RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 LOC100131303A0A0U1RQF7 123 aa4□□□□□ -1.77
SYNE1-219ENST00000469439 TINCRA0A1B0GVN0 87 aa4□□□□□ -1.77
SYNE1-219ENST00000469439 IGKV2-29A2NJV5 120 aaPredicted RBP4□□□□□ -1.77
SYNE1-219ENST00000469439 LINC00587B1AMM8 73 aa4□□□□□ -1.77
SYNE1-219ENST00000469439 GAS8-AS1O95177 125 aa4□□□□□ -1.77
SYNE1-219ENST00000469439 DNAH10OSP0CZ25 163 aa4□□□□□ -1.77
SYNE1-219ENST00000469439 SMIM6P0DI80 62 aa4□□□□□ -1.77
SYNE1-219ENST00000469439 GAGE6Q13070 117 aa4□□□□□ -1.77
SYNE1-219ENST00000469439 NTM-AS1Q6ZSK4 140 aa4□□□□□ -1.77
SYNE1-219ENST00000469439 LINC01561Q8N1V8 128 aa4□□□□□ -1.77
SYNE1-219ENST00000469439 CST9LQ9H4G1 147 aa4□□□□□ -1.77
SYNE1-219ENST00000469439 PKIGQ9Y2B9 76 aa4□□□□□ -1.77
SYNE1-219ENST00000469439 CHTOPQ9Y3Y2 248 aaKnown RBP4□□□□□ -1.77
SYNE1-219ENST00000469439 ANK2Q01484 3957 aa3.99□□□□□ -1.77
SYNE1-219ENST00000469439 IGLV4-3A0A075B6K6 122 aa3.99□□□□□ -1.77
SYNE1-219ENST00000469439 F8WDY8 70 aa3.99□□□□□ -1.77
SYNE1-219ENST00000469439 IGKCP01834 107 aa3.99□□□□□ -1.77
SYNE1-219ENST00000469439 RBX1P62877 108 aa3.99□□□□□ -1.77
SYNE1-219ENST00000469439 RPL39P62891 51 aaKnown RBP3.99□□□□□ -1.77
SYNE1-219ENST00000469439 JOSD1Q15040 202 aaPredicted RBP3.99□□□□□ -1.77
SYNE1-219ENST00000469439 ESRGQ1W209 222 aa3.99□□□□□ -1.77
SYNE1-219ENST00000469439 LINC01545Q5VT33 79 aa3.99□□□□□ -1.77
SYNE1-219ENST00000469439 BAALCQ8WXS3 180 aa3.99□□□□□ -1.77
SYNE1-219ENST00000469439 URB1-AS1Q96HZ7 61 aa3.99□□□□□ -1.77
SYNE1-219ENST00000469439 AMELXQ99217 191 aa3.99□□□□□ -1.77
SYNE1-219ENST00000469439 Q9H8V8 135 aa3.99□□□□□ -1.77
SYNE1-219ENST00000469439 APLNQ9ULZ1 77 aa3.99□□□□□ -1.77
SYNE1-219ENST00000469439 H0Y8G0 127 aa3.98□□□□□ -1.77
SYNE1-219ENST00000469439 C3orf79P0CE67 100 aa3.98□□□□□ -1.77
SYNE1-219ENST00000469439 PCP4P48539 62 aa3.98□□□□□ -1.77
SYNE1-219ENST00000469439 REG3AQ06141 175 aa3.98□□□□□ -1.77
SYNE1-219ENST00000469439 C14orf177Q52M58 125 aa3.98□□□□□ -1.77
SYNE1-219ENST00000469439 FAM19A3Q7Z5A8 133 aa3.98□□□□□ -1.77
SYNE1-219ENST00000469439 COPS9Q8WXC6 57 aa3.98□□□□□ -1.77
SYNE1-219ENST00000469439 PLEKHB2Q96CS7 222 aa3.98□□□□□ -1.77
SYNE1-219ENST00000469439 PMCHL2Q9BQD1 86 aa3.98□□□□□ -1.77
SYNE1-219ENST00000469439 NBEAL1Q6ZS30 2694 aa3.98□□□□□ -1.77
SYNE1-219ENST00000469439 PKD1L1Q8TDX9 2849 aa3.98□□□□□ -1.77
SYNE1-219ENST00000469439 A0A096LNJ9 63 aa3.97□□□□□ -1.77
SYNE1-219ENST00000469439 TRAV13-1A0A0B4J241 112 aa3.97□□□□□ -1.77
SYNE1-219ENST00000469439 C11orf86A6NJI1 115 aa3.97□□□□□ -1.77
SYNE1-219ENST00000469439 IBA57-AS1B1ANH7 110 aa3.97□□□□□ -1.77
SYNE1-219ENST00000469439 COX7A2LO14548 114 aa3.97□□□□□ -1.77
SYNE1-219ENST00000469439 NUPR1O60356 82 aa3.97□□□□□ -1.77
SYNE1-219ENST00000469439 PRSS2P07478 247 aa3.97□□□□□ -1.77
SYNE1-219ENST00000469439 IGLC3P0DOY3 106 aa3.97□□□□□ -1.77
SYNE1-219ENST00000469439 CXCL5P42830 114 aa3.97□□□□□ -1.77
SYNE1-219ENST00000469439 NMUP48645 174 aa3.97□□□□□ -1.77
SYNE1-219ENST00000469439 TMEM170BQ5T4T1 132 aa3.97□□□□□ -1.77
SYNE1-219ENST00000469439 CD164L2Q6UWJ8 174 aa3.97□□□□□ -1.77
SYNE1-219ENST00000469439 LINC00469Q8N7U9 141 aa3.97□□□□□ -1.77
SYNE1-219ENST00000469439 VAMP8Q9BV40 100 aa3.97□□□□□ -1.77
SYNE1-219ENST00000469439 PRR34Q9NV39 138 aa3.97□□□□□ -1.77
SYNE1-219ENST00000469439 LINC00588Q9Y4M8 146 aa3.97□□□□□ -1.77
SYNE1-219ENST00000469439 IGLV5-39A0A0G2JS06 123 aa3.96□□□□□ -1.78
SYNE1-219ENST00000469439 LINC00959A0A1B0GUT2 108 aa3.96□□□□□ -1.78
SYNE1-219ENST00000469439 PSCAO43653 123 aa3.96□□□□□ -1.78
SYNE1-219ENST00000469439 UBE2D1P51668 147 aa3.96□□□□□ -1.78
SYNE1-219ENST00000469439 CIRBPQ14011 172 aaKnown RBP3.96□□□□□ -1.78
SYNE1-219ENST00000469439 MPV17L2Q567V2 206 aa3.96□□□□□ -1.78
SYNE1-219ENST00000469439 Q6ZUT4 128 aa3.96□□□□□ -1.78
SYNE1-219ENST00000469439 BOD1L2Q8IYS8 172 aa3.96□□□□□ -1.78
SYNE1-219ENST00000469439 LINC00269Q8N2A0 174 aa3.96□□□□□ -1.78
SYNE1-219ENST00000469439 UBE2WQ96B02 151 aa3.96□□□□□ -1.78
SYNE1-219ENST00000469439 CHAC1Q9BUX1 264 aa3.96□□□□□ -1.78
SYNE1-219ENST00000469439 Q9UF83 564 aa3.96□□□□□ -1.78
SYNE1-219ENST00000469439 KLK12Q9UKR0 248 aa3.96□□□□□ -1.78
SYNE1-219ENST00000469439 A0A087WZ39 114 aa3.95□□□□□ -1.78
SYNE1-219ENST00000469439 TSTD3H0UI37 97 aa3.95□□□□□ -1.78
SYNE1-219ENST00000469439 IGHV3-30P01768 117 aa3.95□□□□□ -1.78
SYNE1-219ENST00000469439 IGHV3-33P01772 117 aa3.95□□□□□ -1.78
SYNE1-219ENST00000469439 IGHV3-30-3P0DP02 117 aa3.95□□□□□ -1.78
SYNE1-219ENST00000469439 IGHV3-30-5P0DP03 117 aa3.95□□□□□ -1.78
SYNE1-219ENST00000469439 LGALS3P17931 250 aaKnown RBP3.95□□□□□ -1.78
SYNE1-219ENST00000469439 HERV-K104P63124 156 aa3.95□□□□□ -1.78
SYNE1-219ENST00000469439 CASC10Q5T4H9 136 aa3.95□□□□□ -1.78
SYNE1-219ENST00000469439 ZFAND6Q6FIF0 208 aa3.95□□□□□ -1.78
SYNE1-219ENST00000469439 Q8N976 141 aa3.95□□□□□ -1.78
SYNE1-219ENST00000469439 MRPL35Q9NZE8 188 aaKnown RBP3.95□□□□□ -1.78
SYNE1-219ENST00000469439 FBN3Q75N90 2809 aa3.94□□□□□ -1.78
SYNE1-219ENST00000469439 NBEAL2Q6ZNJ1 2754 aa3.94□□□□□ -1.78
SYNE1-219ENST00000469439 IGLV4-60A0A075B6I1 120 aa3.94□□□□□ -1.78
SYNE1-219ENST00000469439 IGLV5-45A0A087WSX0 123 aa3.94□□□□□ -1.78
SYNE1-219ENST00000469439 IGHV1-58A0A0C4DH39 117 aa3.94□□□□□ -1.78
SYNE1-219ENST00000469439 IGKV3OR2-268A0A0C4DH90 116 aa3.94□□□□□ -1.78
SYNE1-219ENST00000469439 MYMXA0A1B0GTQ4 84 aa3.94□□□□□ -1.78
SYNE1-219ENST00000469439 CKS1BP61024 79 aa3.94□□□□□ -1.78
SYNE1-219ENST00000469439 C6orf226Q5I0X4 101 aa3.94□□□□□ -1.78
SYNE1-219ENST00000469439 LINC00242Q5T6M2 205 aa3.94□□□□□ -1.78
SYNE1-219ENST00000469439 ZC2HC1BQ5TFG8 222 aa3.94□□□□□ -1.78
SYNE1-219ENST00000469439 WFDC10BQ8IUB3 73 aa3.94□□□□□ -1.78
SYNE1-219ENST00000469439 CHCHD10Q8WYQ3 142 aaPredicted RBP3.94□□□□□ -1.78
SYNE1-219ENST00000469439 IGKV2D-24A0A075B6R9 120 aa3.93□□□□□ -1.78
SYNE1-219ENST00000469439 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-219ENST00000469439 A0A0J9YXV3 536 aa3.93□□□□□ -1.78
SYNE1-219ENST00000469439 NBDYA0A0U1RRE5 68 aa3.93□□□□□ -1.78
SYNE1-219ENST00000469439 LOC105371267A0A1B0GV96 52 aa3.93□□□□□ -1.78
SYNE1-219ENST00000469439 E9PLD3 99 aa3.93□□□□□ -1.78
SYNE1-219ENST00000469439 LEPROTO15243 131 aa3.93□□□□□ -1.78
SYNE1-219ENST00000469439 LY6G6CO95867 125 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms