RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 PAX4O43316 350 aa6.81□□□□□ -1.32
USP39-214ENST00000474572 IGHV3-33P01772 117 aa6.81□□□□□ -1.32
USP39-214ENST00000474572 ATP5G1P05496 136 aa6.81□□□□□ -1.32
USP39-214ENST00000474572 SPART-AS1P0CW21 52 aa6.81□□□□□ -1.32
USP39-214ENST00000474572 DAD1P61803 113 aa6.81□□□□□ -1.32
USP39-214ENST00000474572 HERV-K104P63124 156 aa6.81□□□□□ -1.32
USP39-214ENST00000474572 LYRM7Q5U5X0 104 aa6.81□□□□□ -1.32
USP39-214ENST00000474572 SHISA2Q6UWI4 295 aa6.81□□□□□ -1.32
USP39-214ENST00000474572 CHCHD5Q9BSY4 110 aa6.81□□□□□ -1.32
USP39-214ENST00000474572 PRO0461Q9UI25 63 aa6.81□□□□□ -1.32
USP39-214ENST00000474572 NOTCH3Q9UM47 2321 aa6.81□□□□□ -1.32
USP39-214ENST00000474572 TEX48A0A1B0GUV7 120 aa6.8□□□□□ -1.32
USP39-214ENST00000474572 KRTAP10-11P60412 298 aa6.8□□□□□ -1.32
USP39-214ENST00000474572 LINC01561Q8N1V8 128 aa6.8□□□□□ -1.32
USP39-214ENST00000474572 Q9H8V8 135 aa6.8□□□□□ -1.32
USP39-214ENST00000474572 SETD2Q9BYW2 2564 aaPredicted RBP6.8□□□□□ -1.32
USP39-214ENST00000474572 NOTCH2Q04721 2471 aa6.79□□□□□ -1.32
USP39-214ENST00000474572 A0A087WZ39 114 aa6.79□□□□□ -1.32
USP39-214ENST00000474572 LINC00959A0A1B0GUT2 108 aa6.79□□□□□ -1.32
USP39-214ENST00000474572 F8W1H4 67 aa6.79□□□□□ -1.32
USP39-214ENST00000474572 RBX1P62877 108 aa6.79□□□□□ -1.32
USP39-214ENST00000474572 OCIAD2Q56VL3 154 aa6.79□□□□□ -1.32
USP39-214ENST00000474572 OXLD1Q5BKU9 147 aa6.79□□□□□ -1.32
USP39-214ENST00000474572 NIPBLQ6KC79 2804 aaeCLIP6.79□□□□□ -1.32
USP39-214ENST00000474572 DEFB4AO15263 64 aa6.78□□□□□ -1.32
USP39-214ENST00000474572 CIRBPQ14011 172 aaKnown RBP6.78□□□□□ -1.32
USP39-214ENST00000474572 TRBV20-1A0A075B6N2 111 aa6.77□□□□□ -1.33
USP39-214ENST00000474572 H3BMG7 143 aa6.77□□□□□ -1.33
USP39-214ENST00000474572 SH2D6Q7Z4S9 175 aa6.77□□□□□ -1.33
USP39-214ENST00000474572 COX7B2Q8TF08 81 aa6.77□□□□□ -1.33
USP39-214ENST00000474572 ERG28Q9UKR5 140 aa6.77□□□□□ -1.33
USP39-214ENST00000474572 TRBV30A0A0K0K1B3 111 aa6.76□□□□□ -1.33
USP39-214ENST00000474572 K7ERU9 68 aa6.76□□□□□ -1.33
USP39-214ENST00000474572 MRPL23Q16540 153 aaKnown RBP6.76□□□□□ -1.33
USP39-214ENST00000474572 PRIMA1Q86XR5 153 aa6.76□□□□□ -1.33
USP39-214ENST00000474572 LINC00308Q8TCZ7 52 aa6.76□□□□□ -1.33
USP39-214ENST00000474572 C11orf68Q9H3H3 251 aaKnown RBP6.76□□□□□ -1.33
USP39-214ENST00000474572 VWFP04275 2813 aa6.75□□□□□ -1.33
USP39-214ENST00000474572 TENM1Q9UKZ4 2725 aa6.75□□□□□ -1.33
USP39-214ENST00000474572 TEP1Q99973 2627 aaKnown RBP6.75□□□□□ -1.33
USP39-214ENST00000474572 A0A096LPF7 62 aa6.75□□□□□ -1.33
USP39-214ENST00000474572 LOC107984156A0A0G2JMH3 177 aa6.75□□□□□ -1.33
USP39-214ENST00000474572 H3BNG1 76 aa6.75□□□□□ -1.33
USP39-214ENST00000474572 TCL1BO95988 128 aa6.75□□□□□ -1.33
USP39-214ENST00000474572 PRSS2P07478 247 aa6.75□□□□□ -1.33
USP39-214ENST00000474572 SS18Q15532 418 aa6.75□□□□□ -1.33
USP39-214ENST00000474572 LELP1Q5T871 98 aa6.75□□□□□ -1.33
USP39-214ENST00000474572 SFTA2Q6UW10 78 aa6.75□□□□□ -1.33
USP39-214ENST00000474572 SOSTDC1Q6X4U4 206 aa6.75□□□□□ -1.33
USP39-214ENST00000474572 ARL17AQ8IVW1 177 aa6.75□□□□□ -1.33
USP39-214ENST00000474572 C3orf56Q8N813 242 aa6.75□□□□□ -1.33
USP39-214ENST00000474572 COPS9Q8WXC6 57 aa6.75□□□□□ -1.33
USP39-214ENST00000474572 ICOSQ9Y6W8 199 aa6.75□□□□□ -1.33
USP39-214ENST00000474572 WFDC2Q14508 124 aa6.74□□□□□ -1.33
USP39-214ENST00000474572 MEIG1Q5JSS6 88 aa6.74□□□□□ -1.33
USP39-214ENST00000474572 LINC01600Q96MT4 127 aa6.74□□□□□ -1.33
USP39-214ENST00000474572 IGKV3OR2-268A0A0C4DH90 116 aa6.73□□□□□ -1.33
USP39-214ENST00000474572 CYSRT1A8MQ03 144 aa6.73□□□□□ -1.33
USP39-214ENST00000474572 TMEM262E9PQX1 116 aa6.73□□□□□ -1.33
USP39-214ENST00000474572 G3V4G9 280 aa6.73□□□□□ -1.33
USP39-214ENST00000474572 M0QXV9 152 aa6.73□□□□□ -1.33
USP39-214ENST00000474572 PSMB2P49721 201 aa6.73□□□□□ -1.33
USP39-214ENST00000474572 SMCPP49901 116 aaPredicted RBP6.73□□□□□ -1.33
USP39-214ENST00000474572 Q8IZM0 81 aa6.73□□□□□ -1.33
USP39-214ENST00000474572 DAND5Q8N907 189 aa6.73□□□□□ -1.33
USP39-214ENST00000474572 F8P00451 2351 aa6.73□□□□□ -1.33
USP39-214ENST00000474572 IBA57-AS1B1ANH7 110 aa6.72□□□□□ -1.33
USP39-214ENST00000474572 TRIAP1O43715 76 aa6.72□□□□□ -1.33
USP39-214ENST00000474572 NPC2P61916 151 aa6.72□□□□□ -1.33
USP39-214ENST00000474572 C5orf38Q86SI9 138 aa6.72□□□□□ -1.33
USP39-214ENST00000474572 RETNQ9HD89 108 aa6.72□□□□□ -1.33
USP39-214ENST00000474572 CD164L2Q6UWJ8 174 aa6.71□□□□□ -1.34
USP39-214ENST00000474572 RPL13AP40429 203 aaKnown RBP6.7□□□□□ -1.34
USP39-214ENST00000474572 XCL1P47992 114 aa6.7□□□□□ -1.34
USP39-214ENST00000474572 REG3AQ06141 175 aa6.7□□□□□ -1.34
USP39-214ENST00000474572 LINC00269Q8N2A0 174 aa6.7□□□□□ -1.34
USP39-214ENST00000474572 PRR34Q9NV39 138 aa6.7□□□□□ -1.34
USP39-214ENST00000474572 TOMM7Q9P0U1 55 aa6.7□□□□□ -1.34
USP39-214ENST00000474572 CBY1Q9Y3M2 126 aa6.7□□□□□ -1.34
USP39-214ENST00000474572 ANGP03950 147 aaKnown RBP6.69□□□□□ -1.34
USP39-214ENST00000474572 SCGB1C2P0DMR2 95 aa6.69□□□□□ -1.34
USP39-214ENST00000474572 HTN3P15516 51 aa6.69□□□□□ -1.34
USP39-214ENST00000474572 CXCL5P42830 114 aa6.69□□□□□ -1.34
USP39-214ENST00000474572 KIAA0087Q14695 138 aa6.69□□□□□ -1.34
USP39-214ENST00000474572 ATXN8Q156A1 80 aa6.69□□□□□ -1.34
USP39-214ENST00000474572 Q1RN00 199 aa6.69□□□□□ -1.34
USP39-214ENST00000474572 ETDBQ3ZM63 59 aa6.69□□□□□ -1.34
USP39-214ENST00000474572 CLPSL2Q6UWE3 100 aa6.69□□□□□ -1.34
USP39-214ENST00000474572 LYPD5Q6UWN5 251 aa6.69□□□□□ -1.34
USP39-214ENST00000474572 MTURNQ8N3F0 131 aa6.69□□□□□ -1.34
USP39-214ENST00000474572 Q8N3U1 123 aa6.69□□□□□ -1.34
USP39-214ENST00000474572 MIR7-3HGQ8N6C7 128 aa6.69□□□□□ -1.34
USP39-214ENST00000474572 ATRQ13535 2644 aa6.68□□□□□ -1.34
USP39-214ENST00000474572 A0A0U1RRA0 63 aa6.68□□□□□ -1.34
USP39-214ENST00000474572 H7C2G1 150 aa6.68□□□□□ -1.34
USP39-214ENST00000474572 J3QR89 54 aa6.68□□□□□ -1.34
USP39-214ENST00000474572 FOXI1Q12951 378 aa6.68□□□□□ -1.34
USP39-214ENST00000474572 LINC01620Q4KN68 170 aa6.68□□□□□ -1.34
USP39-214ENST00000474572 CHCHD10Q8WYQ3 142 aaPredicted RBP6.68□□□□□ -1.34
USP39-214ENST00000474572 LST1O00453 97 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 1601.6 ms