RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 MIAQ16674 131 aa8.45□□□□□ -1.06
NPHP4-204ENST00000460696 GAGE2AQ6NT46 116 aa8.45□□□□□ -1.06
NPHP4-204ENST00000460696 UBE2D4Q9Y2X8 147 aa8.45□□□□□ -1.06
NPHP4-204ENST00000460696 IGHV3-33P01772 117 aa8.45□□□□□ -1.06
NPHP4-204ENST00000460696 KLK9Q2XQG4 91 aa8.45□□□□□ -1.06
NPHP4-204ENST00000460696 KRTAP24-1Q3LI83 254 aa8.45□□□□□ -1.06
NPHP4-204ENST00000460696 SND1-IT1Q9HBX3 110 aa8.45□□□□□ -1.06
NPHP4-204ENST00000460696 TENM4Q6N022 2769 aa8.44□□□□□ -1.06
NPHP4-204ENST00000460696 APOC4P55056 127 aa8.44□□□□□ -1.06
NPHP4-204ENST00000460696 Q9UF83 564 aa8.44□□□□□ -1.06
NPHP4-204ENST00000460696 LINC01546A6NGU7 62 aa8.44□□□□□ -1.06
NPHP4-204ENST00000460696 COX7B2Q8TF08 81 aa8.44□□□□□ -1.06
NPHP4-204ENST00000460696 HERV-K104P63124 156 aa8.44□□□□□ -1.06
NPHP4-204ENST00000460696 MIR7-3HGQ8N6C7 128 aa8.44□□□□□ -1.06
NPHP4-204ENST00000460696 LINC00482Q8N8I6 264 aa8.43□□□□□ -1.06
NPHP4-204ENST00000460696 TRAV13-2A0A0B4J235 113 aa8.43□□□□□ -1.06
NPHP4-204ENST00000460696 C1orf158Q8N1D5 194 aa8.43□□□□□ -1.06
NPHP4-204ENST00000460696 A0A0B4J2C4 111 aa8.42□□□□□ -1.06
NPHP4-204ENST00000460696 CRYBA4P53673 196 aa8.42□□□□□ -1.06
NPHP4-204ENST00000460696 DCHS2Q6V1P9 2916 aa8.42□□□□□ -1.06
NPHP4-204ENST00000460696 MRPS36P82909 103 aaKnown RBP8.42□□□□□ -1.06
NPHP4-204ENST00000460696 C9orf66Q5T8R8 295 aa8.42□□□□□ -1.06
NPHP4-204ENST00000460696 TRIAP1O43715 76 aa8.41□□□□□ -1.06
NPHP4-204ENST00000460696 BAALC-AS2P0C853 105 aa8.41□□□□□ -1.06
NPHP4-204ENST00000460696 UBE2D1P51668 147 aa8.41□□□□□ -1.06
NPHP4-204ENST00000460696 C15orf53Q8NAA6 179 aa8.41□□□□□ -1.06
NPHP4-204ENST00000460696 PIK3CD-AS1Q5SR53 167 aa8.41□□□□□ -1.06
NPHP4-204ENST00000460696 POM121L12Q8N7R1 296 aa8.41□□□□□ -1.06
NPHP4-204ENST00000460696 TRBV10-2A0A0K0K1G8 114 aa8.4□□□□□ -1.06
NPHP4-204ENST00000460696 FAM222AQ5U5X8 452 aa8.4□□□□□ -1.06
NPHP4-204ENST00000460696 LINC00694P0DN24 101 aa8.4□□□□□ -1.07
NPHP4-204ENST00000460696 CHCHD7Q9BUK0 85 aa8.4□□□□□ -1.07
NPHP4-204ENST00000460696 PRO0255Q9UI72 69 aa8.4□□□□□ -1.07
NPHP4-204ENST00000460696 TEX49A0A1B0GTD5 131 aa8.39□□□□□ -1.07
NPHP4-204ENST00000460696 TIRAPP58753 221 aa8.39□□□□□ -1.07
NPHP4-204ENST00000460696 ZNF575Q86XF7 245 aa8.39□□□□□ -1.07
NPHP4-204ENST00000460696 LINC00308Q8TCZ7 52 aa8.39□□□□□ -1.07
NPHP4-204ENST00000460696 FAM110AQ9BQ89 295 aa8.39□□□□□ -1.07
NPHP4-204ENST00000460696 ATP5G1P05496 136 aa8.38□□□□□ -1.07
NPHP4-204ENST00000460696 LINC00242Q5T6M2 205 aa8.38□□□□□ -1.07
NPHP4-204ENST00000460696 LAMTOR3Q9UHA4 124 aa8.38□□□□□ -1.07
NPHP4-204ENST00000460696 KMT2BQ9UMN6 2715 aaPredicted RBP8.37□□□□□ -1.07
NPHP4-204ENST00000460696 TRBV6-8A0A0A6YYG3 113 aa8.37□□□□□ -1.07
NPHP4-204ENST00000460696 NDUFA1O15239 70 aa8.37□□□□□ -1.07
NPHP4-204ENST00000460696 Q9HAA7 133 aa8.37□□□□□ -1.07
NPHP4-204ENST00000460696 ADAMTSL4-AS1Q5T5F5 129 aa8.37□□□□□ -1.07
NPHP4-204ENST00000460696 TRBV6-4A0A1B0GX49 114 aa8.37□□□□□ -1.07
NPHP4-204ENST00000460696 COX7A2LO14548 114 aa8.37□□□□□ -1.07
NPHP4-204ENST00000460696 MT-ATP8P03928 68 aa8.37□□□□□ -1.07
NPHP4-204ENST00000460696 SPART-AS1P0CW21 52 aa8.37□□□□□ -1.07
NPHP4-204ENST00000460696 INAFM2P0DMQ5 153 aa8.37□□□□□ -1.07
NPHP4-204ENST00000460696 COX6A2Q02221 97 aa8.37□□□□□ -1.07
NPHP4-204ENST00000460696 AMELXQ99217 191 aa8.37□□□□□ -1.07
NPHP4-204ENST00000460696 OVOL2Q9BRP0 275 aa8.37□□□□□ -1.07
NPHP4-204ENST00000460696 NF1P21359 2839 aa8.36□□□□□ -1.07
NPHP4-204ENST00000460696 ZNF561-AS1K7EIQ3 104 aa8.36□□□□□ -1.07
NPHP4-204ENST00000460696 TRAV26-1A0A087WT03 109 aa8.36□□□□□ -1.07
NPHP4-204ENST00000460696 UBE2D3P61077 147 aa8.36□□□□□ -1.07
NPHP4-204ENST00000460696 UBE2D2P62837 147 aa8.36□□□□□ -1.07
NPHP4-204ENST00000460696 HIST1H4AP62805 103 aaKnown RBP8.35□□□□□ -1.07
NPHP4-204ENST00000460696 MRPL23Q16540 153 aaKnown RBP8.35□□□□□ -1.07
NPHP4-204ENST00000460696 UBE2DNLQ8IWF7 75 aa8.35□□□□□ -1.07
NPHP4-204ENST00000460696 LINC00269Q8N2A0 174 aa8.35□□□□□ -1.07
NPHP4-204ENST00000460696 KLK12Q9UKR0 248 aa8.35□□□□□ -1.07
NPHP4-204ENST00000460696 CDC42SE2Q9NRR3 84 aa8.35□□□□□ -1.07
NPHP4-204ENST00000460696 H3BT86 120 aa8.35□□□□□ -1.07
NPHP4-204ENST00000460696 C11orf72Q8NBR9 251 aa8.35□□□□□ -1.07
NPHP4-204ENST00000460696 MDFIQ99750 246 aa8.35□□□□□ -1.07
NPHP4-204ENST00000460696 TRBV30A0A0K0K1B3 111 aa8.34□□□□□ -1.07
NPHP4-204ENST00000460696 BEAN1Q3B7T3 259 aa8.34□□□□□ -1.07
NPHP4-204ENST00000460696 EDA2RQ9HAV5 297 aa8.34□□□□□ -1.07
NPHP4-204ENST00000460696 LECT2O14960 151 aa8.34□□□□□ -1.07
NPHP4-204ENST00000460696 IGLV1-51P01701 117 aa8.34□□□□□ -1.07
NPHP4-204ENST00000460696 Q8N2B8 174 aa8.32□□□□□ -1.08
NPHP4-204ENST00000460696 SPANXDQ9BXN6 97 aa8.32□□□□□ -1.08
NPHP4-204ENST00000460696 SPANXCQ9NY87 97 aa8.32□□□□□ -1.08
NPHP4-204ENST00000460696 KRTAP1-3Q8IUG1 177 aa8.32□□□□□ -1.08
NPHP4-204ENST00000460696 SMIM1B2RUZ4 78 aa8.31□□□□□ -1.08
NPHP4-204ENST00000460696 HRNRQ86YZ3 2850 aaPredicted RBP8.31□□□□□ -1.08
NPHP4-204ENST00000460696 ZFHX3Q15911 3703 aa8.31□□□□□ -1.08
NPHP4-204ENST00000460696 IGLV4-60A0A075B6I1 120 aa8.31□□□□□ -1.08
NPHP4-204ENST00000460696 FSHBP01225 129 aa8.31□□□□□ -1.08
NPHP4-204ENST00000460696 A0A096LNT2 108 aa8.3□□□□□ -1.08
NPHP4-204ENST00000460696 DPH3Q96FX2 82 aa8.3□□□□□ -1.08
NPHP4-204ENST00000460696 H0YGX0 51 aa8.29□□□□□ -1.08
NPHP4-204ENST00000460696 SPAG11BQ08648 103 aa8.29□□□□□ -1.08
NPHP4-204ENST00000460696 TIMM17BO60830 172 aa8.29□□□□□ -1.08
NPHP4-204ENST00000460696 REG3AQ06141 175 aa8.29□□□□□ -1.08
NPHP4-204ENST00000460696 LINC00526Q96FQ7 95 aa8.29□□□□□ -1.08
NPHP4-204ENST00000460696 NCR3O14931 201 aa8.29□□□□□ -1.08
NPHP4-204ENST00000460696 IGKV2D-24A0A075B6R9 120 aa8.29□□□□□ -1.08
NPHP4-204ENST00000460696 CHCHD10Q8WYQ3 142 aaPredicted RBP8.29□□□□□ -1.08
NPHP4-204ENST00000460696 XGP55808 180 aa8.28□□□□□ -1.08
NPHP4-204ENST00000460696 LINC00959A0A1B0GUT2 108 aa8.28□□□□□ -1.08
NPHP4-204ENST00000460696 ORMDL1Q9P0S3 153 aa8.28□□□□□ -1.08
NPHP4-204ENST00000460696 SMIM9A6NGZ8 99 aa8.28□□□□□ -1.08
NPHP4-204ENST00000460696 B5MCH6 92 aa8.28□□□□□ -1.08
NPHP4-204ENST00000460696 NTM-AS1Q6ZSK4 140 aa8.28□□□□□ -1.08
NPHP4-204ENST00000460696 H7C423 109 aa8.27□□□□□ -1.09
NPHP4-204ENST00000460696 LST1O00453 97 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms