RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 C10orf99Q6UWK7 81 aa5.68□□□□□ -1.5
USP54-210ENST00000466048 ITPR1Q14643 2758 aa5.68□□□□□ -1.5
USP54-210ENST00000466048 LINC00310P59036 64 aa5.68□□□□□ -1.5
USP54-210ENST00000466048 DCHS1Q96JQ0 3298 aa5.67□□□□□ -1.5
USP54-210ENST00000466048 TRBV7-3A0A075B6L6 115 aa5.67□□□□□ -1.5
USP54-210ENST00000466048 IGHV4-4A0A075B6R2 117 aa5.67□□□□□ -1.5
USP54-210ENST00000466048 LINC00694P0DN24 101 aa5.67□□□□□ -1.5
USP54-210ENST00000466048 IGKV2D-26A0A0A0MRZ7 120 aa5.67□□□□□ -1.5
USP54-210ENST00000466048 C11orf45Q8TAV5 145 aa5.67□□□□□ -1.5
USP54-210ENST00000466048 Q6JHZ5 121 aa5.67□□□□□ -1.5
USP54-210ENST00000466048 LST1O00453 97 aa5.66□□□□□ -1.5
USP54-210ENST00000466048 IGLV1-51P01701 117 aa5.66□□□□□ -1.5
USP54-210ENST00000466048 NKAPP1Q8N9T2 125 aa5.66□□□□□ -1.5
USP54-210ENST00000466048 NOP10Q9NPE3 64 aaKnown RBP5.66□□□□□ -1.5
USP54-210ENST00000466048 TRAV23DV6A0A075B6W5 121 aa5.66□□□□□ -1.5
USP54-210ENST00000466048 ZNF561-AS1K7EIQ3 104 aa5.66□□□□□ -1.5
USP54-210ENST00000466048 NXPH4O95158 308 aa5.66□□□□□ -1.5
USP54-210ENST00000466048 FAM222AQ5U5X8 452 aa5.66□□□□□ -1.5
USP54-210ENST00000466048 LINC00482Q8N8I6 264 aa5.66□□□□□ -1.5
USP54-210ENST00000466048 ZFAND2AQ8N6M9 145 aa5.66□□□□□ -1.5
USP54-210ENST00000466048 COX7B2Q8TF08 81 aa5.66□□□□□ -1.5
USP54-210ENST00000466048 DCANP1Q8TF63 244 aa5.66□□□□□ -1.5
USP54-210ENST00000466048 HRNRQ86YZ3 2850 aaPredicted RBP5.66□□□□□ -1.5
USP54-210ENST00000466048 GNRH2O43555 120 aa5.66□□□□□ -1.5
USP54-210ENST00000466048 TRIAP1O43715 76 aa5.66□□□□□ -1.5
USP54-210ENST00000466048 MAPKAPK5-AS1Q8N8E1 139 aa5.66□□□□□ -1.5
USP54-210ENST00000466048 SPATA3Q8NHX4 192 aa5.66□□□□□ -1.5
USP54-210ENST00000466048 FAM19A4Q96LR4 140 aa5.66□□□□□ -1.5
USP54-210ENST00000466048 ASPMQ8IZT6 3477 aa5.66□□□□□ -1.5
USP54-210ENST00000466048 IGHV3-16A0A0C4DH30 117 aa5.65□□□□□ -1.5
USP54-210ENST00000466048 PRB2P02812 416 aaPredicted RBP5.65□□□□□ -1.5
USP54-210ENST00000466048 SPENQ96T58 3664 aaKnown RBP5.65□□□□□ -1.5
USP54-210ENST00000466048 CR1P17927 2039 aa5.65□□□□□ -1.5
USP54-210ENST00000466048 CSDC2Q9Y534 153 aaKnown RBP5.65□□□□□ -1.5
USP54-210ENST00000466048 TRBV10-1A0A0K0K1A3 114 aa5.65□□□□□ -1.51
USP54-210ENST00000466048 SDIM1Q6ZPB5 146 aa5.65□□□□□ -1.51
USP54-210ENST00000466048 C14orf132Q9NPU4 83 aa5.65□□□□□ -1.51
USP54-210ENST00000466048 TRAV10A0A0B4J240 114 aa5.65□□□□□ -1.51
USP54-210ENST00000466048 KLLNB2CW77 178 aa5.65□□□□□ -1.51
USP54-210ENST00000466048 IGHV3-30P01768 117 aa5.65□□□□□ -1.51
USP54-210ENST00000466048 IGHV3-30-5P0DP03 117 aa5.65□□□□□ -1.51
USP54-210ENST00000466048 RPS28P62857 69 aaKnown RBP5.65□□□□□ -1.51
USP54-210ENST00000466048 FAM19A5Q7Z5A7 132 aaPredicted RBP5.65□□□□□ -1.51
USP54-210ENST00000466048 PRO0255Q9UI72 69 aa5.65□□□□□ -1.51
USP54-210ENST00000466048 A0A0U1RQV1 116 aa5.64□□□□□ -1.51
USP54-210ENST00000466048 RPL39P62891 51 aaKnown RBP5.64□□□□□ -1.51
USP54-210ENST00000466048 HIGD2BQ4VC39 106 aa5.64□□□□□ -1.51
USP54-210ENST00000466048 DEFB4AO15263 64 aa5.64□□□□□ -1.51
USP54-210ENST00000466048 ADGRG4Q8IZF6 3080 aa5.64□□□□□ -1.51
USP54-210ENST00000466048 NACAE9PAV3 2078 aa5.64□□□□□ -1.51
USP54-210ENST00000466048 TMEM223A0PJW6 202 aa5.63□□□□□ -1.51
USP54-210ENST00000466048 ESM1Q9NQ30 184 aa5.63□□□□□ -1.51
USP54-210ENST00000466048 A0A096LPF7 62 aa5.63□□□□□ -1.51
USP54-210ENST00000466048 IGHV3-38A0A0C4DH36 116 aa5.63□□□□□ -1.51
USP54-210ENST00000466048 UBE2D1P51668 147 aa5.63□□□□□ -1.51
USP54-210ENST00000466048 UBE2D3P61077 147 aa5.63□□□□□ -1.51
USP54-210ENST00000466048 UBE2D2P62837 147 aa5.63□□□□□ -1.51
USP54-210ENST00000466048 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.63□□□□□ -1.51
USP54-210ENST00000466048 IGKV2-29A2NJV5 120 aaPredicted RBP5.63□□□□□ -1.51
USP54-210ENST00000466048 NDUFB1O75438 58 aa5.63□□□□□ -1.51
USP54-210ENST00000466048 KRTAP24-1Q3LI83 254 aa5.63□□□□□ -1.51
USP54-210ENST00000466048 HRCT1Q6UXD1 115 aa5.63□□□□□ -1.51
USP54-210ENST00000466048 PRO0628Q9UI54 55 aa5.63□□□□□ -1.51
USP54-210ENST00000466048 NFE4Q86UQ8 179 aa5.63□□□□□ -1.51
USP54-210ENST00000466048 RNASE13Q5GAN3 156 aaKnown RBP5.62□□□□□ -1.51
USP54-210ENST00000466048 LAMA5O15230 3695 aa5.62□□□□□ -1.51
USP54-210ENST00000466048 K7EQD1 137 aa5.62□□□□□ -1.51
USP54-210ENST00000466048 ZNF22P17026 224 aaPredicted RBP5.62□□□□□ -1.51
USP54-210ENST00000466048 C18orf65Q6ZTR6 163 aa5.62□□□□□ -1.51
USP54-210ENST00000466048 C11orf21Q9P2W6 132 aa5.62□□□□□ -1.51
USP54-210ENST00000466048 RNF185Q96GF1 192 aa5.62□□□□□ -1.51
USP54-210ENST00000466048 SORL1Q92673 2214 aa5.62□□□□□ -1.51
USP54-210ENST00000466048 TRAV7A0A075B6U4 112 aa5.61□□□□□ -1.51
USP54-210ENST00000466048 NUPR2A6NF83 97 aa5.61□□□□□ -1.51
USP54-210ENST00000466048 PIK3CD-AS1Q5SR53 167 aa5.61□□□□□ -1.51
USP54-210ENST00000466048 MIR7-3HGQ8N6C7 128 aa5.61□□□□□ -1.51
USP54-210ENST00000466048 MPLKIPQ8TAP9 179 aa5.61□□□□□ -1.51
USP54-210ENST00000466048 NDUFA1O15239 70 aa5.61□□□□□ -1.51
USP54-210ENST00000466048 UBE2BP63146 152 aa5.61□□□□□ -1.51
USP54-210ENST00000466048 TIRAPP58753 221 aa5.61□□□□□ -1.51
USP54-210ENST00000466048 C14orf177Q52M58 125 aa5.61□□□□□ -1.51
USP54-210ENST00000466048 PRR9Q5T870 116 aa5.61□□□□□ -1.51
USP54-210ENST00000466048 HHLA3Q9XRX5 114 aa5.61□□□□□ -1.51
USP54-210ENST00000466048 PYGO1Q9Y3Y4 419 aa5.61□□□□□ -1.51
USP54-210ENST00000466048 TRBV7-7A0A0K0K1E9 115 aa5.6□□□□□ -1.51
USP54-210ENST00000466048 LINC01546A6NGU7 62 aa5.6□□□□□ -1.51
USP54-210ENST00000466048 BPY2O14599 106 aa5.6□□□□□ -1.51
USP54-210ENST00000466048 GYPEP15421 78 aa5.6□□□□□ -1.51
USP54-210ENST00000466048 LINC00308Q8TCZ7 52 aa5.6□□□□□ -1.51
USP54-210ENST00000466048 DIRC1Q969H9 104 aa5.6□□□□□ -1.51
USP54-210ENST00000466048 TRBV6-5A0A0K0K1A5 114 aa5.6□□□□□ -1.51
USP54-210ENST00000466048 SPTSSBQ8NFR3 76 aa5.6□□□□□ -1.51
USP54-210ENST00000466048 IGHV4-30-4P0DP06 118 aa5.6□□□□□ -1.51
USP54-210ENST00000466048 URB1-AS1Q96HZ7 61 aa5.6□□□□□ -1.51
USP54-210ENST00000466048 Q9HAA7 133 aa5.6□□□□□ -1.51
USP54-210ENST00000466048 UBR5O95071 2799 aaPredicted RBP5.59□□□□□ -1.51
USP54-210ENST00000466048 DEFB131BA0A096LNP1 70 aa5.59□□□□□ -1.51
USP54-210ENST00000466048 H7C423 109 aa5.59□□□□□ -1.51
USP54-210ENST00000466048 ENHOQ6UWT2 76 aa5.59□□□□□ -1.51
USP54-210ENST00000466048 CFAP46Q8IYW2 2715 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms