8N1V8 128 aa10.29□□□□□ -0.76
HDAC6-220ENST00000477528 TRAV10A0A0B4J240 114 aa10.29□□□□□ -0.76
HDAC6-220ENST00000477528 PRO0461Q9UI25 63 aa10.29□□□□□ -0.76
HDAC6-220ENST00000477528 SDIM1Q6ZPB5 146 aa10.28□□□□□ -0.76
HDAC6-220ENST00000477528 UNQ6190/PRO20217Q6UXQ8 127 aa10.28□□□□□ -0.76
HDAC6-220ENST00000477528 ZNF575Q86XF7 245 aa10.28□□□□□ -0.76
HDAC6-220ENST00000477528 IGHV3OR16-9A0A0B4J2B5 98 aa10.28□□□□□ -0.76
HDAC6-220ENST00000477528 ATP5EP2Q5VTU8 51 aa10.27□□□□□ -0.77
HDAC6-220ENST00000477528 MUC4Q99102 2169 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms