RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SPTBN4Q9H254 2564 aa9.93□□□□□ -0.82
COL6A3-209ENST00000472056 IGLV2-11P01706 119 aa9.93□□□□□ -0.82
COL6A3-209ENST00000472056 IGHV4-38-2P0DP08 117 aa9.92□□□□□ -0.82
COL6A3-209ENST00000472056 A0A0J9YWU9 116 aa9.92□□□□□ -0.82
COL6A3-209ENST00000472056 CSDC2Q9Y534 153 aaKnown RBP9.92□□□□□ -0.82
COL6A3-209ENST00000472056 Q6ZVQ6 151 aa9.92□□□□□ -0.82
COL6A3-209ENST00000472056 NTM-AS1Q6ZSK4 140 aa9.92□□□□□ -0.82
COL6A3-209ENST00000472056 KLLNB2CW77 178 aa9.91□□□□□ -0.82
COL6A3-209ENST00000472056 FRMD6-AS1P0C7T7 363 aa9.91□□□□□ -0.82
COL6A3-209ENST00000472056 SCXQ7RTU7 201 aa9.91□□□□□ -0.82
COL6A3-209ENST00000472056 UNQ9165/PRO28630Q6UXU0 137 aa9.91□□□□□ -0.82
COL6A3-209ENST00000472056 SMIM11BQ8TCY0 68 aa9.91□□□□□ -0.82
COL6A3-209ENST00000472056 HRCT1Q6UXD1 115 aa9.91□□□□□ -0.82
COL6A3-209ENST00000472056 C7orf33Q8WU49 177 aa9.91□□□□□ -0.82
COL6A3-209ENST00000472056 TRBV7-6A0A0J9YX20 115 aa9.91□□□□□ -0.82
COL6A3-209ENST00000472056 A6NDX4 124 aa9.91□□□□□ -0.82
COL6A3-209ENST00000472056 hDV103S1A0JD37 113 aa9.9□□□□□ -0.82
COL6A3-209ENST00000472056 CRYGDP07320 174 aa9.9□□□□□ -0.82
COL6A3-209ENST00000472056 DEFB135Q30KP9 77 aa9.9□□□□□ -0.82
COL6A3-209ENST00000472056 ZNF73O43830 326 aaPredicted RBP9.9□□□□□ -0.82
COL6A3-209ENST00000472056 POLR2KP53803 58 aaKnown RBP9.9□□□□□ -0.82
COL6A3-209ENST00000472056 ZNF295-AS1Q8N0V1 137 aa9.9□□□□□ -0.82
COL6A3-209ENST00000472056 Q8N976 141 aa9.9□□□□□ -0.82
COL6A3-209ENST00000472056 IGHV4-61A0A0C4DH41 118 aa9.9□□□□□ -0.82
COL6A3-209ENST00000472056 TRBV7-7A0A0K0K1E9 115 aa9.9□□□□□ -0.82
COL6A3-209ENST00000472056 Q8N7P7 452 aa9.9□□□□□ -0.82
COL6A3-209ENST00000472056 TSHBP01222 138 aa9.9□□□□□ -0.82
COL6A3-209ENST00000472056 CHCHD7Q9BUK0 85 aa9.89□□□□□ -0.83
COL6A3-209ENST00000472056 A0A087WZ39 114 aa9.89□□□□□ -0.83
COL6A3-209ENST00000472056 C11orf45Q8TAV5 145 aa9.89□□□□□ -0.83
COL6A3-209ENST00000472056 IGLV4-69A0A075B6H9 119 aa9.88□□□□□ -0.83
COL6A3-209ENST00000472056 SYCNQ0VAF6 134 aa9.88□□□□□ -0.83
COL6A3-209ENST00000472056 C10orf25Q5T742 122 aa9.88□□□□□ -0.83
COL6A3-209ENST00000472056 Q8N814 137 aa9.88□□□□□ -0.83
COL6A3-209ENST00000472056 Q6ZQY7 126 aa9.88□□□□□ -0.83
COL6A3-209ENST00000472056 CRIP1P50238 77 aa9.88□□□□□ -0.83
COL6A3-209ENST00000472056 IGHV4-30-2A0A087WSY4 118 aa9.87□□□□□ -0.83
COL6A3-209ENST00000472056 FAM19A1Q7Z5A9 133 aa9.87□□□□□ -0.83
COL6A3-209ENST00000472056 LINC01561Q8N1V8 128 aa9.87□□□□□ -0.83
COL6A3-209ENST00000472056 COX8CQ7Z4L0 72 aa9.87□□□□□ -0.83
COL6A3-209ENST00000472056 CHD8Q9HCK8 2581 aa9.87□□□□□ -0.83
COL6A3-209ENST00000472056 FAM30AQ9NZY2 134 aa9.86□□□□□ -0.83
COL6A3-209ENST00000472056 LELP1Q5T871 98 aa9.86□□□□□ -0.83
COL6A3-209ENST00000472056 HILS1P60008 231 aa9.86□□□□□ -0.83
COL6A3-209ENST00000472056 CEMP1Q6PRD7 247 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-209ENST00000472056 CELA1Q9UNI1 258 aa9.85□□□□□ -0.83
COL6A3-209ENST00000472056 DEFB114Q30KQ6 69 aa9.85□□□□□ -0.83
COL6A3-209ENST00000472056 Q6ZTI0 123 aa9.85□□□□□ -0.83
COL6A3-209ENST00000472056 IGIPA6NJ69 53 aa9.85□□□□□ -0.83
COL6A3-209ENST00000472056 J3QKU1 62 aa9.84□□□□□ -0.83
COL6A3-209ENST00000472056 PRRC2CQ9Y520 2896 aaKnown RBP9.84□□□□□ -0.83
COL6A3-209ENST00000472056 LY6LH3BQJ8 138 aa9.84□□□□□ -0.83
COL6A3-209ENST00000472056 IGKV2-24A0A0C4DH68 120 aa9.83□□□□□ -0.84
COL6A3-209ENST00000472056 NANOS2P60321 138 aaKnown RBP9.83□□□□□ -0.84
COL6A3-209ENST00000472056 SPRNQ5BIV9 151 aa9.83□□□□□ -0.84
COL6A3-209ENST00000472056 SLPIP03973 132 aa9.83□□□□□ -0.84
COL6A3-209ENST00000472056 CRYGAP11844 174 aa9.83□□□□□ -0.84
COL6A3-209ENST00000472056 MAPK1IP1LQ8NDC0 245 aa9.83□□□□□ -0.84
COL6A3-209ENST00000472056 ESRGQ1W209 222 aa9.82□□□□□ -0.84
COL6A3-209ENST00000472056 RNASE3P12724 160 aaKnown RBP9.82□□□□□ -0.84
COL6A3-209ENST00000472056 ZFP36P26651 326 aaKnown RBP9.82□□□□□ -0.84
COL6A3-209ENST00000472056 WFDC13Q8IUB5 93 aa9.82□□□□□ -0.84
COL6A3-209ENST00000472056 SPAG11AQ6PDA7 123 aa9.81□□□□□ -0.84
COL6A3-209ENST00000472056 PSPHP1O15172 72 aa9.81□□□□□ -0.84
COL6A3-209ENST00000472056 BRWD1-AS2P59051 145 aa9.81□□□□□ -0.84
COL6A3-209ENST00000472056 CR1P17927 2039 aa9.81□□□□□ -0.84
COL6A3-209ENST00000472056 ESM1Q9NQ30 184 aa9.81□□□□□ -0.84
COL6A3-209ENST00000472056 Q8N3U1 123 aa9.8□□□□□ -0.84
COL6A3-209ENST00000472056 IGHV4-30-4P0DP06 118 aa9.8□□□□□ -0.84
COL6A3-209ENST00000472056 IGHV4-31P0DP07 118 aa9.8□□□□□ -0.84
COL6A3-209ENST00000472056 TP53AIP1Q9HCN2 124 aa9.79□□□□□ -0.84
COL6A3-209ENST00000472056 EGFEM1PQ0D2K5 195 aa9.79□□□□□ -0.84
COL6A3-209ENST00000472056 C22orf34Q6ZV56 151 aa9.79□□□□□ -0.84
COL6A3-209ENST00000472056 CDC42SE2Q9NRR3 84 aa9.79□□□□□ -0.84
COL6A3-209ENST00000472056 TMEM254Q8TBM7 123 aa9.79□□□□□ -0.84
COL6A3-209ENST00000472056 Q6YL49 198 aa9.78□□□□□ -0.84
COL6A3-209ENST00000472056 PSMG3-AS1Q96PY0 264 aa9.78□□□□□ -0.84
COL6A3-209ENST00000472056 SOSTDC1Q6X4U4 206 aa9.78□□□□□ -0.84
COL6A3-209ENST00000472056 A0A096LNI7 61 aa9.77□□□□□ -0.85
COL6A3-209ENST00000472056 A8MZ25 164 aa9.77□□□□□ -0.85
COL6A3-209ENST00000472056 SPINK6Q6UWN8 80 aa9.77□□□□□ -0.85
COL6A3-209ENST00000472056 LINC00959A0A1B0GUT2 108 aa9.77□□□□□ -0.85
COL6A3-209ENST00000472056 H3BPC8 53 aa9.77□□□□□ -0.85
COL6A3-209ENST00000472056 BRI3O95415 125 aa9.77□□□□□ -0.85
COL6A3-209ENST00000472056 C1orf137Q5JT78 98 aa9.77□□□□□ -0.85
COL6A3-209ENST00000472056 LINC00208Q96KT6 92 aa9.76□□□□□ -0.85
COL6A3-209ENST00000472056 USP24Q9UPU5 2620 aa9.76□□□□□ -0.85
COL6A3-209ENST00000472056 LRCOL1A6NCL2 159 aa9.76□□□□□ -0.85
COL6A3-209ENST00000472056 DEFB131BA0A096LNP1 70 aa9.76□□□□□ -0.85
COL6A3-209ENST00000472056 DNAJC9-AS1A6NH13 148 aa9.75□□□□□ -0.85
COL6A3-209ENST00000472056 AMELXQ99217 191 aa9.75□□□□□ -0.85
COL6A3-209ENST00000472056 ZNF580Q9UK33 172 aa9.75□□□□□ -0.85
COL6A3-209ENST00000472056 Q6ZS46 218 aa9.75□□□□□ -0.85
COL6A3-209ENST00000472056 LINC01546A6NGU7 62 aa9.75□□□□□ -0.85
COL6A3-209ENST00000472056 A0A1B0GUV1 79 aa9.75□□□□□ -0.85
COL6A3-209ENST00000472056 TRAV10A0A0B4J240 114 aa9.74□□□□□ -0.85
COL6A3-209ENST00000472056 XAGE1AQ9HD64 81 aa9.74□□□□□ -0.85
COL6A3-209ENST00000472056 DCANP1Q8TF63 244 aa9.74□□□□□ -0.85
COL6A3-209ENST00000472056 LMO4P61968 165 aa9.73□□□□□ -0.85
COL6A3-209ENST00000472056 ADORA2A-AS1P86434 159 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms