RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 TMEM238LA0A1B0GVL6 79 aa12.79□□□□□ -0.36
COL9A3-205ENST00000466192 A6NJY4 79 aa12.79□□□□□ -0.36
COL9A3-205ENST00000466192 H3BMG7 143 aa12.79□□□□□ -0.36
COL9A3-205ENST00000466192 IGHV3-30P01768 117 aa12.79□□□□□ -0.36
COL9A3-205ENST00000466192 IGHV3-30-5P0DP03 117 aa12.79□□□□□ -0.36
COL9A3-205ENST00000466192 GYPEP15421 78 aa12.79□□□□□ -0.36
COL9A3-205ENST00000466192 TIRAPP58753 221 aa12.79□□□□□ -0.36
COL9A3-205ENST00000466192 ETDBQ3ZM63 59 aa12.79□□□□□ -0.36
COL9A3-205ENST00000466192 LINC00242Q5T6M2 205 aa12.79□□□□□ -0.36
COL9A3-205ENST00000466192 PRO0255Q9UI72 69 aa12.79□□□□□ -0.36
COL9A3-205ENST00000466192 TRBV6-8A0A0A6YYG3 113 aa12.77□□□□□ -0.36
COL9A3-205ENST00000466192 SH2D6Q7Z4S9 175 aa12.77□□□□□ -0.36
COL9A3-205ENST00000466192 TMEM101Q96IK0 257 aa12.77□□□□□ -0.36
COL9A3-205ENST00000466192 PRO0461Q9UI25 63 aa12.77□□□□□ -0.36
COL9A3-205ENST00000466192 IGLV5-45A0A087WSX0 123 aa12.77□□□□□ -0.37
COL9A3-205ENST00000466192 DAD1P61803 113 aa12.77□□□□□ -0.37
COL9A3-205ENST00000466192 A0A0J9YXY3 114 aa12.76□□□□□ -0.37
COL9A3-205ENST00000466192 HERVK_113P63121 156 aa12.76□□□□□ -0.37
COL9A3-205ENST00000466192 GAGE6Q13070 117 aa12.76□□□□□ -0.37
COL9A3-205ENST00000466192 NDUFA12Q9UI09 145 aa12.76□□□□□ -0.37
COL9A3-205ENST00000466192 APOMO95445 188 aa12.75□□□□□ -0.37
COL9A3-205ENST00000466192 CKS1BP61024 79 aa12.75□□□□□ -0.37
COL9A3-205ENST00000466192 H7C423 109 aa12.74□□□□□ -0.37
COL9A3-205ENST00000466192 ATP6V0E2Q8NHE4 81 aa12.74□□□□□ -0.37
COL9A3-205ENST00000466192 PAX4O43316 350 aa12.74□□□□□ -0.37
COL9A3-205ENST00000466192 CHCHD5Q9BSY4 110 aa12.74□□□□□ -0.37
COL9A3-205ENST00000466192 SPART-AS1P0CW21 52 aa12.73□□□□□ -0.37
COL9A3-205ENST00000466192 FAM19A3Q7Z5A8 133 aa12.73□□□□□ -0.37
COL9A3-205ENST00000466192 NOTCH1P46531 2555 aa12.73□□□□□ -0.37
COL9A3-205ENST00000466192 RETNQ9HD89 108 aa12.73□□□□□ -0.37
COL9A3-205ENST00000466192 PGPEP1Q9NXJ5 209 aa12.72□□□□□ -0.37
COL9A3-205ENST00000466192 IGLV4-60A0A075B6I1 120 aa12.71□□□□□ -0.37
COL9A3-205ENST00000466192 ATP5G1P05496 136 aa12.71□□□□□ -0.37
COL9A3-205ENST00000466192 ZFAND6Q6FIF0 208 aa12.71□□□□□ -0.37
COL9A3-205ENST00000466192 A0A096LPF7 62 aa12.71□□□□□ -0.37
COL9A3-205ENST00000466192 IGKV3OR2-268A0A0C4DH90 116 aa12.7□□□□□ -0.38
COL9A3-205ENST00000466192 CFC1BP0CG36 223 aa12.7□□□□□ -0.38
COL9A3-205ENST00000466192 CFC1P0CG37 223 aa12.7□□□□□ -0.38
COL9A3-205ENST00000466192 MUSTN1Q8IVN3 82 aa12.7□□□□□ -0.38
COL9A3-205ENST00000466192 LITAFQ99732 161 aa12.7□□□□□ -0.38
COL9A3-205ENST00000466192 A4D1N5 150 aa12.69□□□□□ -0.38
COL9A3-205ENST00000466192 SMIM1B2RUZ4 78 aa12.69□□□□□ -0.38
COL9A3-205ENST00000466192 TRAV26-1A0A087WT03 109 aa12.69□□□□□ -0.38
COL9A3-205ENST00000466192 IGLV5-39A0A0G2JS06 123 aa12.69□□□□□ -0.38
COL9A3-205ENST00000466192 ADAMTSL4-AS1Q5T5F5 129 aa12.69□□□□□ -0.38
COL9A3-205ENST00000466192 F5H768 121 aa12.68□□□□□ -0.38
COL9A3-205ENST00000466192 FOXI1Q12951 378 aa12.68□□□□□ -0.38
COL9A3-205ENST00000466192 MTURNQ8N3F0 131 aa12.68□□□□□ -0.38
COL9A3-205ENST00000466192 TENM3Q9P273 2699 aa12.68□□□□□ -0.38
COL9A3-205ENST00000466192 NBEAL1Q6ZS30 2694 aa12.67□□□□□ -0.38
COL9A3-205ENST00000466192 PRSS2P07478 247 aa12.67□□□□□ -0.38
COL9A3-205ENST00000466192 TSPAN13O95857 204 aa12.67□□□□□ -0.38
COL9A3-205ENST00000466192 HTN3P15516 51 aa12.67□□□□□ -0.38
COL9A3-205ENST00000466192 SFTA2Q6UW10 78 aa12.67□□□□□ -0.38
COL9A3-205ENST00000466192 NDUFA1O15239 70 aa12.66□□□□□ -0.38
COL9A3-205ENST00000466192 TMEM262E9PQX1 116 aa12.66□□□□□ -0.38
COL9A3-205ENST00000466192 Q9H8V8 135 aa12.66□□□□□ -0.38
COL9A3-205ENST00000466192 CDIP1Q9H305 208 aa12.65□□□□□ -0.38
COL9A3-205ENST00000466192 EIF4EBP3O60516 100 aaPredicted RBP12.64□□□□□ -0.39
COL9A3-205ENST00000466192 NPC2P61916 151 aa12.64□□□□□ -0.39
COL9A3-205ENST00000466192 ZNF625Q96I27 306 aaPredicted RBP12.64□□□□□ -0.39
COL9A3-205ENST00000466192 SPANXDQ9BXN6 97 aa12.64□□□□□ -0.39
COL9A3-205ENST00000466192 SPANXCQ9NY87 97 aa12.64□□□□□ -0.39
COL9A3-205ENST00000466192 PRO1854Q9UHT4 67 aa12.64□□□□□ -0.39
COL9A3-205ENST00000466192 SMCPP49901 116 aaPredicted RBP12.63□□□□□ -0.39
COL9A3-205ENST00000466192 DAND5Q8N907 189 aa12.63□□□□□ -0.39
COL9A3-205ENST00000466192 LOC107984156A0A0G2JMH3 177 aa12.62□□□□□ -0.39
COL9A3-205ENST00000466192 MIAQ16674 131 aa12.62□□□□□ -0.39
COL9A3-205ENST00000466192 ARL17AQ8IVW1 177 aa12.62□□□□□ -0.39
COL9A3-205ENST00000466192 LYRM7Q5U5X0 104 aa12.62□□□□□ -0.39
COL9A3-205ENST00000466192 A0A1B0GUV1 79 aa12.6□□□□□ -0.39
COL9A3-205ENST00000466192 PRB2P02812 416 aaPredicted RBP12.6□□□□□ -0.39
COL9A3-205ENST00000466192 TIMM17BO60830 172 aa12.6□□□□□ -0.39
COL9A3-205ENST00000466192 MRPL23Q16540 153 aaKnown RBP12.6□□□□□ -0.39
COL9A3-205ENST00000466192 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.59□□□□□ -0.39
COL9A3-205ENST00000466192 A0A0B4J2C4 111 aa12.59□□□□□ -0.39
COL9A3-205ENST00000466192 A0A0U1RRA0 63 aa12.59□□□□□ -0.39
COL9A3-205ENST00000466192 CIRBPQ14011 172 aaKnown RBP12.59□□□□□ -0.39
COL9A3-205ENST00000466192 C11orf68Q9H3H3 251 aaKnown RBP12.59□□□□□ -0.39
COL9A3-205ENST00000466192 IGHV3OR16-9A0A0B4J2B5 98 aa12.59□□□□□ -0.39
COL9A3-205ENST00000466192 LINC00959A0A1B0GUT2 108 aa12.59□□□□□ -0.39
COL9A3-205ENST00000466192 H7C2G1 150 aa12.59□□□□□ -0.39
COL9A3-205ENST00000466192 CLPSL2Q6UWE3 100 aa12.58□□□□□ -0.4
COL9A3-205ENST00000466192 ICOSQ9Y6W8 199 aa12.58□□□□□ -0.4
COL9A3-205ENST00000466192 MT-ATP8P03928 68 aa12.57□□□□□ -0.4
COL9A3-205ENST00000466192 IGHV3-33P01772 117 aa12.57□□□□□ -0.4
COL9A3-205ENST00000466192 TOMM7Q9P0U1 55 aa12.57□□□□□ -0.4
COL9A3-205ENST00000466192 C5orf38Q86SI9 138 aa12.56□□□□□ -0.4
COL9A3-205ENST00000466192 Q8N3U1 123 aa12.56□□□□□ -0.4
COL9A3-205ENST00000466192 PPDPFLQ8WWR9 84 aa12.56□□□□□ -0.4
COL9A3-205ENST00000466192 MGAM2Q2M2H8 2515 aa12.56□□□□□ -0.4
COL9A3-205ENST00000466192 A0A0J9YWU9 116 aa12.56□□□□□ -0.4
COL9A3-205ENST00000466192 XGP55808 180 aa12.56□□□□□ -0.4
COL9A3-205ENST00000466192 MEIG1Q5JSS6 88 aa12.56□□□□□ -0.4
COL9A3-205ENST00000466192 Q6ZTC4 211 aa12.56□□□□□ -0.4
COL9A3-205ENST00000466192 ERG28Q9UKR5 140 aa12.56□□□□□ -0.4
COL9A3-205ENST00000466192 PSMB2P49721 201 aa12.55□□□□□ -0.4
COL9A3-205ENST00000466192 TEN1Q86WV5 123 aa12.55□□□□□ -0.4
COL9A3-205ENST00000466192 COX7B2Q8TF08 81 aa12.55□□□□□ -0.4
COL9A3-205ENST00000466192 XCL1P47992 114 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms