RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TOMM6Q96B49 74 aa7.76□□□□□ -1.17
SQSTM1-206ENST00000466342 AP5S1Q9NUS5 200 aa7.76□□□□□ -1.17
SQSTM1-206ENST00000466342 LINC01549A6NIU2 74 aa7.75□□□□□ -1.17
SQSTM1-206ENST00000466342 IGIPA6NJ69 53 aa7.75□□□□□ -1.17
SQSTM1-206ENST00000466342 C1orf196B1AJZ1 125 aa7.75□□□□□ -1.17
SQSTM1-206ENST00000466342 TRGC2P03986 189 aa7.75□□□□□ -1.17
SQSTM1-206ENST00000466342 NPSP0C0P6 89 aa7.75□□□□□ -1.17
SQSTM1-206ENST00000466342 XCL1P47992 114 aa7.75□□□□□ -1.17
SQSTM1-206ENST00000466342 FOXI1Q12951 378 aa7.75□□□□□ -1.17
SQSTM1-206ENST00000466342 URB1-AS1Q96HZ7 61 aa7.75□□□□□ -1.17
SQSTM1-206ENST00000466342 TRAV13-1A0A0B4J241 112 aa7.74□□□□□ -1.17
SQSTM1-206ENST00000466342 IFITM10A6NMD0 228 aa7.74□□□□□ -1.17
SQSTM1-206ENST00000466342 LINC00614P0C842 121 aa7.74□□□□□ -1.17
SQSTM1-206ENST00000466342 S100A1P23297 94 aa7.74□□□□□ -1.17
SQSTM1-206ENST00000466342 RAB5BP61020 215 aa7.74□□□□□ -1.17
SQSTM1-206ENST00000466342 CD164L2Q6UWJ8 174 aa7.74□□□□□ -1.17
SQSTM1-206ENST00000466342 Q6ZSA8 131 aa7.74□□□□□ -1.17
SQSTM1-206ENST00000466342 TMEM141Q96I45 108 aa7.74□□□□□ -1.17
SQSTM1-206ENST00000466342 TIMM17AQ99595 171 aa7.74□□□□□ -1.17
SQSTM1-206ENST00000466342 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.73□□□□□ -1.17
SQSTM1-206ENST00000466342 Q6ZN92 141 aa7.73□□□□□ -1.17
SQSTM1-206ENST00000466342 TEX43Q6ZNM6 134 aa7.73□□□□□ -1.17
SQSTM1-206ENST00000466342 PAPPA-AS1Q5QFB9 102 aa7.72□□□□□ -1.17
SQSTM1-206ENST00000466342 LINC00173Q6ZV60 143 aa7.72□□□□□ -1.17
SQSTM1-206ENST00000466342 ERASQ7Z444 233 aa7.72□□□□□ -1.17
SQSTM1-206ENST00000466342 SCGB3A1Q96QR1 104 aa7.72□□□□□ -1.17
SQSTM1-206ENST00000466342 AMELXQ99217 191 aa7.72□□□□□ -1.17
SQSTM1-206ENST00000466342 C2orf88Q9BSF0 95 aa7.72□□□□□ -1.17
SQSTM1-206ENST00000466342 A0A096LNJ9 63 aa7.71□□□□□ -1.18
SQSTM1-206ENST00000466342 PRSS1P07477 247 aa7.71□□□□□ -1.18
SQSTM1-206ENST00000466342 CFAP161Q6P656 301 aa7.71□□□□□ -1.18
SQSTM1-206ENST00000466342 C15orf56Q8N910 161 aa7.71□□□□□ -1.18
SQSTM1-206ENST00000466342 CHCHD1Q96BP2 118 aaKnown RBP7.71□□□□□ -1.18
SQSTM1-206ENST00000466342 KRTAP9-2Q9BYQ4 174 aa7.71□□□□□ -1.18
SQSTM1-206ENST00000466342 VCX2Q9H322 139 aa7.71□□□□□ -1.18
SQSTM1-206ENST00000466342 TNXBP22105 4242 aa7.7□□□□□ -1.18
SQSTM1-206ENST00000466342 hDV102S1A0JD36 115 aa7.7□□□□□ -1.18
SQSTM1-206ENST00000466342 HBDP02042 147 aa7.7□□□□□ -1.18
SQSTM1-206ENST00000466342 UBE2D1P51668 147 aa7.7□□□□□ -1.18
SQSTM1-206ENST00000466342 ZC2HC1BQ5TFG8 222 aa7.7□□□□□ -1.18
SQSTM1-206ENST00000466342 GVQW2A0A096LPI5 108 aaPredicted RBP7.69□□□□□ -1.18
SQSTM1-206ENST00000466342 IGHV1-58A0A0C4DH39 117 aa7.69□□□□□ -1.18
SQSTM1-206ENST00000466342 COX7A2LO14548 114 aa7.69□□□□□ -1.18
SQSTM1-206ENST00000466342 PMCHL1Q16048 86 aa7.69□□□□□ -1.18
SQSTM1-206ENST00000466342 LINC00242Q5T6M2 205 aa7.69□□□□□ -1.18
SQSTM1-206ENST00000466342 IGHV3OR16-9A0A0B4J2B5 98 aa7.68□□□□□ -1.18
SQSTM1-206ENST00000466342 PDZD11Q5EBL8 140 aa7.68□□□□□ -1.18
SQSTM1-206ENST00000466342 SCXQ7RTU7 201 aa7.68□□□□□ -1.18
SQSTM1-206ENST00000466342 C5orf38Q86SI9 138 aa7.68□□□□□ -1.18
SQSTM1-206ENST00000466342 BAGE3Q86Y29 109 aa7.68□□□□□ -1.18
SQSTM1-206ENST00000466342 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.67□□□□□ -1.18
SQSTM1-206ENST00000466342 MT1HL1P0DM35 61 aa7.67□□□□□ -1.18
SQSTM1-206ENST00000466342 MALP21145 153 aa7.67□□□□□ -1.18
SQSTM1-206ENST00000466342 LINC01620Q4KN68 170 aa7.67□□□□□ -1.18
SQSTM1-206ENST00000466342 HIGD2BQ4VC39 106 aa7.67□□□□□ -1.18
SQSTM1-206ENST00000466342 FAM19A3Q7Z5A8 133 aa7.67□□□□□ -1.18
SQSTM1-206ENST00000466342 HSBP1O75506 76 aa7.66□□□□□ -1.18
SQSTM1-206ENST00000466342 ATP5LO75964 103 aa7.66□□□□□ -1.18
SQSTM1-206ENST00000466342 APOMO95445 188 aa7.66□□□□□ -1.18
SQSTM1-206ENST00000466342 CNBPP62633 177 aaKnown RBP7.66□□□□□ -1.18
SQSTM1-206ENST00000466342 SEC11AP67812 179 aa7.66□□□□□ -1.18
SQSTM1-206ENST00000466342 COX6A2Q02221 97 aa7.66□□□□□ -1.18
SQSTM1-206ENST00000466342 PMVKQ15126 192 aa7.66□□□□□ -1.18
SQSTM1-206ENST00000466342 CHAC1Q9BUX1 264 aa7.66□□□□□ -1.18
SQSTM1-206ENST00000466342 A0A087WZ39 114 aa7.65□□□□□ -1.18
SQSTM1-206ENST00000466342 SERF1AO75920 110 aa7.65□□□□□ -1.18
SQSTM1-206ENST00000466342 SLPIP03973 132 aa7.65□□□□□ -1.18
SQSTM1-206ENST00000466342 LINC00310P59036 64 aa7.65□□□□□ -1.18
SQSTM1-206ENST00000466342 HERVK_113P63121 156 aa7.65□□□□□ -1.18
SQSTM1-206ENST00000466342 C9orf163Q8N9P6 203 aa7.65□□□□□ -1.18
SQSTM1-206ENST00000466342 CST9LQ9H4G1 147 aa7.65□□□□□ -1.18
SQSTM1-206ENST00000466342 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.64□□□□□ -1.19
SQSTM1-206ENST00000466342 ZNF561-AS1K7EIQ3 104 aa7.64□□□□□ -1.19
SQSTM1-206ENST00000466342 HIST1H2BKO60814 126 aa7.64□□□□□ -1.19
SQSTM1-206ENST00000466342 HIST1H2BJP06899 126 aa7.64□□□□□ -1.19
SQSTM1-206ENST00000466342 HIST1H2BOP23527 126 aa7.64□□□□□ -1.19
SQSTM1-206ENST00000466342 HIST1H2BBP33778 126 aa7.64□□□□□ -1.19
SQSTM1-206ENST00000466342 HIST1H2BDP58876 126 aa7.64□□□□□ -1.19
SQSTM1-206ENST00000466342 HIST1H2BCP62807 126 aa7.64□□□□□ -1.19
SQSTM1-206ENST00000466342 HIST2H2BEQ16778 126 aa7.64□□□□□ -1.19
SQSTM1-206ENST00000466342 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.64□□□□□ -1.19
SQSTM1-206ENST00000466342 FAM19A2Q8N3H0 131 aa7.64□□□□□ -1.19
SQSTM1-206ENST00000466342 HIST1H2BHQ93079 126 aa7.64□□□□□ -1.19
SQSTM1-206ENST00000466342 HIST1H2BNQ99877 126 aa7.64□□□□□ -1.19
SQSTM1-206ENST00000466342 HIST1H2BMQ99879 126 aa7.64□□□□□ -1.19
SQSTM1-206ENST00000466342 IGHV3-64A0A075B6Q5 118 aa7.63□□□□□ -1.19
SQSTM1-206ENST00000466342 A0A0J9YXV3 536 aa7.63□□□□□ -1.19
SQSTM1-206ENST00000466342 KRTAP9-6A0A140TA67 174 aa7.63□□□□□ -1.19
SQSTM1-206ENST00000466342 LINC01561Q8N1V8 128 aa7.63□□□□□ -1.19
SQSTM1-206ENST00000466342 OR10D4PQ8NGN7 298 aa7.63□□□□□ -1.19
SQSTM1-206ENST00000466342 LINC00526Q96FQ7 95 aa7.63□□□□□ -1.19
SQSTM1-206ENST00000466342 GEMIN7Q9H840 131 aaKnown RBP7.63□□□□□ -1.19
SQSTM1-206ENST00000466342 TINCRA0A1B0GVN0 87 aa7.62□□□□□ -1.19
SQSTM1-206ENST00000466342 NUPR1O60356 82 aa7.62□□□□□ -1.19
SQSTM1-206ENST00000466342 NDUFA6P56556 154 aa7.62□□□□□ -1.19
SQSTM1-206ENST00000466342 SPAG11BQ08648 103 aa7.62□□□□□ -1.19
SQSTM1-206ENST00000466342 CIRBP-AS1Q8TBR5 109 aa7.62□□□□□ -1.19
SQSTM1-206ENST00000466342 ORAOV1Q8WV07 137 aa7.62□□□□□ -1.19
SQSTM1-206ENST00000466342 IFI27L1Q96BM0 104 aa7.62□□□□□ -1.19
SQSTM1-206ENST00000466342 IGLV4-69A0A075B6H9 119 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 112.4 ms