RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 UBE2D1P51668 147 aa13.14□□□□□ -0.31
SKA3-205ENST00000465471 HIGD2BQ4VC39 106 aa13.14□□□□□ -0.31
SKA3-205ENST00000465471 LINC00242Q5T6M2 205 aa13.14□□□□□ -0.31
SKA3-205ENST00000465471 LINC00614P0C842 121 aa13.13□□□□□ -0.31
SKA3-205ENST00000465471 ZC2HC1BQ5TFG8 222 aa13.13□□□□□ -0.31
SKA3-205ENST00000465471 FAM19A3Q7Z5A8 133 aa13.13□□□□□ -0.31
SKA3-205ENST00000465471 VCX2Q9H322 139 aa13.13□□□□□ -0.31
SKA3-205ENST00000465471 PAPPA-AS1Q5QFB9 102 aa13.12□□□□□ -0.31
SKA3-205ENST00000465471 C5orf38Q86SI9 138 aa13.12□□□□□ -0.31
SKA3-205ENST00000465471 SCGB3A1Q96QR1 104 aa13.12□□□□□ -0.31
SKA3-205ENST00000465471 C2orf88Q9BSF0 95 aa13.12□□□□□ -0.31
SKA3-205ENST00000465471 TRGC2P03986 189 aa13.11□□□□□ -0.31
SKA3-205ENST00000465471 RAB5BP61020 215 aa13.11□□□□□ -0.31
SKA3-205ENST00000465471 KRTAP17-1Q9BYP8 105 aa13.11□□□□□ -0.31
SKA3-205ENST00000465471 SCO1O75880 301 aa13.1□□□□□ -0.31
SKA3-205ENST00000465471 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.09□□□□□ -0.31
SKA3-205ENST00000465471 MALP21145 153 aa13.09□□□□□ -0.31
SKA3-205ENST00000465471 A0A087WZ39 114 aa13.08□□□□□ -0.32
SKA3-205ENST00000465471 COX6A2Q02221 97 aa13.08□□□□□ -0.32
SKA3-205ENST00000465471 SDIM1Q6ZPB5 146 aa13.08□□□□□ -0.32
SKA3-205ENST00000465471 APOMO95445 188 aa13.07□□□□□ -0.32
SKA3-205ENST00000465471 HBDP02042 147 aa13.07□□□□□ -0.32
SKA3-205ENST00000465471 CHCHD1Q96BP2 118 aaKnown RBP13.07□□□□□ -0.32
SKA3-205ENST00000465471 LINC00526Q96FQ7 95 aa13.07□□□□□ -0.32
SKA3-205ENST00000465471 IGHV3-64A0A075B6Q5 118 aa13.06□□□□□ -0.32
SKA3-205ENST00000465471 PDZD11Q5EBL8 140 aa13.06□□□□□ -0.32
SKA3-205ENST00000465471 OR10D4PQ8NGN7 298 aa13.06□□□□□ -0.32
SKA3-205ENST00000465471 ZNF561-AS1K7EIQ3 104 aa13.05□□□□□ -0.32
SKA3-205ENST00000465471 HAMPP81172 84 aa13.05□□□□□ -0.32
SKA3-205ENST00000465471 PMCHL1Q16048 86 aa13.05□□□□□ -0.32
SKA3-205ENST00000465471 LINC01561Q8N1V8 128 aa13.05□□□□□ -0.32
SKA3-205ENST00000465471 IGLV4-69A0A075B6H9 119 aa13.04□□□□□ -0.32
SKA3-205ENST00000465471 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.04□□□□□ -0.32
SKA3-205ENST00000465471 Q8N1X5 172 aa13.04□□□□□ -0.32
SKA3-205ENST00000465471 C2orf48Q96LS8 159 aa13.04□□□□□ -0.32
SKA3-205ENST00000465471 CST9LQ9H4G1 147 aa13.04□□□□□ -0.32
SKA3-205ENST00000465471 FAT1Q14517 4588 aa13.04□□□□□ -0.32
SKA3-205ENST00000465471 SEC11AP67812 179 aa13.03□□□□□ -0.32
SKA3-205ENST00000465471 SPAG11BQ08648 103 aa13.03□□□□□ -0.32
SKA3-205ENST00000465471 CHAC1Q9BUX1 264 aa13.03□□□□□ -0.32
SKA3-205ENST00000465471 HERVK_113P63121 156 aa13.02□□□□□ -0.33
SKA3-205ENST00000465471 SYCNQ0VAF6 134 aa13.02□□□□□ -0.33
SKA3-205ENST00000465471 CIRBPQ14011 172 aaKnown RBP13.02□□□□□ -0.33
SKA3-205ENST00000465471 PMVKQ15126 192 aa13.02□□□□□ -0.33
SKA3-205ENST00000465471 SCXQ7RTU7 201 aa13.02□□□□□ -0.33
SKA3-205ENST00000465471 ORAOV1Q8WV07 137 aa13.02□□□□□ -0.33
SKA3-205ENST00000465471 CARD19Q96LW7 228 aa13.02□□□□□ -0.33
SKA3-205ENST00000465471 A0A0J9YXV3 536 aa13.01□□□□□ -0.33
SKA3-205ENST00000465471 PANO1I0J062 215 aa13.01□□□□□ -0.33
SKA3-205ENST00000465471 LINC00310P59036 64 aa13.01□□□□□ -0.33
SKA3-205ENST00000465471 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.01□□□□□ -0.33
SKA3-205ENST00000465471 TINCRA0A1B0GVN0 87 aa13□□□□□ -0.33
SKA3-205ENST00000465471 KIAA0087Q14695 138 aa13□□□□□ -0.33
SKA3-205ENST00000465471 BAGE3Q86Y29 109 aa13□□□□□ -0.33
SKA3-205ENST00000465471 IGLV5-45A0A087WSX0 123 aa12.99□□□□□ -0.33
SKA3-205ENST00000465471 F8WDY8 70 aa12.99□□□□□ -0.33
SKA3-205ENST00000465471 Q6ZRU5 148 aa12.99□□□□□ -0.33
SKA3-205ENST00000465471 CIRBP-AS1Q8TBR5 109 aa12.99□□□□□ -0.33
SKA3-205ENST00000465471 CDKN2A-AS1Q9UH64 79 aa12.99□□□□□ -0.33
SKA3-205ENST00000465471 ATP5LO75964 103 aa12.98□□□□□ -0.33
SKA3-205ENST00000465471 CAMK2N2Q96S95 79 aa12.98□□□□□ -0.33
SKA3-205ENST00000465471 GEMIN7Q9H840 131 aaKnown RBP12.98□□□□□ -0.33
SKA3-205ENST00000465471 KRTAP4-5Q9BYR2 181 aa12.97□□□□□ -0.33
SKA3-205ENST00000465471 HSBP1O75506 76 aa12.96□□□□□ -0.33
SKA3-205ENST00000465471 SERF1AO75920 110 aa12.96□□□□□ -0.33
SKA3-205ENST00000465471 SPACA4Q8TDM5 124 aa12.96□□□□□ -0.33
SKA3-205ENST00000465471 ABCA13Q86UQ4 5058 aa12.96□□□□□ -0.33
SKA3-205ENST00000465471 IGLC3P0DOY3 106 aa12.95□□□□□ -0.34
SKA3-205ENST00000465471 S100A1P23297 94 aa12.95□□□□□ -0.34
SKA3-205ENST00000465471 RNF151Q2KHN1 245 aa12.95□□□□□ -0.34
SKA3-205ENST00000465471 MRPL35Q9NZE8 188 aaKnown RBP12.95□□□□□ -0.34
SKA3-205ENST00000465471 PKIGQ9Y2B9 76 aa12.95□□□□□ -0.34
SKA3-205ENST00000465471 VPS13BQ7Z7G8 4022 aa12.95□□□□□ -0.34
SKA3-205ENST00000465471 ATP6V1G1O75348 118 aa12.94□□□□□ -0.34
SKA3-205ENST00000465471 SMR3BP02814 79 aaPredicted RBP12.94□□□□□ -0.34
SKA3-205ENST00000465471 CHTF8P0CG12 524 aa12.94□□□□□ -0.34
SKA3-205ENST00000465471 FAM19A2Q8N3H0 131 aa12.94□□□□□ -0.34
SKA3-205ENST00000465471 LINC00469Q8N7U9 141 aa12.94□□□□□ -0.34
SKA3-205ENST00000465471 A0A096LNI7 61 aa12.93□□□□□ -0.34
SKA3-205ENST00000465471 NDUFA1O15239 70 aa12.93□□□□□ -0.34
SKA3-205ENST00000465471 KRTAP3-3Q9BYR6 98 aa12.93□□□□□ -0.34
SKA3-205ENST00000465471 KRTAP3-2Q9BYR7 98 aa12.93□□□□□ -0.34
SKA3-205ENST00000465471 SMIM1B2RUZ4 78 aa12.92□□□□□ -0.34
SKA3-205ENST00000465471 NUPR1O60356 82 aa12.92□□□□□ -0.34
SKA3-205ENST00000465471 HIST1H2BKO60814 126 aa12.92□□□□□ -0.34
SKA3-205ENST00000465471 HIST1H2BJP06899 126 aa12.92□□□□□ -0.34
SKA3-205ENST00000465471 HIST1H2BOP23527 126 aa12.92□□□□□ -0.34
SKA3-205ENST00000465471 HIST1H2BBP33778 126 aa12.92□□□□□ -0.34
SKA3-205ENST00000465471 HIST1H2BDP58876 126 aa12.92□□□□□ -0.34
SKA3-205ENST00000465471 HIST1H2BCP62807 126 aa12.92□□□□□ -0.34
SKA3-205ENST00000465471 HIST2H2BEQ16778 126 aa12.92□□□□□ -0.34
SKA3-205ENST00000465471 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.92□□□□□ -0.34
SKA3-205ENST00000465471 C10orf25Q5T742 122 aa12.92□□□□□ -0.34
SKA3-205ENST00000465471 Q8IZM0 81 aa12.92□□□□□ -0.34
SKA3-205ENST00000465471 HIST1H2BHQ93079 126 aa12.92□□□□□ -0.34
SKA3-205ENST00000465471 IFI27L1Q96BM0 104 aa12.92□□□□□ -0.34
SKA3-205ENST00000465471 HIST1H2BNQ99877 126 aa12.92□□□□□ -0.34
SKA3-205ENST00000465471 HIST1H2BMQ99879 126 aa12.92□□□□□ -0.34
SKA3-205ENST00000465471 NDUFA6P56556 154 aa12.91□□□□□ -0.34
SKA3-205ENST00000465471 Q5VSD8 79 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 102.8 ms