RNA–Protein interactions for RNA: ENST00000465563.5

SMC4-205, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 747 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-205ENST00000465563 TRBV6-1A0A0K0K1D8 114 aa-0.53□□□□□ -2.49
SMC4-205ENST00000465563 DCDP81605 110 aaKnown RBP-0.53□□□□□ -2.49
SMC4-205ENST00000465563 FAT1Q14517 4588 aa-0.53□□□□□ -2.49
SMC4-205ENST00000465563 KDM5AP29375 1690 aaKnown RBP-0.53□□□□□ -2.49
SMC4-205ENST00000465563 EP300Q09472 2414 aaPredicted RBP-0.54□□□□□ -2.5
SMC4-205ENST00000465563 SMG6Q86US8 1419 aaKnown RBP-0.54□□□□□ -2.5
SMC4-205ENST00000465563 NSD3Q9BZ95 1437 aa-0.54□□□□□ -2.5
SMC4-205ENST00000465563 APOC3P02656 99 aa-0.54□□□□□ -2.5
SMC4-205ENST00000465563 MT4P47944 62 aa-0.54□□□□□ -2.5
SMC4-205ENST00000465563 SPRR4Q96PI1 79 aa-0.54□□□□□ -2.5
SMC4-205ENST00000465563 MAP1AP78559 2803 aaPredicted RBP-0.55□□□□□ -2.5
SMC4-205ENST00000465563 ROCK2O75116 1388 aaKnown RBP-0.55□□□□□ -2.5
SMC4-205ENST00000465563 LOC285095A0A1B0GVY8 99 aa-0.55□□□□□ -2.5
SMC4-205ENST00000465563 SFT2D2O95562 160 aa-0.55□□□□□ -2.5
SMC4-205ENST00000465563 TNFP01375 233 aa-0.55□□□□□ -2.5
SMC4-205ENST00000465563 IFNGP01579 166 aa-0.55□□□□□ -2.5
SMC4-205ENST00000465563 AKAIN1P0CW23 69 aa-0.55□□□□□ -2.5
SMC4-205ENST00000465563 PIGYQ3MUY2 71 aa-0.55□□□□□ -2.5
SMC4-205ENST00000465563 DEFB123Q8N688 67 aa-0.55□□□□□ -2.5
SMC4-205ENST00000465563 CDC42SE2Q9NRR3 84 aa-0.55□□□□□ -2.5
SMC4-205ENST00000465563 SHANK2Q9UPX8 1470 aa-0.55□□□□□ -2.5
SMC4-205ENST00000465563 MRPL54Q6P161 138 aaKnown RBP-0.56□□□□□ -2.5
SMC4-205ENST00000465563 MYOZ3Q8TDC0 251 aa-0.56□□□□□ -2.5
SMC4-205ENST00000465563 HMGXB3Q12766 1538 aa-0.56□□□□□ -2.5
SMC4-205ENST00000465563 ZFHX3Q15911 3703 aa-0.56□□□□□ -2.5
SMC4-205ENST00000465563 COL6A3P12111 3177 aa-0.56□□□□□ -2.5
SMC4-205ENST00000465563 FLNBO75369 2602 aaKnown RBP-0.56□□□□□ -2.5
SMC4-205ENST00000465563 ACANP16112 2415 aa-0.57□□□□□ -2.5
SMC4-205ENST00000465563 TULP4Q9NRJ4 1543 aa-0.57□□□□□ -2.5
SMC4-205ENST00000465563 LAMA5O15230 3695 aa-0.57□□□□□ -2.5
SMC4-205ENST00000465563 STAB2Q8WWQ8 2551 aa-0.57□□□□□ -2.5
SMC4-205ENST00000465563 KTN1Q86UP2 1357 aaKnown RBP-0.57□□□□□ -2.5
SMC4-205ENST00000465563 PCLOQ9Y6V0 5065 aa-0.58□□□□□ -2.5
SMC4-205ENST00000465563 NEBP20929 6669 aa-0.58□□□□□ -2.5
SMC4-205ENST00000465563 DPH3P1Q9H4G8 78 aa-0.58□□□□□ -2.5
SMC4-205ENST00000465563 HERC2O95714 4834 aa-0.58□□□□□ -2.5
SMC4-205ENST00000465563 ARHGEF12Q9NZN5 1544 aa-0.59□□□□□ -2.5
SMC4-205ENST00000465563 MYOM2P54296 1465 aa-0.59□□□□□ -2.5
SMC4-205ENST00000465563 FXYD6-FXYD2A0A087WZ82 144 aa-0.59□□□□□ -2.5
SMC4-205ENST00000465563 CHKB-CPT1BH3BT56 60 aa-0.59□□□□□ -2.5
SMC4-205ENST00000465563 SPRR1BP22528 89 aa-0.59□□□□□ -2.5
SMC4-205ENST00000465563 C9orf153Q5TBE3 101 aa-0.59□□□□□ -2.5
SMC4-205ENST00000465563 RPL13AP3Q6NVV1 102 aa-0.59□□□□□ -2.5
SMC4-205ENST00000465563 TMEM263Q8WUH6 116 aaKnown RBP-0.59□□□□□ -2.5
SMC4-205ENST00000465563 LRP1BQ9NZR2 4599 aa-0.59□□□□□ -2.5
SMC4-205ENST00000465563 SCN7AQ01118 1682 aa-0.59□□□□□ -2.5
SMC4-205ENST00000465563 WDR7Q9Y4E6 1490 aa-0.6□□□□□ -2.5
SMC4-205ENST00000465563 UBE2L5PA0A1B0GUS4 154 aa-0.6□□□□□ -2.51
SMC4-205ENST00000465563 K7EQZ3 153 aa-0.6□□□□□ -2.51
SMC4-205ENST00000465563 IGLC1P0CG04 106 aa-0.6□□□□□ -2.51
SMC4-205ENST00000465563 COX6B1P14854 86 aa-0.6□□□□□ -2.51
SMC4-205ENST00000465563 UBE2L3P68036 154 aaKnown RBP-0.6□□□□□ -2.51
SMC4-205ENST00000465563 NXT2Q9NPJ8 142 aaKnown RBP-0.6□□□□□ -2.51
SMC4-205ENST00000465563 HIVEP1P15822 2718 aa-0.61□□□□□ -2.51
SMC4-205ENST00000465563 A0A1B0GV90 55 aa-0.61□□□□□ -2.51
SMC4-205ENST00000465563 EFCAB10A6NFE3 127 aa-0.61□□□□□ -2.51
SMC4-205ENST00000465563 DLEU1O43261 78 aa-0.61□□□□□ -2.51
SMC4-205ENST00000465563 MGPP08493 103 aa-0.61□□□□□ -2.51
SMC4-205ENST00000465563 SPRR2BP35325 72 aa-0.61□□□□□ -2.51
SMC4-205ENST00000465563 FAM167A-AS1Q96KT0 104 aa-0.61□□□□□ -2.51
SMC4-205ENST00000465563 DOPEY1Q5JWR5 2465 aa-0.61□□□□□ -2.51
SMC4-205ENST00000465563 GAPVD1Q14C86 1478 aa-0.61□□□□□ -2.51
SMC4-205ENST00000465563 EHBP1L1Q8N3D4 1523 aa-0.62□□□□□ -2.51
SMC4-205ENST00000465563 C10orf113Q5VZT2 155 aa-0.62□□□□□ -2.51
SMC4-205ENST00000465563 IER3IP1Q9Y5U9 82 aa-0.62□□□□□ -2.51
SMC4-205ENST00000465563 TGP01266 2768 aa-0.62□□□□□ -2.51
SMC4-205ENST00000465563 PRKDCP78527 4128 aaKnown RBP-0.62□□□□□ -2.51
SMC4-205ENST00000465563 MAGI1Q96QZ7 1491 aaPredicted RBP-0.62□□□□□ -2.51
SMC4-205ENST00000465563 MXRA5Q9NR99 2828 aa-0.62□□□□□ -2.51
SMC4-205ENST00000465563 SETD2Q9BYW2 2564 aaPredicted RBP-0.63□□□□□ -2.51
SMC4-205ENST00000465563 FAM223AQ8IWN6 122 aa-0.63□□□□□ -2.51
SMC4-205ENST00000465563 DIP2CQ9Y2E4 1556 aa-0.63□□□□□ -2.51
SMC4-205ENST00000465563 ATP5EP56381 51 aaPredicted RBP-0.64□□□□□ -2.51
SMC4-205ENST00000465563 NUP188Q5SRE5 1749 aa-0.64□□□□□ -2.51
SMC4-205ENST00000465563 SCAPERQ9BY12 1400 aa-0.64□□□□□ -2.51
SMC4-205ENST00000465563 POLA1P09884 1462 aaPredicted RBP-0.65□□□□□ -2.51
SMC4-205ENST00000465563 MRC2Q9UBG0 1479 aa-0.65□□□□□ -2.51
SMC4-205ENST00000465563 LINC00959A0A1B0GUT2 108 aa-0.65□□□□□ -2.51
SMC4-205ENST00000465563 LOC730098B7Z3J9 87 aa-0.65□□□□□ -2.51
SMC4-205ENST00000465563 UBE2D3P61077 147 aa-0.65□□□□□ -2.51
SMC4-205ENST00000465563 UBE2D2P62837 147 aa-0.65□□□□□ -2.51
SMC4-205ENST00000465563 UQCR10Q9UDW1 63 aa-0.65□□□□□ -2.51
SMC4-205ENST00000465563 ARL2-SNX15V9GYD0 113 aa-0.65□□□□□ -2.51
SMC4-205ENST00000465563 ADGRL2O95490 1459 aa-0.66□□□□□ -2.51
SMC4-205ENST00000465563 SVEP1Q4LDE5 3571 aa-0.66□□□□□ -2.52
SMC4-205ENST00000465563 WHAMMP3Q1A5X7 153 aa-0.66□□□□□ -2.52
SMC4-205ENST00000465563 CNOT1A5YKK6 2376 aaKnown RBP-0.66□□□□□ -2.52
SMC4-205ENST00000465563 COL4A6Q14031 1691 aa-0.66□□□□□ -2.52
SMC4-205ENST00000465563 FLGP20930 4061 aaPredicted RBP-0.66□□□□□ -2.52
SMC4-205ENST00000465563 USH2AO75445 5202 aa-0.66□□□□□ -2.52
SMC4-205ENST00000465563 SPHKAPQ2M3C7 1700 aa-0.67□□□□□ -2.52
SMC4-205ENST00000465563 KIAA0556O60303 1618 aa-0.67□□□□□ -2.52
SMC4-205ENST00000465563 TRBV7-4A0A0J9YYF1 115 aa-0.67□□□□□ -2.52
SMC4-205ENST00000465563 FAM24AA6NFZ4 105 aa-0.67□□□□□ -2.52
SMC4-205ENST00000465563 CORTO00230 105 aa-0.67□□□□□ -2.52
SMC4-205ENST00000465563 SNAPC5O75971 98 aa-0.67□□□□□ -2.52
SMC4-205ENST00000465563 GNG11P61952 73 aa-0.67□□□□□ -2.52
SMC4-205ENST00000465563 Q0VG73 95 aa-0.67□□□□□ -2.52
SMC4-205ENST00000465563 FAIMQ9NVQ4 179 aa-0.67□□□□□ -2.52
SMC4-205ENST00000465563 NRKQ7Z2Y5 1582 aa-0.67□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms