RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 ATOX1O00244 68 aa8.34□□□□□ -1.07
CPSF3-202ENST00000460593 HIST1H4AP62805 103 aaKnown RBP8.34□□□□□ -1.07
CPSF3-202ENST00000460593 RPL18AQ02543 176 aaKnown RBP8.34□□□□□ -1.07
CPSF3-202ENST00000460593 ZNF415Q09FC8 603 aa8.34□□□□□ -1.07
CPSF3-202ENST00000460593 LINC01561Q8N1V8 128 aa8.34□□□□□ -1.07
CPSF3-202ENST00000460593 XCL2Q9UBD3 114 aa8.34□□□□□ -1.07
CPSF3-202ENST00000460593 F5H768 121 aa8.34□□□□□ -1.07
CPSF3-202ENST00000460593 SND1-IT1Q9HBX3 110 aa8.34□□□□□ -1.07
CPSF3-202ENST00000460593 NBPF19A0A087WUL8 3843 aa8.34□□□□□ -1.07
CPSF3-202ENST00000460593 PTPN13Q12923 2485 aa8.34□□□□□ -1.07
CPSF3-202ENST00000460593 PFN2P35080 140 aa8.34□□□□□ -1.07
CPSF3-202ENST00000460593 TRGV1A0A0A0MS02 117 aa8.33□□□□□ -1.08
CPSF3-202ENST00000460593 C11orf72Q8NBR9 251 aa8.33□□□□□ -1.08
CPSF3-202ENST00000460593 IGHV4-30-2A0A087WSY4 118 aa8.33□□□□□ -1.08
CPSF3-202ENST00000460593 LINC00158P58513 81 aa8.33□□□□□ -1.08
CPSF3-202ENST00000460593 MAPK1IP1LQ8NDC0 245 aa8.33□□□□□ -1.08
CPSF3-202ENST00000460593 DPH3Q96FX2 82 aa8.33□□□□□ -1.08
CPSF3-202ENST00000460593 OR13C6PQ8NH95 151 aa8.32□□□□□ -1.08
CPSF3-202ENST00000460593 USP17L23D6RBM5 183 aa8.32□□□□□ -1.08
CPSF3-202ENST00000460593 DEFB112Q30KQ8 113 aa8.32□□□□□ -1.08
CPSF3-202ENST00000460593 FAM222AQ5U5X8 452 aa8.32□□□□□ -1.08
CPSF3-202ENST00000460593 HRCT1Q6UXD1 115 aa8.32□□□□□ -1.08
CPSF3-202ENST00000460593 RPL28P46779 137 aaKnown RBP8.31□□□□□ -1.08
CPSF3-202ENST00000460593 KHDC1LQ5JSQ8 128 aa8.31□□□□□ -1.08
CPSF3-202ENST00000460593 SONP18583 2426 aaKnown RBP8.31□□□□□ -1.08
CPSF3-202ENST00000460593 FLNCQ14315 2725 aa8.31□□□□□ -1.08
CPSF3-202ENST00000460593 EPG5Q9HCE0 2579 aa8.31□□□□□ -1.08
CPSF3-202ENST00000460593 RPL36AP83881 106 aaKnown RBP8.31□□□□□ -1.08
CPSF3-202ENST00000460593 RPL36ALQ969Q0 106 aaKnown RBP8.31□□□□□ -1.08
CPSF3-202ENST00000460593 LOC100131303A0A0U1RQF7 123 aa8.3□□□□□ -1.08
CPSF3-202ENST00000460593 UPK3BQ9BT76 320 aa8.3□□□□□ -1.08
CPSF3-202ENST00000460593 FN1P02751 2386 aaKnown RBP8.3□□□□□ -1.08
CPSF3-202ENST00000460593 C10orf105Q8TEF2 133 aa8.3□□□□□ -1.08
CPSF3-202ENST00000460593 Q6ZTI0 123 aa8.3□□□□□ -1.08
CPSF3-202ENST00000460593 CDC42SE2Q9NRR3 84 aa8.3□□□□□ -1.08
CPSF3-202ENST00000460593 TRAV23DV6A0A075B6W5 121 aa8.29□□□□□ -1.08
CPSF3-202ENST00000460593 TRAV13-2A0A0B4J235 113 aa8.29□□□□□ -1.08
CPSF3-202ENST00000460593 TMEM89A2RUT3 159 aa8.29□□□□□ -1.08
CPSF3-202ENST00000460593 RNASE1P07998 156 aaKnown RBP8.29□□□□□ -1.08
CPSF3-202ENST00000460593 CCL18P55774 89 aa8.29□□□□□ -1.08
CPSF3-202ENST00000460593 SERP2Q8N6R1 65 aa8.29□□□□□ -1.08
CPSF3-202ENST00000460593 FHL2Q14192 279 aa8.29□□□□□ -1.08
CPSF3-202ENST00000460593 PAX4O43316 350 aa8.28□□□□□ -1.08
CPSF3-202ENST00000460593 FAM19A1Q7Z5A9 133 aa8.28□□□□□ -1.08
CPSF3-202ENST00000460593 PRR3P79522 188 aaKnown RBP8.28□□□□□ -1.08
CPSF3-202ENST00000460593 PLA2G2AP14555 144 aa8.28□□□□□ -1.08
CPSF3-202ENST00000460593 COX7B2Q8TF08 81 aa8.28□□□□□ -1.08
CPSF3-202ENST00000460593 COPS9Q8WXC6 57 aa8.27□□□□□ -1.09
CPSF3-202ENST00000460593 NF1P21359 2839 aa8.27□□□□□ -1.09
CPSF3-202ENST00000460593 MSMBP08118 114 aa8.27□□□□□ -1.09
CPSF3-202ENST00000460593 Q6JHZ5 121 aa8.27□□□□□ -1.09
CPSF3-202ENST00000460593 MAP6D1Q9H9H5 199 aa8.27□□□□□ -1.09
CPSF3-202ENST00000460593 NAV2Q8IVL1 2488 aa8.26□□□□□ -1.09
CPSF3-202ENST00000460593 SS18Q15532 418 aa8.26□□□□□ -1.09
CPSF3-202ENST00000460593 PRORYQ9H606 182 aa8.26□□□□□ -1.09
CPSF3-202ENST00000460593 UBE2L6O14933 153 aa8.26□□□□□ -1.09
CPSF3-202ENST00000460593 IGLV4-60A0A075B6I1 120 aa8.25□□□□□ -1.09
CPSF3-202ENST00000460593 TMEM258P61165 79 aa8.25□□□□□ -1.09
CPSF3-202ENST00000460593 K7EQD1 137 aa8.24□□□□□ -1.09
CPSF3-202ENST00000460593 GHRHP01286 108 aa8.24□□□□□ -1.09
CPSF3-202ENST00000460593 INSP01308 110 aa8.24□□□□□ -1.09
CPSF3-202ENST00000460593 ENHOQ6UWT2 76 aa8.24□□□□□ -1.09
CPSF3-202ENST00000460593 SETXQ7Z333 2677 aaKnown RBP8.24□□□□□ -1.09
CPSF3-202ENST00000460593 NBEAL2Q6ZNJ1 2754 aa8.24□□□□□ -1.09
CPSF3-202ENST00000460593 RPS28P62857 69 aaKnown RBP8.24□□□□□ -1.09
CPSF3-202ENST00000460593 Q5XG85 94 aa8.24□□□□□ -1.09
CPSF3-202ENST00000460593 CCL19Q99731 98 aa8.24□□□□□ -1.09
CPSF3-202ENST00000460593 ZFYVE26Q68DK2 2539 aa8.24□□□□□ -1.09
CPSF3-202ENST00000460593 LRRK2Q5S007 2527 aa8.24□□□□□ -1.09
CPSF3-202ENST00000460593 NOP10Q9NPE3 64 aaKnown RBP8.24□□□□□ -1.09
CPSF3-202ENST00000460593 C1orf158Q8N1D5 194 aa8.23□□□□□ -1.09
CPSF3-202ENST00000460593 C20orf197Q8N268 126 aa8.23□□□□□ -1.09
CPSF3-202ENST00000460593 C11orf44Q8N8P7 122 aa8.23□□□□□ -1.09
CPSF3-202ENST00000460593 TEX15Q9BXT5 2789 aa8.23□□□□□ -1.09
CPSF3-202ENST00000460593 DYNLRB2Q8TF09 96 aa8.22□□□□□ -1.09
CPSF3-202ENST00000460593 OBSCN-AS1Q96MR7 158 aa8.22□□□□□ -1.09
CPSF3-202ENST00000460593 CFAP46Q8IYW2 2715 aa8.22□□□□□ -1.09
CPSF3-202ENST00000460593 PF4P02776 101 aa8.22□□□□□ -1.09
CPSF3-202ENST00000460593 CLPSL2Q6UWE3 100 aa8.22□□□□□ -1.09
CPSF3-202ENST00000460593 TMEM243Q9BU79 118 aa8.22□□□□□ -1.09
CPSF3-202ENST00000460593 FAM208BQ5VWN6 2430 aa8.22□□□□□ -1.09
CPSF3-202ENST00000460593 ANKRD17O75179 2603 aaKnown RBP8.21□□□□□ -1.1
CPSF3-202ENST00000460593 ABCA12Q86UK0 2595 aa8.21□□□□□ -1.1
CPSF3-202ENST00000460593 GNLYP22749 145 aa8.2□□□□□ -1.1
CPSF3-202ENST00000460593 FAM19A3Q7Z5A8 133 aa8.2□□□□□ -1.1
CPSF3-202ENST00000460593 ORMDL1Q9P0S3 153 aa8.2□□□□□ -1.1
CPSF3-202ENST00000460593 ACACBO00763 2458 aa8.2□□□□□ -1.1
CPSF3-202ENST00000460593 H0YGX0 51 aa8.2□□□□□ -1.1
CPSF3-202ENST00000460593 MYO18BQ8IUG5 2567 aa8.2□□□□□ -1.1
CPSF3-202ENST00000460593 ZNF702PQ9H963 129 aa8.19□□□□□ -1.1
CPSF3-202ENST00000460593 A8MTW9 85 aa8.19□□□□□ -1.1
CPSF3-202ENST00000460593 CCKP06307 115 aa8.19□□□□□ -1.1
CPSF3-202ENST00000460593 ODF3L2Q3SX64 289 aa8.19□□□□□ -1.1
CPSF3-202ENST00000460593 M0R2N4 97 aa8.18□□□□□ -1.1
CPSF3-202ENST00000460593 WFDC10AQ9H1F0 79 aa8.18□□□□□ -1.1
CPSF3-202ENST00000460593 TRGV2A0A075B6R0 118 aa8.18□□□□□ -1.1
CPSF3-202ENST00000460593 A0A1W2PRX2 142 aa8.18□□□□□ -1.1
CPSF3-202ENST00000460593 OVOL2Q9BRP0 275 aa8.18□□□□□ -1.1
CPSF3-202ENST00000460593 CACNA1AO00555 2505 aa8.18□□□□□ -1.1
CPSF3-202ENST00000460593 TRAV25A0A0B4J276 109 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms