RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 IGLV2-18A0A075B6J9 118 aa3.65□□□□□ -1.83
CCDC39-204ENST00000476379 A6NDX4 124 aa3.65□□□□□ -1.83
CCDC39-204ENST00000476379 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.65□□□□□ -1.83
CCDC39-204ENST00000476379 CCL24O00175 119 aa3.65□□□□□ -1.83
CCDC39-204ENST00000476379 COX6A2Q02221 97 aa3.65□□□□□ -1.83
CCDC39-204ENST00000476379 LAMTOR3Q9UHA4 124 aa3.65□□□□□ -1.83
CCDC39-204ENST00000476379 ANK3Q12955 4377 aaKnown RBP3.65□□□□□ -1.83
CCDC39-204ENST00000476379 CCDC179H3BU77 68 aa3.64□□□□□ -1.83
CCDC39-204ENST00000476379 BAALC-AS2P0C853 105 aa3.64□□□□□ -1.83
CCDC39-204ENST00000476379 IGHV4-28A0A0C4DH34 117 aa3.64□□□□□ -1.83
CCDC39-204ENST00000476379 DNAJC9-AS1A6NH13 148 aa3.64□□□□□ -1.83
CCDC39-204ENST00000476379 A8MTW9 85 aa3.64□□□□□ -1.83
CCDC39-204ENST00000476379 LECT2O14960 151 aa3.64□□□□□ -1.83
CCDC39-204ENST00000476379 IGHV3-30P01768 117 aa3.64□□□□□ -1.83
CCDC39-204ENST00000476379 IGHV3-30-5P0DP03 117 aa3.64□□□□□ -1.83
CCDC39-204ENST00000476379 SMCPP49901 116 aaPredicted RBP3.64□□□□□ -1.83
CCDC39-204ENST00000476379 MAP6D1Q9H9H5 199 aa3.64□□□□□ -1.83
CCDC39-204ENST00000476379 HIGD1BQ9P298 99 aa3.64□□□□□ -1.83
CCDC39-204ENST00000476379 LGALS9O00182 355 aa3.64□□□□□ -1.83
CCDC39-204ENST00000476379 NCR3O14931 201 aa3.64□□□□□ -1.83
CCDC39-204ENST00000476379 IGHV3-33P01772 117 aa3.64□□□□□ -1.83
CCDC39-204ENST00000476379 SCXQ7RTU7 201 aa3.64□□□□□ -1.83
CCDC39-204ENST00000476379 LEPROTO15243 131 aa3.64□□□□□ -1.83
CCDC39-204ENST00000476379 HAMPP81172 84 aa3.64□□□□□ -1.83
CCDC39-204ENST00000476379 CFAP126Q5VTH2 177 aa3.64□□□□□ -1.83
CCDC39-204ENST00000476379 SDIM1Q6ZPB5 146 aa3.64□□□□□ -1.83
CCDC39-204ENST00000476379 K7EQG2 157 aa3.63□□□□□ -1.83
CCDC39-204ENST00000476379 GYPEP15421 78 aa3.63□□□□□ -1.83
CCDC39-204ENST00000476379 C9orf116Q5BN46 136 aaPredicted RBP3.63□□□□□ -1.83
CCDC39-204ENST00000476379 IFITM1P13164 125 aa3.63□□□□□ -1.83
CCDC39-204ENST00000476379 RHOHQ15669 191 aa3.63□□□□□ -1.83
CCDC39-204ENST00000476379 C9orf153Q5TBE3 101 aa3.63□□□□□ -1.83
CCDC39-204ENST00000476379 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.63□□□□□ -1.83
CCDC39-204ENST00000476379 SLC25A29Q8N8R3 303 aa3.63□□□□□ -1.83
CCDC39-204ENST00000476379 DEFB105AQ8NG35 78 aa3.63□□□□□ -1.83
CCDC39-204ENST00000476379 BRK1Q8WUW1 75 aa3.63□□□□□ -1.83
CCDC39-204ENST00000476379 FAM110AQ9BQ89 295 aa3.63□□□□□ -1.83
CCDC39-204ENST00000476379 TMEM243Q9BU79 118 aa3.63□□□□□ -1.83
CCDC39-204ENST00000476379 IGIPA6NJ69 53 aa3.63□□□□□ -1.83
CCDC39-204ENST00000476379 POLR2KP53803 58 aaKnown RBP3.63□□□□□ -1.83
CCDC39-204ENST00000476379 EBI3Q14213 229 aa3.63□□□□□ -1.83
CCDC39-204ENST00000476379 Q8N3U1 123 aa3.63□□□□□ -1.83
CCDC39-204ENST00000476379 COPS9Q8WXC6 57 aa3.63□□□□□ -1.83
CCDC39-204ENST00000476379 VSIG2Q96IQ7 327 aa3.63□□□□□ -1.83
CCDC39-204ENST00000476379 SND1-IT1Q9HBX3 110 aa3.63□□□□□ -1.83
CCDC39-204ENST00000476379 KLK5Q9Y337 293 aaPredicted RBP3.63□□□□□ -1.83
CCDC39-204ENST00000476379 FHL3Q13643 280 aa3.62□□□□□ -1.83
CCDC39-204ENST00000476379 XAGE1AQ9HD64 81 aa3.62□□□□□ -1.83
CCDC39-204ENST00000476379 A0A087WVE0 104 aa3.62□□□□□ -1.83
CCDC39-204ENST00000476379 TMEM223A0PJW6 202 aa3.62□□□□□ -1.83
CCDC39-204ENST00000476379 C1orf195Q5TG92 126 aa3.62□□□□□ -1.83
CCDC39-204ENST00000476379 DPH3Q96FX2 82 aa3.62□□□□□ -1.83
CCDC39-204ENST00000476379 TRAV25A0A0B4J276 109 aa3.62□□□□□ -1.83
CCDC39-204ENST00000476379 TRBV6-1A0A0K0K1D8 114 aa3.62□□□□□ -1.83
CCDC39-204ENST00000476379 DAD1P61803 113 aa3.62□□□□□ -1.83
CCDC39-204ENST00000476379 TAL2Q16559 108 aa3.62□□□□□ -1.83
CCDC39-204ENST00000476379 IGHV1-58A0A0C4DH39 117 aa3.62□□□□□ -1.83
CCDC39-204ENST00000476379 RBMY1BA6NDE4 496 aaKnown RBP3.62□□□□□ -1.83
CCDC39-204ENST00000476379 RBMY1EA6NEQ0 496 aaKnown RBP3.62□□□□□ -1.83
CCDC39-204ENST00000476379 RBMY1DP0C7P1 496 aaKnown RBP3.62□□□□□ -1.83
CCDC39-204ENST00000476379 PSMB8P28062 276 aa3.62□□□□□ -1.83
CCDC39-204ENST00000476379 KRTAP1-1Q07627 177 aa3.62□□□□□ -1.83
CCDC39-204ENST00000476379 DAZ2Q13117 558 aaKnown RBP3.62□□□□□ -1.83
CCDC39-204ENST00000476379 DAZ4Q86SG3 579 aaKnown RBP3.62□□□□□ -1.83
CCDC39-204ENST00000476379 LINC00269Q8N2A0 174 aa3.62□□□□□ -1.83
CCDC39-204ENST00000476379 DAZ3Q9NR90 486 aaKnown RBP3.62□□□□□ -1.83
CCDC39-204ENST00000476379 HIGD2BQ4VC39 106 aa3.61□□□□□ -1.83
CCDC39-204ENST00000476379 Q8N2B8 174 aa3.61□□□□□ -1.83
CCDC39-204ENST00000476379 TIMM17AQ99595 171 aa3.61□□□□□ -1.83
CCDC39-204ENST00000476379 CSMD3Q7Z407 3707 aa3.61□□□□□ -1.83
CCDC39-204ENST00000476379 KLLNB2CW77 178 aa3.61□□□□□ -1.83
CCDC39-204ENST00000476379 ZNF575Q86XF7 245 aa3.61□□□□□ -1.83
CCDC39-204ENST00000476379 MDFIQ99750 246 aa3.61□□□□□ -1.83
CCDC39-204ENST00000476379 CNFNQ9BYD5 112 aa3.61□□□□□ -1.83
CCDC39-204ENST00000476379 LENEPQ9Y5L5 61 aa3.61□□□□□ -1.83
CCDC39-204ENST00000476379 DEFB121Q5J5C9 76 aa3.6□□□□□ -1.83
CCDC39-204ENST00000476379 KLK12Q9UKR0 248 aa3.6□□□□□ -1.83
CCDC39-204ENST00000476379 A0A096LNT2 108 aa3.6□□□□□ -1.83
CCDC39-204ENST00000476379 K7EQD1 137 aa3.6□□□□□ -1.83
CCDC39-204ENST00000476379 DNAJC30Q96LL9 226 aa3.6□□□□□ -1.83
CCDC39-204ENST00000476379 ZMAT4Q9H898 229 aa3.6□□□□□ -1.83
CCDC39-204ENST00000476379 IGLV4-60A0A075B6I1 120 aa3.6□□□□□ -1.83
CCDC39-204ENST00000476379 TRBV27A0A0K0K1C4 114 aa3.6□□□□□ -1.83
CCDC39-204ENST00000476379 SOCS3O14543 225 aa3.6□□□□□ -1.83
CCDC39-204ENST00000476379 TRAV23DV6A0A075B6W5 121 aa3.6□□□□□ -1.83
CCDC39-204ENST00000476379 LINC00315P59091 139 aa3.6□□□□□ -1.83
CCDC39-204ENST00000476379 ODF3L2Q3SX64 289 aa3.6□□□□□ -1.83
CCDC39-204ENST00000476379 TMEM86BQ8N661 226 aa3.6□□□□□ -1.83
CCDC39-204ENST00000476379 LINC00308Q8TCZ7 52 aa3.6□□□□□ -1.83
CCDC39-204ENST00000476379 COX7B2Q8TF08 81 aa3.6□□□□□ -1.83
CCDC39-204ENST00000476379 CDIP1Q9H305 208 aa3.6□□□□□ -1.83
CCDC39-204ENST00000476379 H7C423 109 aa3.59□□□□□ -1.83
CCDC39-204ENST00000476379 DEFB114Q30KQ6 69 aa3.59□□□□□ -1.83
CCDC39-204ENST00000476379 ZNF702PQ9H963 129 aa3.59□□□□□ -1.83
CCDC39-204ENST00000476379 HERVK_113P63121 156 aa3.59□□□□□ -1.83
CCDC39-204ENST00000476379 RPL18AQ02543 176 aaKnown RBP3.59□□□□□ -1.83
CCDC39-204ENST00000476379 SPATA25Q9BR10 227 aa3.59□□□□□ -1.83
CCDC39-204ENST00000476379 TRBV10-2A0A0K0K1G8 114 aa3.59□□□□□ -1.84
CCDC39-204ENST00000476379 M0QXV9 152 aa3.59□□□□□ -1.84
CCDC39-204ENST00000476379 NDUFV3P56181 108 aaKnown RBP3.59□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms